CcUC03G058840 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G058840
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Exonuclease domain-containing protein
Location	CicolChr03: 30713113 .. 30715542 (+)
RNA-Seq Expression	CcUC03G058840
Synteny	CcUC03G058840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGTTTAGCTATGTCCGATTTTCTTTTCTGAGAAGAAGAATAATAAAAGAAGCAACGAAACTAAAAATCCAAGGGGCAGTTTCTTCCGACCTCCATGTCTCCGAAGACCACTTCTCCATCTTCTTCCCCCCGATTTACAGCCCTTCTCTTTCTCTTTTAACTTACTTTTCTTCTGTTGGTTTTCAAATGCAGCATAATCCTTCCTCAGATATCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTGAAAAAAATGGTTCAAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGAAATCCGAATGTAAATAGTTTGAAGTTACTTAAGAATTTAACGGGTCGATTGCTGTTTTCACTGTAACCCCTTTTTTCAATCTGATGCAGCAGTGCTTAATTTGGACGTTTTAAGTTCGAGCGATCAATTGGTTTGCGTTCTTGGATTTTGTGTTTCTTTGATTTGTAGTGATGAATGATTGGAATTCTCTTTATGGAGTATTGGGGAAGGATTGGAGATGGCGGGAGTTGGGAGTGTTCTTGGCTAAATGGATTTGATTACAAAGTGTTTGTGAAAATGTCTTAAATGAGCTCGTGGAAAATAAATTCAACTTTTTTGTCTTTGACGTTATTTTGCTTGTTCTTTTGAGATCCTTCGGAGCTCTTAACTTCGTTGTTTTGTTTATATTTCTGGTTTTTCTGTTTGATAATCAATGTGAAGAAATTAAAGTTGATCTCTTTTTGTTTCTTGGTCTGATATGGTCTTATACATTGTTTGTCACCCCATTATCTACAGGTTGAAGAAAATTGCTTGCGATGCTGGATTTTCTCGGGTTTTCTGTCTAGATTTCCTCTTGTTGTGTTGTAAATTCCAATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTGTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCGGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGAATTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGTATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGTATCTAAATGTTCGTTCTGGTCTCATTTCTCTTATATATTATCCATTCAGCTCAGTGCTTGTTATAGTCATTTATCAATCATACATATTCAGACTTTTCTTTTCTATGTTCATATAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGACATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAGTCCTCCGGTTAGTTTTCCCTTTTCACATATTATCTTGCACTAGTTTCTCTGTGAATAAAAGGAATGATGTGATGTAATGTAATACTGTTGGCAATATCATGATCAGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGTGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAGTGTCTTAAGTTATGTGCACAAATCAATCATAACATAGTGATCAAGCTGTGCTTTTGTTGTAATGCTATTTGCTAATTGCTGTAACCTCAGTTCATTCTTATTAGCAAAATGTTGGGCCATTTTATTTATGGTCAGCAGATCTGCTTGATGTCCATATTCTCCGAAAACTAGTGCCTGAATTGGGATGTCATGACATATAGTTTTGTTTTCTTCTTTGAATGGATACTGAGATAAAAGTTGTTTATGAAGAAATATGAAAGGAAGATCTGTGTTCTGTATTGATATTGTTGGAAATGGCTGATGAATTGAACTACTTTCGG

mRNA sequence

GTAAGTTTAGCTATGTCCGATTTTCTTTTCTGAGAAGAAGAATAATAAAAGAAGCAACGAAACTAAAAATCCAAGGGGCAGTTTCTTCCGACCTCCATGTCTCCGAAGACCACTTCTCCATCTTCTTCCCCCCGATTTACAGCCCTTCTCTTTCTCTTTTAACTTACTTTTCTTCTGTTGGTTTTCAAATGCAGCATAATCCTTCCTCAGATATCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTGAAAAAAATGGTTCAAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGAAATCCGAATGTAAATAGTTTGAAGTTACTTAAGAATTTAACGGGTCGATTGCTGTTTTCACTGTAACCCCTTTTTTCAATCTGATGCAGCAGTGCTTAATTTGGACGTTTTAAGTTCGAGCGATCAATTGGTTTGCGTTCTTGGATTTTGTGTTTCTTTGATTTGTAGTGATGAATGATTGGAATTCTCTTTATGGAGTATTGGGGAAGGATTGGAGATGGCGGGAGTTGGGAGTGTTCTTGGCTAAATGGATTTGATTACAAAGTGTTTGTGAAAATGTCTTAAATGAGCTCGTGGAAAATAAATTCAACTTTTTTGTCTTTGACGTTATTTTGCTTGTTCTTTTGAGATCCTTCGGAGCTCTTAACTTCGTTGTTTTGTTTATATTTCTGGTTTTTCTGTTTGATAATCAATGTGAAGAAATTAAAGTTGATCTCTTTTTGTTTCTTGGTCTGATATGGTCTTATACATTGTTTGTCACCCCATTATCTACAGGTTGAAGAAAATTGCTTGCGATGCTGGATTTTCTCGGGTTTTCTGTCTAGATTTCCTCTTGTTGTGTTGTAAATTCCAATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTGTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCGGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGAATTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGTATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGACATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAGTCCTCCGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGTGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAGTGTCTTAAGTTATGTGCACAAATCAATCATAACATAGTGATCAAGCTGTGCTTTTGTTGTAATGCTATTTGCTAATTGCTGTAACCTCAGTTCATTCTTATTAGCAAAATGTTGGGCCATTTTATTTATGGTCAGCAGATCTGCTTGATGTCCATATTCTCCGAAAACTAGTGCCTGAATTGGGATGTCATGACATATAGTTTTGTTTTCTTCTTTGAATGGATACTGAGATAAAAGTTGTTTATGAAGAAATATGAAAGGAAGATCTGTGTTCTGTATTGATATTGTTGGAAATGGCTGATGAATTGAACTACTTTCGG

Coding sequence (CDS)

ATGATAACAGCTCCAATGTGCTTTTCGATCTTGCGAGTTCCGAAATTTGGAGTCCCTACTTTAGCTAATCTTTGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATAATCAGCTTGGTGTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACTAGAAAGTCTCTGACCACCAAAGCAGGGAGGAAAGCAAAAGCCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTAGAGGAATCGGTCTCAACAAGCTGTACAGTTAGCATTAATAAGTCTGAGAAAAGTGAAACTCAGAAGCTTCAATATTGTGATATTCAACAAACAATTATTAAGAATAAGGAATTGGCTCGCCCAGTTACGGTTATAACCTTTGACATTGAGACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCACTTCAAGATCTTTCAGGAGGAGAGTATAGCACCTTCCAAACATTAATAAATCCAGAGTGCTATATTCCAAATTCAGTTGTACATGGCATTACAAACCGTATGGTCAGTAGACCCGATGTTCCAAGGATGAAGGAACTTATTCCAATTTTATTACAATTTGTCAAAAGCCGTCAGAAACCTGATGGTGATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTGCCCTTTTTAGTCAAGGAATTCAGCCGTTGCTCCATTGACATTCCTCCAAATTGGCGATTTTTCGATAGTATTCCTTTAGCCCGTCAATTGATGAAGTCCTCCGATTCGAAGATTACAAAAATAACGTTACAAGCTCTTCGTGAGTATTACAGTATTCCAGTGGTGGGTTCAGCTCACAGAGCAATGTCGGACGTGTGGTCATTGTCGTTGATTTTTCAGAGGCTTACTTTCGACCTCAAGCTACGCATCCCAGATCTCATTGAAGGATCTTTCACTGCTTTAGATCTAATTAATAAGAAGAAAAACTAG

Protein sequence

MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSVVHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRLTFDLKLRIPDLIEGSFTALDLINKKKN

Homology

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BLAST of CcUC03G058840 vs. NCBI nr
Match: XP_038878496.1 (exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP_038878497.1 exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 593.6 bits (1529), Expect = 1.1e-165
Identity = 304/334 (91.02%), Postives = 313/334 (93.71%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MI APMCFSILR PKFGVPTLANLWRENFHPLNRN  HSSW++QLG RIYNLEGGQNKRW
Sbjct: 1   MILAPMCFSILRFPKFGVPTLANLWRENFHPLNRNCYHSSWHDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
            RKS+TTKAGRKAKANPSSKPTNIRNEILEES+STSCTVSINKSEKSETQKLQYCDIQQ 
Sbjct: 61  IRKSMTTKAGRKAKANPSSKPTNIRNEILEESISTSCTVSINKSEKSETQKLQYCDIQQL 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGE STFQTLINPECYIPNSV
Sbjct: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSR--QKPDGDVLLVAHNARTFDVPFLVKEFS 240
           VHGITN MVSRPDVPRMKELIPILLQFV+SR  QKPDG VLLVAHNARTFDVPFL+KEFS
Sbjct: 181 VHGITNHMVSRPDVPRMKELIPILLQFVESRQKQKPDGYVLLVAHNARTFDVPFLLKEFS 240

Query: 241 RCSIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSL 300
           RCS DIPPNWRFFDSIPLARQLMKSSDSKITKI+LQALREYY I +VGSAHRAMSDV SL
Sbjct: 241 RCSFDIPPNWRFFDSIPLARQLMKSSDSKITKISLQALREYYDIQLVGSAHRAMSDVRSL 300

Query: 301 SLIFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           SLI QRLTF+LKL I DLIE SFTA DLINKKKN
Sbjct: 301 SLILQRLTFELKLGISDLIERSFTASDLINKKKN 334

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BLAST of CcUC03G058840 vs. NCBI nr
Match: KAG6590475.1 (Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024006.1 Exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 587.0 bits (1512), Expect = 1.0e-163
Identity = 294/332 (88.55%), Postives = 316/332 (95.18%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG RIYNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           I+K+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHNARTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

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BLAST of CcUC03G058840 vs. NCBI nr
Match: XP_022961373.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 585.1 bits (1507), Expect = 3.8e-163
Identity = 293/332 (88.25%), Postives = 315/332 (94.88%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG R YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           I+K+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHNARTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CcUC03G058840 vs. NCBI nr
Match: XP_023515555.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.7 bits (1506), Expect = 5.0e-163
Identity = 293/332 (88.25%), Postives = 314/332 (94.58%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG RIYNLEGGQNKRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCT+SINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTISINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           I K+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 ITKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHNARTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKI KI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKIKKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CcUC03G058840 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 582.4 bits (1500), Expect = 2.5e-162
Identity = 295/331 (89.12%), Postives = 312/331 (94.26%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITA MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG RIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVSINKSEK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           IIK+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQFVKSRQKPDG VLLVAHNAR FDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKK 332
           I QRLTFDLKL IPDLIE SFT  DLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot
Match: Q682U6 (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.7e-63
Identity = 139/323 (43.03%), Postives = 204/323 (63.16%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L VR  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECY-IPNSVVHGI 185
           +L++ +TVI  D+ETTG  R  +RI+EIA QD++GG YSTFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot
Match: Q895K2 (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-14
Identity = 60/180 (33.33%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 134 ITFDIETTGFSRNLDRIVEI-ALQDLSGGEYSTFQTLINPECYIPNSVVH--GITNRMVS 193
           + FDIETTGFS   D+I+EI A++   G     + T +NPE  IP  ++   GI + MV 
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 194 RPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIPPNWRF 253
             D P+++E++P  + F++       D +LVAHNA  FDV F+ K      I    N   
Sbjct: 474 --DAPKIEEVLPKFIDFIE-------DSILVAHNA-NFDVSFIKKNCKDFGIHF--NNPI 533

Query: 254 FDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRLTFDLK 311
            D+IPL + L      ++ +  L  + ++  IP++ + HRA+ D  +   I  +   DLK
Sbjct: 534 LDTIPLCKFLY----PELKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFEDLK 576

[Close]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot
Match: Q8XJR3 (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-12
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 0


Query: 134 ITFDIETTGFSRNLDRIVEIALQDLSGGE-YSTFQTLINPECYIPNSVVH--GITNRMVS 193
           + FDIETTGFS   D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495

Query: 194 RPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIPPNWR- 253
               P + E++P  ++FV       G+ +LVAHNA  FDV F+ K      +D+    + 
Sbjct: 496 --GQPTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNL----MDMGKTLKN 555

Query: 254 -FFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSD 295
              D++PLAR L       + K+ L  + ++  I  + + HRA+ D
Sbjct: 556 PVMDTVPLARYLYPD----LKKVKLNLVAKHLGIS-LENHHRAVDD 582

[Close]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot
Match: Q8RA32 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=polC PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-11
Identity = 52/175 (29.71%), Postives = 88/175 (50.29%), Query Frame = 0


Query: 134 ITFDIETTGFSRNLDRIVEIALQDLSGGE-YSTFQTLINPECYIPNSV--VHGITNRMVS 193
           + FDIETTG S   D I+EI    +   +   TF+T +NP+  I + +  + GI   MV 
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMVK 448

Query: 194 RPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIPPNWRF 253
             D P ++E++P  L+F K         +LVAHNA  FDV F+  +  +  + +      
Sbjct: 449 --DAPLIEEVLPKFLEFAKG-------AVLVAHNA-NFDVSFIKSKAKKLGLTVENT--V 508

Query: 254 FDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 306
            D++ L+R L +     +    L  L E++ + ++   HRA+ D  + + IF ++
Sbjct: 509 LDTLELSRHLYQD----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKM 546

[Close]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot
Match: Q4L5W6 (DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=polC PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.9e-10
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 0


Query: 129 RPVTVITFDIETTGFSRNLDRIVEIALQDLSGGE-YSTFQTLINPECYIPNSVVH--GIT 188
           +  T + FD+ETTG S   D+I+E+A   +  GE    F+   NP   +  ++++   IT
Sbjct: 418 KEATYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHIT 477

Query: 189 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIP 248
           + M++  D P ++E++    ++V       GD + VAHNA +FD+ F+   + R     P
Sbjct: 478 DDMLT--DAPEIEEVLTEFKEWV-------GDAIFVAHNA-SFDMGFIDTGYERLGFG-P 537

Query: 249 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 308
                 D++ L+R +    +++  K  L  L + Y + +    HRA+ D  S + IF ++
Sbjct: 538 STNGVIDTLELSRTI----NTEYGKHGLNFLAKKYGVELT-QHHRAIYDTESTAYIFIKM 586

Query: 309 TFDLK 311
              +K
Sbjct: 598 VQQMK 586

[Close]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL
Match: A0A6J1HDU6 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461962 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.8e-163
Identity = 293/332 (88.25%), Postives = 315/332 (94.88%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG R YNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS++TKAGRKAK +PSSKP+NIRNEILEESVSTSCTVSINKSEK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           I+K+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQF+KSRQKPDG VLLVAHNARTFDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFT  DLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL
Match: A0A6J1HUD7 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467897 PE=4 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 295/331 (89.12%), Postives = 312/331 (94.26%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MITA MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWY+QLG RIYNLEGGQ+KRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRKAK NPSSKP+NIRNEILEESVSTSCTVSINKSEK  TQKLQ C+IQ+T
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
           IIK+KELARPVTVITFDIETTGFSR LDRIVEIALQDLSGGE STFQTLINPECYIPN+V
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMKELIPILLQFVKSRQKPDG VLLVAHNAR FDVPFL+KEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S+DIP NW FFD+I LARQLMKS+DSKITKI+LQALREYY+IP+VGSAHRAMSDV +LSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKK 332
           I QRLTFDLKL IPDLIE SFT  DLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL
Match: A0A6J1C1V8 (exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007515 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 2.0e-154
Identity = 280/332 (84.34%), Postives = 298/332 (89.76%), Query Frame = 0


Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWY+QL  RIYNLEGGQNKRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSLTTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQT 120
           TRKS+TTKAGRK K NPSSKP++IRNEILE SVSTSCTVSINK+EKSETQKLQYCDIQQT
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 IIKNKELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSV 180
             K KEL RPVTVI FDIETTGFSR  DRIVEIA QDLSGGE STFQTLINPECYIPNS+
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 VHGITNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRC 240
           VHGIT+RMVSRPDVPRMK+LIPILLQFV SRQKPDG +LLVAHNARTFDVPFL+ EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SIDIPPNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSL 300
           S DIP +W F D++ LARQLM SSDSK++KI+LQALREYYSIP+VGSAHRAMSDV SLSL
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 IFQRLTFDLKLRIPDLIEGSFTALDLINKKKN 333
           I QRLTFDLKL IPDLIE SFTA DLI K K+
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL
Match: A0A0A0LVY3 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.8e-142
Identity = 260/326 (79.75%), Postives = 283/326 (86.81%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WY+QL  RIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           TTKAG KAK NPSSKPTNIRNEIL+ES+  SCTV+INKSEKSETQKLQYCDIQ TIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSVVHGIT 185
           E A  VTVITFDIETTGFSRNLDRIVEIA QDLSGGE STFQTLINP+CYI NS +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIP 245
           NRMV  P VPRM+ELIPI+LQFVKSRQKP G VLLVAHNARTFDVPFL+ EFSR S+DIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 305
            NW FFD++ LARQLMK SDSKITKITLQAL EYY I + G AHRA+SDV  LS I QRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLRIPDLIEGSFTALDLINKKK 332
           TFDLKL I DL+E +FT LDLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL
Match: A0A0N9LRH7 (Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 4.0e-142
Identity = 260/326 (79.75%), Postives = 282/326 (86.50%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WY+QL  RIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           TTKAG KAK NPSSKPTNIRNEIL+ESV  SCTV+INKSEKSETQKLQYCDIQ TIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECYIPNSVVHGIT 185
           E A  VTVITFDIETTGFSRNLDRIVEIA QDLSGGE STFQTLINP+CYI NS +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 NRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDIP 245
           NRMV  P VP M+ELIPI+LQFVKSRQKP G VLLVAHNARTFDVPFL+ EFSR S+DIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 PNWRFFDSIPLARQLMKSSDSKITKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQRL 305
            NW FFD++ LARQLMK SDSKITKITLQAL EYY I + G AHRA+SDV  LS I QRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLRIPDLIEGSFTALDLINKKK 332
           TFDLKL I DL+E +FT LDLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]

BLAST of CcUC03G058840 vs. TAIR 10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-64
Identity = 139/323 (43.03%), Postives = 204/323 (63.16%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L VR  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECY-IPNSVVHGI 185
           +L++ +TVI  D+ETTG  R  +RI+EIA QD++GG YSTFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CcUC03G058840 vs. TAIR 10
Match: AT5G26940.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-64
Identity = 139/323 (43.03%), Postives = 204/323 (63.16%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L VR  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECY-IPNSVVHGI 185
           +L++ +TVI  D+ETTG  R  +RI+EIA QD++GG YSTFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CcUC03G058840 vs. TAIR 10
Match: AT5G26940.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-64
Identity = 139/323 (43.03%), Postives = 204/323 (63.16%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L VR  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECY-IPNSVVHGI 185
           +L++ +TVI  D+ETTG  R  +RI+EIA QD++GG YSTFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of CcUC03G058840 vs. TAIR 10
Match: AT5G26940.4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-64
Identity = 139/323 (43.03%), Postives = 204/323 (63.16%), Query Frame = 0


Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYNQLGVRIYNLEGGQNKRWTRKSL 65
           MC SI +V +  + +  +   E  H   +N   SS    L VR  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  TTKAGRKAKANPSSKPTNIRNEILEESVSTSCTVSINKSEKSETQKLQYCDIQQTIIKNK 125
           +T              +N ++ +L  +V  +  +     E+S T+   + ++QQ + ++K
Sbjct: 61  ST--------TTQGSRSNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGEYSTFQTLINPECY-IPNSVVHGI 185
           +L++ +TVI  D+ETTG  R  +RI+EIA QD++GG YSTFQTL+NP    I N+ +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TNRMVSRPDVPRMKELIPILLQFVKSRQKPDGDVLLVAHNARTFDVPFLVKEFSRCSIDI 245
            N MV RP+VPRM+ELIPI L++V+SRQKP G V+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PPNWRFFDSIPLARQLMKSSDSKI-TKITLQALREYYSIPVVGSAHRAMSDVWSLSLIFQ 305
           P NW   DS+PLAR+ MKS +  +    +L+AL +YYS+   G AHRA+SDV  LS +FQ
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLRIPDLIEGSFTALDL 327
           +LT DLKL + DL+    TA D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

The following BLAST results are available for this feature:

BLAST of CcUC03G058840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878496.1	1.1e-165	91.02	exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP...	[more]
KAG6590475.1	1.0e-163	88.55	Exonuclease DPD1, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_022961373.1	3.8e-163	88.25	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374...	[more]
XP_023515555.1	5.0e-163	88.25	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022968752.1	2.5e-162	89.12	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1...	[more]

BLAST of CcUC03G058840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682U6	2.7e-63	43.03	Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q895K2	1.8e-14	33.33	DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ...	[more]
Q8XJR3	6.4e-12	33.73	DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=...	[more]
Q8RA32	5.4e-11	29.71	DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongens...	[more]
Q4L5W6	5.9e-10	27.57	DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain JCSC1435) OX...	[more]

BLAST of CcUC03G058840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDU6	1.8e-163	88.25	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUD7	1.2e-162	89.12	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1C1V8	2.0e-154	84.34	exonuclease DPD1, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LVY3	1.8e-142	79.75	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080...	[more]
A0A0N9LRH7	4.0e-142	79.75	Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1	[more]

BLAST of CcUC03G058840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26940.1	1.9e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.2	1.9e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.3	1.9e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.4	1.9e-64	43.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 132..311 e-value: 5.0E-29 score: 112.4
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 135..295 e-value: 4.0E-19 score: 69.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 131..311 e-value: 1.2E-42 score: 147.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..82
None	No IPR available	PANTHER	PTHR13058:SF23	POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED	coord: 3..329
None	No IPR available	CDD	cd06127	DEDDh	coord: 136..303 e-value: 1.59225E-40 score: 137.817
IPR040393	Three-prime repair exonuclease 1/2	PANTHER	PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	coord: 3..329
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G058840.1	CcUC03G058840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000738	DNA catabolic process, exonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity