CcUC04G059580 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G059580
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 647622 .. 647993 (-)
RNA-Seq ExpressionCcUC04G059580
SyntenyCcUC04G059580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTTATCATGCTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATTGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAAATTCTCTAAAAGTAGGAACTGTAGCTTCCAAAGTTGCTAGAGCAGGCACTGGTATTGAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAGGCAAGGAGAAAGAATAATGTTGTGATAAATGAAGTATCATATTGA

mRNA sequence

ATGTTTTGTTATCATGCTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATTGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAAATTCTCTAAAAGTAGGAACTGTAGCTTCCAAAGTTGCTAGAGCAGGCACTGGTATTGAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAGGCAAGGAGAAAGAATAATGTTGTGATAAATGAAGTATCATATTGA

Coding sequence (CDS)

ATGTTTTGTTATCATGCTGTGTTTGCGCATATAGTTGATTCCAACATATCATTGTGTTTTGGATTTGGAGCAGACCATCTAATTGGTCCTTTAGGCATGCAATTTAGAAAGGTTGAGGCAGGGGTTGGTGCCCTTGCACCTATTCCACTAACATCAAAAGTAGTAAACCCATCAGAGCTTGGAGGAAGGGAGATTGATGACTCAGGTACTTCGACAATAAATTCTCTAAAAGTAGGAACTGTAGCTTCCAAAGTTGCTAGAGCAGGCACTGGTATTGAATCGAGCATGATTCTAGAAGTTGCCATGAGCGTGGATGGAGAAGACAAGGCAAGGAGAAAGAATAATGTTGTGATAAATGAAGTATCATATTGA

Protein sequence

MFCYHAVFAHIVDSNISLCFGFGADHLIGPLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREIDDSGTSTINSLKVGTVASKVARAGTGIESSMILEVAMSVDGEDKARRKNNVVINEVSY
Homology
BLAST of CcUC04G059580 vs. NCBI nr
Match: KAE8649712.1 (hypothetical protein Csa_012861, partial [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-18
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 0

Query: 18  LCFGFGADHLIGPLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREI--DDSGTSTINS 77
           LC G GADH IGPLG+Q    +AG GALAPIPL SK++N SE+GGREI  DDSGTS I+S
Sbjct: 2   LCLGLGADHAIGPLGLQSNN-DAGNGALAPIPLGSKLINSSEVGGREIDDDDSGTSAIDS 61

Query: 78  LKVGTVASKVARAGTGIESSMILEVAMSVDGEDKARRKNNV 117
           LK+  V S     G   +SSM L VAM +DGED A RK NV
Sbjct: 62  LKLRMVDSSRVVGGCA-KSSMPLVVAMILDGEDMAMRKKNV 100

BLAST of CcUC04G059580 vs. NCBI nr
Match: KAG6581979.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 49/114 (42.98%), Postives = 60/114 (52.63%), Query Frame = 0

Query: 30  PLGMQFRKVEAGVGALAPIPLTSKVVNPSELGGREIDDSGTST----------------- 89
           P G  F +VE G+GALAP  L S+V  PSE+GG +IDD GTST                 
Sbjct: 10  PKGSGF-EVEEGIGALAPTLLGSEVAKPSEVGGIQIDDLGTSTDVVGAFVVVNGALEGTK 69

Query: 90  -------------INSLKVGTVASKVARAGTGIESSMILEVAMSVDGEDKARRK 114
                        +++L+VG VAS V RA T  ESSM LEVA S + ED  +RK
Sbjct: 70  LDPFNKKGWRSSAMDALEVGIVASNVVRACT--ESSMALEVATSEEEEDTVKRK 120

BLAST of CcUC04G059580 vs. NCBI nr
Match: KAE8649705.1 (hypothetical protein Csa_011947, partial [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 45  LAPIPLTSKVVNPSELGGREI--DDSGTSTINSLKVGTVASKVARAGTGIESSMILEVAM 104
           L P     K++N SE+GGREI  DDSGTS I+SLK+  V S     G   +SSM L VAM
Sbjct: 8   LHPFHWDQKLINSSEVGGREIDDDDSGTSAIDSLKLRMVDSSRVVGGCA-KSSMPLVVAM 67

Query: 105 SVDGEDKARRKNN 116
            ++GED A RK N
Sbjct: 68  ILNGEDMAMRKKN 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649712.16.2e-1861.39hypothetical protein Csa_012861, partial [Cucumis sativus][more]
KAG6581979.11.1e-0642.98OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1, partial [Cucurbita ar... [more]
KAE8649705.12.3e-0452.05hypothetical protein Csa_011947, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G059580.1CcUC04G059580.1mRNA