CcUC04G060010 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G060010
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionArabinogalactan peptide 23-like
LocationCicolChr04: 2445219 .. 2449131 (-)
RNA-Seq ExpressionCcUC04G060010
SyntenyCcUC04G060010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTTGCATGGCTTTCAGCTAGTATTTACATGCACATGGTTTCTTTTCATGTAGTTTTGAAAGCTTGAACATGATTTTGCGCGTTTTGTTTTGTATCGCATTTAATTATTCATTTATTTATCAATTAATTTCTTTTAAATAAAATTCGAACATTCTTAAAGAAATATTTTATTAGGGGTACCTCGAAGCACGGTTGACTATTATTTATTAATGAGGCCACATTTGGTAACAAAAATTTAAGGGTTGTTTAAAATCGTGTTTTCTCTTCTCCTTCATTGTTGCATAGCGTTGTTGTGGGTCGAGTATGCATCGAGTAATGATCCGGTTAGAGGTCGGTCTAGGCGGGTCGTTACATTGATACACTAAAGAGAGCCAAACTTGAATAATAAGAAACAGAAATTAGCTCTTTTTATTATTTTATTATTTTTTTTGCATATTTGTAAATTTAAAAAAAAATCATTGCTAAATTTACAATTTTTAAAATAATTTTTGCTATTCTTGCAACTGTCCCTATAGAATATTTTCATGTTTATTATTGAATATCAATTCTATGTATATCAATGGATTGACCCAAACGCTTAATCTTATGAGTGAAAACAAATATAATATGATATCCATCTAACACTCCAATTTTAGTTGGGAACTAAGTTTCTATGGTGCATGTTAACACTCCAATTTTAGTTGGGAACTAAGTTTCTATGGTGCATGTTAAATGACCGATTGATCTAAAACTTTGAATACCGCAAATTTAATATTAGATCATCTAACAATTCTAGACGAACCAGGTGTATTTGGAAATTATATACTGGACCCTAATACTTCACTCACTAACATGGGTTGAAAAAAAAGAAGTAAATTTAAACAAAAAATGTAAAGAGTAGGCTTGACATGAGACTAAATAGGGAATGGAAAAGAGGGCAGCAAGAGATAGAAGATTACTTGTAATGGTTTTTGTTTATTTATTTTTAGTTTAAATTCAAATCATAAAATTACTAGTCAACTAAAAGAAAAAAAATATGTCGTATCAAATTAAAAGGAAAATAGTAAGACTAAATTCTCTCTCTCTCTCCCTCTATATTTATATATATTTCTAAAAACCTTTTTTTTATTATTGAGAAGAATATTGGTGAATACATTATTAGTTTGAATTGAATGACTAAATTATGTATGAACAATGTTAATTACCCTATTCAACCACACATGAAAAATCAAGAAAACAGAGAACTGTTGAAATATTTGAATTGTCAAATCATCACTGCATTGTAAACGAAAAAAATGTCAAAATCAGACTTATGACCGGTTTGAATTAAATTAAATAATAAATGTTTACAAAAATTTATTTTCATTTAAATACTTTTTACTAGAATTTTTTAAAATAAAGATATAAATAGCTTTCAAAAATTCATTTTAAGTGTTGCGATTGTCAAATACTTATATTTTTTTCAAAATGACTTTTCTTTTTTTAAAAAAAAAAATTAAATACTTTAAAAGGCATTCTAAACATGCTCTTATACTAATAAGCAATTGAAAACCTCTGATCTTCCCATCAAAACTCACTCAAGGCTCAAACTTCACATTCAAACCCATGCCCTAAACTTTTCTTTAACGGGTTGTTTAGTTCAAGGTTTTTATAGATGTCTGAGAATAAGATGTCTCGGAATAAGATATCTGGAAATAAAATATGATTGTGTTTGGTTGTGCACGGAAAATGCTATAAGAATGTTATGAACAAGAATTATGTTTGTATTTAATTTATAAAATTAAGCATGGCAATCTTATACAACTTTAATCTATTAATTCATTAAAGAAGAATAATAATGTTAATTATAAATATTTGAAATTTTAGTAATTTATAATTAAAATTAACCGATTAATATATTTAATGAATGGTCATTTTTATTATTAATTAAGTTCAATATCAATAATTTTAAATTTAATTAAATAATATAAGAAACTATATTTTAATAAATAATATTATATATAAAAAGTGAAAAAAAAGACAAAAAGGTGATATATTAATAAAGAATATTAAAAAAAGAGTTTTATAAATGTGATACGTTAATAATGAATGAAGTTACAAAAATTAATTCCAATAAATAATTAACTGATTATAAATAATCGATTACATGTTCATAATGAAAGATCGAATTAAATTAATTATTATTATTAAAAAAATAATAAATAATCAATTATAACTATTGAAAAACACATTAGAAAACAAATTTTTATACTTACTAAATTTAACTAATCCTAGTTTAGGAATTAAATATATTTAAGATGTTTTTAGTTAATTAATTAATAGTTTATGTAAATAAATAATTGAATTCATTTAATAAATTTTTATTTTAAAAGTAAGTTAAGTTTAAGACATTATTATTGATTTATTAAGATAAGTACTTGTATTAATTTTGTTAAATTAATACCAATCAATAAATTATATGTTGATTTTATACACTTATATATTGATTTATTTACTCCATCTTTAAGGAGGTATATGTATTTGAAATTGTTATATTGACAATGTTTCTATAGAGACAAAGCCTTAAAATTCTCTTATCTACAAGTTTCTATAAGAAATTGTTATATTGGATTCTAGGTAGTTGACAATTCATTCATTTAGTAGAATAATGGTCGAATCATAAGTTAAAAGTATATAGTCAAACTTAAAACTATGAGACGTTTTCAAAAATAGAAAAACGGTTGAAAATAATTACAAATATAACAAAATTTTATTTTCTATCTATTGATAAACAACGATATACATCTATCACTTTACCAGATAGATATTAATAGATGTCCATCTAGGTCGTAAAATTTTCTATTCTTAAAATTACTATATTAATTTTTCTCATTCCAAATATCATCTTTAAAAAAAAATTATATATTGATACTATTTGTAGGGTTTAGATGAACAATTCCCCCTATTTTTAACCATAATCCAAAGTATGAATATCAAAAGCAATTTTGAACATAGTAAATAGTAAAAATAAATATAGTGAGTGAGCCTCACTTCCAAGATTCTCTCTAACCAATTTCCTAACCACACTCGATTTAAAAAACATAACTTTAATTTTTCTTTCTTTATTATATAATTTCTCAACATTTAATCCATTTTTTTTAATAACATTTCTTAAAATTTTAAAATAAGAAACATCCTTTAAACTAAGGTTGTAATTTAACCTTAAATAAAACAGTAATATGAAAAATAATAAATGGTAGGAGGCTTTAGAAGATCAAGGTGACCCCAAAGGGTTATGTACTTTTGAAGTGAAGGACTAAAGATAAAAATAAAAAATAGAATGGACAAAGTTTCATAACCAAAATAAAAGCTCAAACCCAAAAGATTATTTAAAAAATAGAAAAATATTAATTAAACAAAATTATTCTACCACATATTTTTCTAACTAAATTAAAGTTAGTTAAAGTCAACTAAATTTAGTATATCACTAACAAATTCTCCAAGATTACAGTCAAAAGCTGTTTTACACCCAAAAGTGGATTAAATTTCTCCCTATAAATCTATTCTCACCCTTCTCATCTTCTTCAGACCTGCATTCCATTACTACTTACAAAAGGAAAAAAAAAAAAAAAATCAAAAAAAAAAAAACCAAAAAAACCAAAAAAAAAAAAAACAAAACCAAAAAAGGGAATTTTCCCTCTTGTTCTTCTCAAGCAGGTCTTTCTCCAGTATCCTTTTTTCCCCTCCTTTATCTTTTCATCATGGAAATGAAGAACTTCGCCTGTGCTGCGTTCGTCGCTGTTGCCGCCTCCCTGAGCATGGTTTTAGCTGCCAATGAAGCGGCATCCCCAGCACCCGGCCCATCCAGCGGTGCCTCCGCTACTTTGCCCGTCGTCGGAACGTTGCTAGGTGCATCTGCTGTCTCTCTCATTGCCTACTGCCTTCAGTAA

mRNA sequence

ATGGGACTTGCATGGCTTTCAGCTAGTCTTTCTCCAGTATCCTTTTTTCCCCTCCTTTATCTTTTCATCATGGAAATGAAGAACTTCGCCTGTGCTGCGTTCGTCGCTGTTGCCGCCTCCCTGAGCATGGTTTTAGCTGCCAATGAAGCGGCATCCCCAGCACCCGGCCCATCCAGCGGTGCCTCCGCTACTTTGCCCGTCGTCGGAACGTTGCTAGGTGCATCTGCTGTCTCTCTCATTGCCTACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGGACTTGCATGGCTTTCAGCTAGTCTTTCTCCAGTATCCTTTTTTCCCCTCCTTTATCTTTTCATCATGGAAATGAAGAACTTCGCCTGTGCTGCGTTCGTCGCTGTTGCCGCCTCCCTGAGCATGGTTTTAGCTGCCAATGAAGCGGCATCCCCAGCACCCGGCCCATCCAGCGGTGCCTCCGCTACTTTGCCCGTCGTCGGAACGTTGCTAGGTGCATCTGCTGTCTCTCTCATTGCCTACTGCCTTCAGTAA

Protein sequence

MGLAWLSASLSPVSFFPLLYLFIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ
Homology
[Close]
BLAST of CcUC04G060010 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 5.6e-18
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          MEMKNFACAAF+AV ASLSMVLA++EAASPAPGPSSG SATLPVVGTLLGASA SLIAYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 84 LQ 86
          LQ
Sbjct: 61 LQ 62

[Close]
BLAST of CcUC04G060010 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 28 NFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYCLQ 86
          NFACAAF+ VAASLSMVLA++EAASPAPGPSS ASATLPVVGTLLGASA SLIAYCLQ
Sbjct: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

[Close]
BLAST of CcUC04G060010 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 22 FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIA 81
          FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  A
Sbjct: 38 FIMELKKISIAVIVA-AASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFA 97

Query: 82 YCL 85
          Y L
Sbjct: 98 YYL 99

[Close]
BLAST of CcUC04G060010 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii])

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 22 FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIA 81
          FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  A
Sbjct: 38 FIMELKKISTAVIVA-AASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFA 97

Query: 82 YCL 85
          Y L
Sbjct: 98 YYL 99

[Close]
BLAST of CcUC04G060010 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          ME+K  +CA  V VAAS+S  LAA+E ++PAP P+SGASATLPVVG+L+GAS VS  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 84 LQ 86
          LQ
Sbjct: 61 LQ 61

[Close]
BLAST of CcUC04G060010 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-08
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          MEMK  AC    A AAS++ V+AA E  +PAPGP+S ASA LP +G+L+GAS VSL +Y 
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 84 L 85
          L
Sbjct: 61 L 60

[Close]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          MEMKNFACAAF+AV ASLSMVLA++EAASPAPGPSSG SATLPVVGTLLGASA SLIAYC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 84 LQ 86
          LQ
Sbjct: 61 LQ 62

[Close]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 22 FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIA 81
          FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  A
Sbjct: 38 FIMELKKISTAVIVA-AASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFA 97

Query: 82 YCL 85
          Y L
Sbjct: 98 YYL 99

[Close]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-09
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 22 FIMEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIA 81
          FIME+K  + A  VA AASLS V+AANE  +PAPGPSSGASATLPVVG+L+GAS VS  A
Sbjct: 38 FIMELKKISIAVIVA-AASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFA 97

Query: 82 YCL 85
          Y L
Sbjct: 98 YYL 99

[Close]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.6e-08
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          ME+K  +CA  V VAAS+S  LAA+E ++PAP P+SGASATLPVVG+L+GAS VS  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 84 LQ 86
          LQ
Sbjct: 61 LQ 61

[Close]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          M+MK  +CA  VA AAS+S VLA++++ +PAPGPSSGASA LPV G+L+GAS VS  AY 
Sbjct: 34 MDMKKISCAVLVA-AASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 84 LQ 86
          LQ
Sbjct: 94 LQ 94

[Close]
BLAST of CcUC04G060010 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 57.4 bits (137), Expect = 6.6e-09
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGPSSGASATLPVVGTLLGASAVSLIAYC 83
          MEMK  AC    A AAS++ V+AA E  +PAPGP+S ASA LP +G+L+GAS VSL +Y 
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 84 L 85
          L
Sbjct: 61 L 60

[Close]
BLAST of CcUC04G060010 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-06
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 24 MEMKNFACAAFVAVAASLSMVLAANEAASPAPGP-SSGASATLPVVGTLLGASAVSLIAY 83
          MEMK  AC   V  AAS++ V+AA E  +PAPGP +SGAS  +P +G+L+GAS VSL AY
Sbjct: 1  MEMKKIACGV-VFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 84 CL 85
           L
Sbjct: 61 YL 60

The following BLAST results are available for this feature:
BLAST of CcUC04G060010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0035760.15.6e-1890.32arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga... [more]
KAE8649766.12.6e-1589.66hypothetical protein Csa_011936, partial [Cucumis sativus][more]
PON91671.11.4e-0869.84hypothetical protein TorRG33x02_125020 [Trema orientale][more]
PON58107.11.4e-0869.84hypothetical protein PanWU01x14_168770 [Parasponia andersonii][more]
PNT29922.11.2e-0764.52hypothetical protein POPTR_006G056200 [Populus trichocarpa][more]
BLAST of CcUC04G060010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S2W49.2e-0857.38Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
BLAST of CcUC04G060010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E2712.7e-1890.32Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A2P5CAP76.6e-0969.84Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE... [more]
A0A2P5F1L36.6e-0969.84Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV... [more]
A0A2K1ZXB05.6e-0864.52Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ... [more]
A0A059DIY41.6e-0762.90Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02... [more]
BLAST of CcUC04G060010 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G57690.16.6e-0957.38arabinogalactan protein 23 [more]
AT2G41905.13.0e-0656.45BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 23..85
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 23..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G060010.1CcUC04G060010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane