CcUC03G055230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G055230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	60S ribosomal protein L30
Location	CicolChr03: 27169350 .. 27171085 (-)
RNA-Seq Expression	CcUC03G055230
Synteny	CcUC03G055230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGAATTAGGGTTTTTTTGGCTGTTCAGTCGGCGAATTCAGCTTCTCTCAGCTTCCATCATGGTGACCGCCAAGAAGACGGTCAGTTTCTTCTTCCATTCCCGGCGATTTTGTGTTTCTTTCTTCCATTTTCGTTTCGAGTTTTGTGATTCTGACATTTTTCTTTCTTGTTACCTTTAACAGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGGTAAACCACTGAACGAACTTTCATCTCTGTGTTATTGATTTGATCTCTAGACTTAGCATCAACGGATGTTTGGCTGATCCCTTTTCATTATTGATATTCGGCTTATTTTTGAATTGATCAGTTTTAGCTGAAATTACTGCAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGTCGATCTGGAACTTTGTTTAGCCGATTTAGGTTACTAATTTGTGTTATCCCCATTATATGAAACTACTATATTAGCGTTTTTTGTTTGAGCAGTAAAGGGATCTGTAGTTTCTGATTTGTTTTGTTGTCCATGCTTTCTTGTAGCGTTTAGTATCTGCATTTTGTGGGTGTAACTGATTTTTGTTTGGTTTGCAGGTAAGCTGATCATTATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAATACTATGCGATGTTGGCGAAGGTTGGAGTTCACCATTACAACGGAAGTACGTTTCTAACCTTTTAAAAACAGGATTGGCCTTTTTTTGGTTCTAGGTTTGCATTTATTTGCCCTTTAGAATTAGACCATGTATCTATATCTACCTGCATTTTGTGAATTGAGTGAAAATTTCACATTGTTTCGATTCTTGGTTGCTGGATTTGTGTGATTTCTTATTGGCCTTTCCCTATGTAACTAAAGCACTTGCTTCGTGTCATGATTATGTTCATACCTTTGACTCTTTGTCATTTTTTTAAACAAGAAATGGGGTGTACAATAAAAAAAACCAGGCGGAAGGCCACGAAAGAACAACCTAGGGGCCGAGTAGAGATAGCCCCAATCCAGAAAGCCAATGAATACGAGCCTATTAATTGTTTAGGAAACAAAAGAATTTAAGATAGTCTTTTAACACTTTACCCTTATCATTCTATGGTGGTGCTTCTGGTTGTTATGCATTCAAAGTTGATTATCGTATTGGACTTCTCATGATCAAACCTTTCTTTTGTATGTTATCAGGCAATGTAGACCTCGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTATTCTTCCCGAAAATCCACTCTTCTACTTTTGGATTACTGCCTGAACATAATATTCTGATTAAGGTATTTTAATGTCTTCTTAGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAGGTTGCAGCTTCCTCTCATCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTAATCCACTTGATTTTGGGTTGAACGTAATGATGTGTTTTGCTTGAGGCATGATATTATTGAACGAATGGTTTCATTATAAACCCTTTCCTTATTTATGTTCGAGATCATCTTATTCCAGAAATCTTTCATTTCATAATTTTGGTGTTCTTACCCCAAAACAAGCATGTTGTCTCCAACTATTTATTTTATTGTGTCAACTTATCTGTTC

mRNA sequence

TCAAGAATTAGGGTTTTTTTGGCTGTTCAGTCGGCGAATTCAGCTTCTCTCAGCTTCCATCATGGTGACCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGTTTTAGCTGAAATTACTGCAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGTCGATCTGGAACTTTGTTTAGCCGATTTAGGTAAGCTGATCATTATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAATACTATGCGATGTTGGCGAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGACCTCGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAGGTTGCAGCTTCCTCTCATCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTAATCCACTTGATTTTGGGTTGAACGTAATGATGTGTTTTGCTTGAGGCATGATATTATTGAACGAATGGTTTCATTATAAACCCTTTCCTTATTTATGTTCGAGATCATCTTATTCCAGAAATCTTTCATTTCATAATTTTGGTGTTCTTACCCCAAAACAAGCATGTTGTCTCCAACTATTTATTTTATTGTGTCAACTTATCTGTTC

Coding sequence (CDS)

ATGGTGACCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAACTCTAAAGTTTTAGCTGAAATTACTGCAAGTTTCGATAAGCTGGAGAGAATGAAAGTGTTGTATGCTGTCGATCTGGAACTTTGTTTAGCCGATTTAGGTAAGCTGATCATTATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAATACTATGCGATGTTGGCGAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGACCTCGGAACCGCTTGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCTGGTGATTCGGATATTATCAAGAGCATGCCTGGAGAAAGTTAG

Protein sequence

MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVLYAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES

Homology

[Close]

BLAST of CcUC03G055230 vs. NCBI nr
Match: XP_038878626.1 (60S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 212.2 bits (539), Expect = 2.9e-51
Identity = 111/142 (78.17%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 112

Query: 121 VCCLSIIDPGDSDIIKSMPGES 143
           VCCLSIIDPGDSDIIKSMPGES
Sbjct: 121 VCCLSIIDPGDSDIIKSMPGES 112

[Close]

BLAST of CcUC03G055230 vs. NCBI nr
Match: XP_039052569.1 (60S ribosomal protein L30-like [Hibiscus syriacus])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 110/142 (77.46%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV  KKTKKTHESINNRL LVMKSGKYTLGYKTVLK+LRNSKVL +  A  ++L+ M  L
Sbjct: 1   MVATKKTKKTHESINNRLTLVMKSGKYTLGYKTVLKSLRNSKVL-DSAAHIEQLQMMGFL 60

Query: 61  -YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYY 120
            +  +++L    LGKLIIIANNCPPLRKSEIEYYAML KVGVHHYNG+NVDLGTACGKY+
Sbjct: 61  FFHGEVKLNGFHLGKLIIIANNCPPLRKSEIEYYAMLCKVGVHHYNGNNVDLGTACGKYF 120

Query: 121 RVCCLSIIDPGDSDIIKSMPGE 142
           RVC LSI+DPGDSDIIKSMPGE
Sbjct: 121 RVCFLSIVDPGDSDIIKSMPGE 141

[Close]

BLAST of CcUC03G055230 vs. NCBI nr
Match: KAF2300088.1 (hypothetical protein GH714_008128 [Hevea brasiliensis])

HSP 1 Score: 211.5 bits (537), Expect = 4.9e-51
Identity = 106/141 (75.18%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK           LE M +L
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGRYTLGYKTVLKSLRNSK----------DLEEMNLL 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                +  + ++ KL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Sbjct: 61  LVFKSKTLIGEVRKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 120

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSIIDPGDSDIIKSMP +
Sbjct: 121 VCCLSIIDPGDSDIIKSMPSD 131

[Close]

BLAST of CcUC03G055230 vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7022349.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-51
Identity = 110/142 (77.46%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 112

Query: 121 VCCLSIIDPGDSDIIKSMPGES 143
           VCCLSIIDPGDSDIIKS+PGES
Sbjct: 121 VCCLSIIDPGDSDIIKSLPGES 112

[Close]

BLAST of CcUC03G055230 vs. NCBI nr
Match: KCW87293.1 (hypothetical protein EUGRSUZ_B03786 [Eucalyptus grandis])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 108/140 (77.14%), Postives = 111/140 (79.29%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKV+                
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVVLS-------------- 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYR
Sbjct: 61  ------------GKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYR 114

Query: 121 VCCLSIIDPGDSDIIKSMPG 141
           VCCLSIIDPGDSDIIKSMPG
Sbjct: 121 VCCLSIIDPGDSDIIKSMPG 114

[Close]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-51
Identity = 103/141 (73.05%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSI+DPGDSDIIK++PG+
Sbjct: 121 VCCLSIVDPGDSDIIKTLPGD 111

[Close]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-48
Identity = 99/141 (70.21%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++K                  
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSIID GDSDIIKS+PG+
Sbjct: 121 VCCLSIIDAGDSDIIKSIPGD 111

[Close]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-46
Identity = 94/141 (66.67%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                  
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Sbjct: 61  ------------GKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           V CLSI+DPGDSDIIKS+PG+
Sbjct: 121 VSCLSIVDPGDSDIIKSIPGD 111

[Close]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-45
Identity = 93/141 (65.96%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+R
Sbjct: 61  ------------GKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           V CLSI+DPGDSDIIKS+PG+
Sbjct: 121 VSCLSIVDPGDSDIIKSLPGD 111

[Close]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot
Match: O48558 (60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-45
Identity = 93/141 (65.96%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV  KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK                  
Sbjct: 1   MVATKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                        KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+R
Sbjct: 61  ------------SKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSIIDPGDSDIIK+ PGE
Sbjct: 121 VCCLSIIDPGDSDIIKTTPGE 111

[Close]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL
Match: A0A6A6LIK2 (Ribosomal_L7Ae domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_008128 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 106/141 (75.18%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSG+YTLGYKTVLK+LRNSK           LE M +L
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGRYTLGYKTVLKSLRNSK----------DLEEMNLL 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                +  + ++ KL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Sbjct: 61  LVFKSKTLIGEVRKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 120

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSIIDPGDSDIIKSMP +
Sbjct: 121 VCCLSIIDPGDSDIIKSMPSD 131

[Close]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.1e-51
Identity = 110/142 (77.46%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 112

Query: 121 VCCLSIIDPGDSDIIKSMPGES 143
           VCCLSIIDPGDSDIIKS+PGES
Sbjct: 121 VCCLSIIDPGDSDIIKSLPGES 112

[Close]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL
Match: A0A6J1H9H7 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.1e-51
Identity = 110/142 (77.46%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 112

Query: 121 VCCLSIIDPGDSDIIKSMPGES 143
           VCCLSIIDPGDSDIIKS+PGES
Sbjct: 121 VCCLSIIDPGDSDIIKSLPGES 112

[Close]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL
Match: A0A059D972 (Ribosomal_L7Ae domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03786 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.9e-51
Identity = 108/140 (77.14%), Postives = 111/140 (79.29%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKV+                
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVVLS-------------- 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYR
Sbjct: 61  ------------GKLVIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYR 114

Query: 121 VCCLSIIDPGDSDIIKSMPG 141
           VCCLSIIDPGDSDIIKSMPG
Sbjct: 121 VCCLSIIDPGDSDIIKSMPG 114

[Close]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL
Match: A0A6J1DXV1 (60S ribosomal protein L30 OS=Momordica charantia OX=3673 GN=LOC111024087 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 109/141 (77.30%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK                  
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR
Sbjct: 61  ------------GKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           VCCLSIIDPGDSDIIKS+PGE
Sbjct: 121 VCCLSIIDPGDSDIIKSIPGE 111

[Close]

BLAST of CcUC03G055230 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-47
Identity = 94/141 (66.67%), Postives = 106/141 (75.18%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MVT KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SK                  
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+R
Sbjct: 61  ------------GKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           V CLSI+DPGDSDIIKS+PG+
Sbjct: 121 VSCLSIVDPGDSDIIKSIPGD 111

[Close]

BLAST of CcUC03G055230 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46
Identity = 93/141 (65.96%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV AKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+R
Sbjct: 61  ------------GKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           V CLSI+DPGDSDIIKS+PG+
Sbjct: 121 VSCLSIVDPGDSDIIKSLPGD 111

[Close]

BLAST of CcUC03G055230 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-45
Identity = 90/141 (63.83%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 1   MVTAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKVLAEITASFDKLERMKVL 60
           MV  KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SK                  
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSK------------------ 60

Query: 61  YAVDLELCLADLGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYR 120
                       GKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+R
Sbjct: 61  ------------GKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFR 111

Query: 121 VCCLSIIDPGDSDIIKSMPGE 142
           V CLSI+DPGDSDIIK++PG+
Sbjct: 121 VSCLSIVDPGDSDIIKTLPGD 111

The following BLAST results are available for this feature:

BLAST of CcUC03G055230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878626.1	2.9e-51	78.17	60S ribosomal protein L30 [Benincasa hispida]	[more]
XP_039052569.1	3.7e-51	77.46	60S ribosomal protein L30-like [Hibiscus syriacus]	[more]
KAF2300088.1	4.9e-51	75.18	hypothetical protein GH714_008128 [Hevea brasiliensis]	[more]
XP_022960585.1	6.4e-51	77.46	60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosoma...	[more]
KCW87293.1	1.4e-50	77.14	hypothetical protein EUGRSUZ_B03786 [Eucalyptus grandis]	[more]

BLAST of CcUC03G055230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49884	3.9e-51	73.05	60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1	[more]
Q9M5M6	3.1e-48	70.21	60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1	[more]
Q8VZ19	4.9e-46	66.67	60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1	[more]
Q9C8F7	1.9e-45	65.96	Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P...	[more]
O48558	5.4e-45	65.96	60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1	[more]

BLAST of CcUC03G055230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6LIK2	2.4e-51	75.18	Ribosomal_L7Ae domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_...	[more]
A0A6J1JJ11	3.1e-51	77.46	60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ...	[more]
A0A6J1H9H7	3.1e-51	77.46	60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=...	[more]
A0A059D972	6.9e-51	77.14	Ribosomal_L7Ae domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRS...	[more]
A0A6J1DXV1	1.2e-50	77.30	60S ribosomal protein L30 OS=Momordica charantia OX=3673 GN=LOC111024087 PE=3 SV...	[more]

BLAST of CcUC03G055230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77940.1	3.5e-47	66.67	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G36240.1	1.3e-46	65.96	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G18740.1	4.3e-45	63.83	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 73..135 e-value: 6.2E-14 score: 51.5
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 2..138 e-value: 1.0E-49 score: 168.6
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 6..138
None	No IPR available	PANTHER	PTHR11449:SF23	60S RIBOSOMAL PROTEIN L30	coord: 1..49
None	No IPR available	PANTHER	PTHR11449:SF23	60S RIBOSOMAL PROTEIN L30	coord: 69..142
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 1..49
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 69..142
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 110..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G055230.1	CcUC03G055230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome