CcUC04G059840 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G059840
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich cell wall structural protein 1.0-like
Location	CicolChr04: 1875965 .. 1876195 (+)
RNA-Seq Expression	CcUC04G059840
Synteny	CcUC04G059840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGCGGTGGAGGCGGTGGTAGTATAGGTGGAGCAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCAGAGGAGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGGGCAATGCAAGAGGTTACTTTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

mRNA sequence

ATGGCCGGCGGTGGAGGCGGTGGTAGTATAGGTGGAGCAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCAGAGGAGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGGGCAATGCAAGAGGTTACTTTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

Coding sequence (CDS)

ATGGCCGGCGGTGGAGGCGGTGGTAGTATAGGTGGAGCAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCAGAGGAGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGGGCAATGCAAGAGGTTACTTTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAG

Protein sequence

MAGGGGGGSIGGAGGGRDGKSSGRGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFEGNARGYFQDYRAAEKGGK

Homology

[Close]

BLAST of CcUC04G059840 vs. NCBI nr
Match: XP_008465297.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 2  AGGGGGGSIGGAGGGRDGKSSGRGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFEGNA 61
          AG GGGG  GG+G G  GK  G GGG+ G GG GGG GTMVAPG+GGAVHISR+ FE N+
Sbjct: 18 AGVGGGGGGGGSGSGGGGK-GGSGGGSCGKGGGGGGHGTMVAPGTGGAVHISRDAFESNS 77

Query: 62 RGYFQDYRAAEKGGK 77
          RGYFQD+RAAEKGGK
Sbjct: 78 RGYFQDFRAAEKGGK 91

[Close]

BLAST of CcUC04G059840 vs. NCBI nr
Match: XP_038900902.1 (uncharacterized protein LOC120087950 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 33 GKGGGGGTMVAPGSGGAVHISREGFEGNARGYFQDYRAAEKGGK 77
          G   G GTMVAPGSGGA HISREGFE NARGYFQD  A++KGGK
Sbjct: 2  GAACGSGTMVAPGSGGAAHISREGFESNARGYFQDLHASQKGGK 45

[Close]

BLAST of CcUC04G059840 vs. ExPASy TrEMBL
Match: A0A1S3CQ14 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103502951 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-09
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 2  AGGGGGGSIGGAGGGRDGKSSGRGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFEGNA 61
          AG GGGG  GG+G G  GK  G GGG+ G GG GGG GTMVAPG+GGAVHISR+ FE N+
Sbjct: 18 AGVGGGGGGGGSGSGGGGK-GGSGGGSCGKGGGGGGHGTMVAPGTGGAVHISRDAFESNS 77

Query: 62 RGYFQDYRAAEKGGK 77
          RGYFQD+RAAEKGGK
Sbjct: 78 RGYFQDFRAAEKGGK 91

The following BLAST results are available for this feature:

BLAST of CcUC04G059840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465297.1	1.6e-08	72.00	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]
XP_038900902.1	1.1e-06	77.27	uncharacterized protein LOC120087950 [Benincasa hispida]	[more]

BLAST of CcUC04G059840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G059840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQ14	7.8e-09	72.00	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CcUC04G059840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G059840.1	CcUC04G059840.1	mRNA