CcUC04G059830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G059830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionAcetate kinase
LocationCicolChr04: 1808002 .. 1808313 (-)
RNA-Seq ExpressionCcUC04G059830
SyntenyCcUC04G059830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTAACATAACAGTGAATGATGATAATGGTTGGACGCCAATTCCAATTGATGATTATATAGACATAGTTGGAAGGTTTGCAGTGGTGGAGTCTACATATGGAAAGGTGGGGATAATACGAAAGTTCATTGTTGTGCTAAAGGCTTGGTTTAAGCCACTTGAAGATGGAAAAACATATCGCGTTAACGTGAAGGTGGAAGAAACTGTATTACCAAACCCATCATATGAAAAGATATATGATGCCATTGTGGAGCATCAAAGAGATCCTCGTTCTTTCGCACTCTTATCCTTCGATCCCTTACATTAG

mRNA sequence

ATGAGTAGTAACATAACAGTGAATGATGATAATGGTTGGACGCCAATTCCAATTGATGATTATATAGACATAGTTGGAAGGTTTGCAGTGGTGGAGTCTACATATGGAAAGGTGGGGATAATACGAAAGTTCATTGTTGTGCTAAAGGCTTGGTTTAAGCCACTTGAAGATGGAAAAACATATCGCGTTAACGTGAAGGTGGAAGAAACTGTATTACCAAACCCATCATATGAAAAGATATATGATGCCATTGTGGAGCATCAAAGAGATCCTCGTTCTTTCGCACTCTTATCCTTCGATCCCTTACATTAG

Coding sequence (CDS)

ATGAGTAGTAACATAACAGTGAATGATGATAATGGTTGGACGCCAATTCCAATTGATGATTATATAGACATAGTTGGAAGGTTTGCAGTGGTGGAGTCTACATATGGAAAGGTGGGGATAATACGAAAGTTCATTGTTGTGCTAAAGGCTTGGTTTAAGCCACTTGAAGATGGAAAAACATATCGCGTTAACGTGAAGGTGGAAGAAACTGTATTACCAAACCCATCATATGAAAAGATATATGATGCCATTGTGGAGCATCAAAGAGATCCTCGTTCTTTCGCACTCTTATCCTTCGATCCCTTACATTAG

Protein sequence

MSSNITVNDDNGWTPIPIDDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLEDGKTYRVNVKVEETVLPNPSYEKIYDAIVEHQRDPRSFALLSFDPLH
Homology
BLAST of CcUC04G059830 vs. NCBI nr
Match: XP_038882290.1 (cysteine proteinase inhibitor 5-like [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 8.5e-05
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 0

Query: 13  WTPIP--IDDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLEDGKTYRVNVKVEET 72
           W PI    D Y+  +GRFAV+E T+  VG   KFI V+    +P+  GK YR+ V+V E 
Sbjct: 24  WEPIKNIHDPYVQEMGRFAVMEHTHKLVGASLKFICVVSGETRPMSQGKEYRLVVEVAEQ 83

Query: 73  VLPNPSY----EKIYDAIVEHQRDPRSFALLSF 100
           ++ +P       K Y A V  +   RS+ L+SF
Sbjct: 84  IITSPPMLSVSIKFYLATVLEKPIDRSWQLISF 116

BLAST of CcUC04G059830 vs. NCBI nr
Match: WP_198843152.1 (hypothetical protein, partial [Aureibaculum sp. A20] >MBJ2176574.1 hypothetical protein [Aureibaculum sp. A20])

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-04
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 12  GWTPIP--IDDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLEDGKTYRVNVKVEE 71
           GW PI    D Y+  +GRF+V+E T+  VG   KFI V+    +P+ +GK YR+ V+V E
Sbjct: 27  GWEPIKNIHDPYVQEMGRFSVMEHTHKLVGASMKFIRVVSGETRPMSEGKEYRLVVEVAE 86

Query: 72  TVLPNPSY----EKIYDAIVEHQRDPRSFALLSF 100
            ++  P       K Y A V  +   RS+ L +F
Sbjct: 87  HIITCPPMLSVSVKFYLATVLEKPLDRSWQLEAF 120

BLAST of CcUC04G059830 vs. NCBI nr
Match: KGN53820.1 (hypothetical protein Csa_014847 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 16  IPIDDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLE-DGKTYRVNVKVEETVL-P 75
           +  ++Y+  +G+FAV E T+   GI RKFI V  A    +   G  Y + VKV+E +L P
Sbjct: 23  VEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAP 82

Query: 76  N-PSYEKIYDAIVEHQRDPRSFALLSFD 101
           + P YEK+Y A V H +   S+ALL F+
Sbjct: 83  SFPKYEKLYMATVLHNKVNHSWALLRFE 110

BLAST of CcUC04G059830 vs. ExPASy TrEMBL
Match: A0A0A0KW14 (Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-04
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 16  IPIDDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLE-DGKTYRVNVKVEETVL-P 75
           +  ++Y+  +G+FAV E T+   GI RKFI V  A    +   G  Y + VKV+E +L P
Sbjct: 23  VEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAP 82

Query: 76  N-PSYEKIYDAIVEHQRDPRSFALLSFD 101
           + P YEK+Y A V H +   S+ALL F+
Sbjct: 83  SFPKYEKLYMATVLHNKVNHSWALLRFE 110

BLAST of CcUC04G059830 vs. ExPASy TrEMBL
Match: A0A6J1GCT2 (uncharacterized protein LOC111453027 OS=Cucurbita moschata OX=3662 GN=LOC111453027 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.8e-04
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 0

Query: 13  WTPIPI-DDYIDIVGRFAVVESTYGKVGIIRKFIVVLKAWFKPLEDGKTYRVNVKVEET- 72
           W P+ + D Y+  +GRFAV+E  +G  G+   FI V+    K + +GK Y + V+V+E  
Sbjct: 23  WEPVNVHDQYVQELGRFAVMEHVHGLCGVGMTFICVVSGESKMVCEGKKYSLVVEVKEVP 82

Query: 73  VLPN--PSYEKIYDAIVEHQRDPRSFALLSFDP 102
           VLP+  P+  K+Y A V  ++  +S+ LL+F P
Sbjct: 83  VLPHACPAI-KLYVADVLDKQCAKSWELLAFKP 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882290.18.5e-0538.71cysteine proteinase inhibitor 5-like [Benincasa hispida][more]
WP_198843152.17.2e-0437.23hypothetical protein, partial [Aureibaculum sp. A20] >MBJ2176574.1 hypothetical ... [more]
KGN53820.19.4e-0440.91hypothetical protein Csa_014847 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KW144.6e-0440.91Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1[more]
A0A6J1GCT27.8e-0437.63uncharacterized protein LOC111453027 OS=Cucurbita moschata OX=3662 GN=LOC1114530... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 12..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G059830.1CcUC04G059830.1mRNA