CcUC03G054430 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G054430
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description60s ribosomal protein l2, mitochondrial
LocationCicolChr03: 25365565 .. 25367939 (-)
RNA-Seq ExpressionCcUC03G054430
SyntenyCcUC03G054430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTCTTCCTTTTTACGTATGGCATCGCCACTCCCTGGAAGGGGGCACTAAAATGGAACTTCGATCGGATGCGGGTATCCAATTCCGCCGCTGAGATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTATGGAAGAGAGTCGGCCCACTTTTAGCCGTTCCAGCACTTTTTGGTGAATCATCATCGGGAAAGCCATCTAAGGTCAAGCGCAAGCGTGAATTCTGTTGGTAGCTTTTCTATGATGAGTTTTTCACTCATTCCCAACCCAAACTCTTTACTACCAGTAGCAACGTTCAGAGATTCTATCAACGCATTTCTATTGAGATCATAGGGCTGCCCCGTTGGTGGATAAGGTGCTTAAACGCCTAGCTGATTGGAAAGGAAAAGCGTTGAGCCCGTAAGGGCGCAAAACTCTAATCTAGTCTACCACTTCGGCCCCAGATCAGATGTGGCATTCTTGTCAAAATGAATCTCAGATGTCGATCAATCCCAATCTATCCCATTCGTACCATTAAGATTCTATTAGTATGAAGAGCGGAAAAGATTACCAGCTGTAGCGGTTGATGAATTAGGAGACCTAATCCCCAAACCCATCTCTCATTAGCGAAAGCTACCTACCTCGTTTTGCGGAAGCTCTGCCAGTATAGCACGGTGCTCTTTGATTTTGTCTTTCTCTCGATTCGCTGAACACTTCCAATACCGGTCCGCTATGAGCAAAGCGAATAGAGGAAGGCCCGGACCGTTCCGGGAGTACCAACTTAGCCCTATACACATGCTTTCTATGGTTTAATTAACTAACAATCAAATTCTAATTAATTAGTAAACCATGTTACATGCATTTTTATGACATTAATATAACAATTTATGTTAAACTATGGATGTGTCATGCTCAATGCAAATTAATTTTCAAATAATATAACACTTATATTAAAGAATTCATGAAAATCAATCAAGCATTTATAAAACATTAATAAATATAACTCTTTATATTTACCTAAGTAATGTCATGTATCATGCTTTTTCAATTTCATACATTTAATATATTAACATACATTAAATAACTCATAAAGTCATTTAGCATGCATTAATATCATATGTTATAACATTTATAATATAATAAAATGCATGAAAATACTCAACCTATGGTGGGATTTATCTAAATGACATACATAAAGCATTTAAATAGCAAATGAACTAGTAATTTGACCCCTAGGATAAAATAAAGCAAAAAATTGCATTAATTATACTTAATTTATCCTAAAATATCTTTTGCCACTCCAGACCGGACCAAACCAACTCGAATCGCTTCAAACCAAACCTTAAAACCACGAACCAAGCCAACCAAGCACAAAACTGGACTTGGCCAGCTTGAACTCAGCCGAACTGGACCAGGACCACTCTCATAAACCCTAATGAAAAAGTGTCAGTGTAGCCATCTGGAATCAAATTTGAGCAATTCCACGACAATTCATTCATTTAGGCCAAAATTGTTCTCAGTCTTTATGGCAGAATGTCCCCGATTCAGACACGGACTTACAAAAAATCAATTTACAATAAAATAACCAAAAAAAGTAGGGGCCTTTACAATTGATCGTATAAATAAAAAAAAATGTAAATATATGGCCAAATTATGGTAAGCATTCATTCCCAAAAAAAACTGGCATTCCAGATGCATTTAACCAACCAAACCAGTTCAAATTTCAAAATTCCTAAGACAATTTAACGAGATGGCTCTGATACCAATTGATGGAATGAAAACGCAATGAAAAAACAGACGAAATCGAACTTGATCGGGAAAATTGAGAGACCATTACACTGGAAAAAGAAATAAATTTGTAAGTTAAACATGCAATCTTGGGACTTTTTTGTGTAAAAGTTTCCAAATTTATCAGTTTGAAACTTAATTAAAAATCTCTAATCCACAAAATTCAGAAACTTAATACCTTAATTCAATCAATTTTAGATCGAGTTTACCCAAATTAGATTTCAACGACTTAAATAACTAAGTTGGTTGGAGGTGACCACTAGTAGGGAGAGATTAACCATTAAACACTAAAAATGCATTTTTCTAAAAGTTGGTTTCAAGTGTTTATCTTAAATCAACTAATTTTATAAACTCAGTTATTTAAAATCCATTTTAAATGGTTACCAAACACTTAGAATCTTTCTAAAATGACTTATTTATTATTATTATTATTTAAATCAAACACTTGAAAATGCATTACACACCTTAAAAAATTTTTAATATACAACAATTCTTTGATTATTCTCCTTCAGTTTGTAGCTTCTTCTTCAATTGATTTTTCTTTGGGCTCAATCTAGAACTTTTCTAGAAATAAGGAGAGTGAGCGAGAAGTAA

mRNA sequence

ATGAGTCTCTTCCTTTTTACGTATGGCATCGCCACTCCCTGGAAGGGGGCACTAAAATGGAACTTCGATCGGATGCGGGTATCCAATTCCGCCGCTGAGATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTATGGAAGAGAGTCGGCCCACTTTTAGCCGTTCCAGCACTTTTTGGGCTGCCCCGTTGGTGGATAAGGTGCTTAAACGCCTAGCTGATTGGAAAGGAAAAGCGTTGAGCCCAACTTTTCTAGAAATAAGGAGAGTGAGCGAGAAGTAA

Coding sequence (CDS)

ATGAGTCTCTTCCTTTTTACGTATGGCATCGCCACTCCCTGGAAGGGGGCACTAAAATGGAACTTCGATCGGATGCGGGTATCCAATTCCGCCGCTGAGATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTATGGAAGAGAGTCGGCCCACTTTTAGCCGTTCCAGCACTTTTTGGGCTGCCCCGTTGGTGGATAAGGTGCTTAAACGCCTAGCTGATTGGAAAGGAAAAGCGTTGAGCCCAACTTTTCTAGAAATAAGGAGAGTGAGCGAGAAGTAA

Protein sequence

MSLFLFTYGIATPWKGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESRPTFSRSSTFWAAPLVDKVLKRLADWKGKALSPTFLEIRRVSEK
Homology
[Close]
BLAST of CcUC03G054430 vs. NCBI nr
Match: OVA06704.1 (Ribosomal protein L2 [Macleaya cordata])

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 13  PWKGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATF 49
           P  GALKWNFDRMRVSN AAEMSSGFLG+DEWPATF
Sbjct: 293 PVVGALKWNFDRMRVSNPAAEMSSGFLGLDEWPATF 328

[Close]
BLAST of CcUC03G054430 vs. NCBI nr
Match: GER48854.1 (ribosomal protein L2 [Striga asiatica])

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 13  PWKGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATF 49
           P  GALKWNFDRMRVSN AAEMSSGFLG+DEWPATF
Sbjct: 125 PVVGALKWNFDRMRVSNPAAEMSSGFLGLDEWPATF 160

[Close]
BLAST of CcUC03G054430 vs. NCBI nr
Match: OIT06415.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 15  KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESRPTFSRSS 61
           +GALK NFDRMRVSN AAEMSSGFLG+DEWPATF      T  R S
Sbjct: 168 RGALKCNFDRMRVSNPAAEMSSGFLGLDEWPATFYRGQAVTIERLS 213

[Close]
BLAST of CcUC03G054430 vs. NCBI nr
Match: PKI31774.1 (hypothetical protein CRG98_047835 [Punica granatum])

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-08
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 15  KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESRPTFSRSS 61
           +GALKWNFDRMRVSN AAEMSSGFLG+DEW AT       T  R S
Sbjct: 160 RGALKWNFDRMRVSNPAAEMSSGFLGLDEWAATLYRGQAVTIERLS 205

[Close]
BLAST of CcUC03G054430 vs. NCBI nr
Match: OIT27644.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 7   TYGIATPW--KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESR 54
           TY +  P   +GALK NFDRMRVSN AAEMSSGFLG+DEWPATF +  +
Sbjct: 158 TYKVDPPLYVRGALKCNFDRMRVSNPAAEMSSGFLGLDEWPATFYQRGQ 206

[Close]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match: A0A5A7QUE9 (Ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_26059 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 13  PWKGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATF 49
           P  GALKWNFDRMRVSN AAEMSSGFLG+DEWPATF
Sbjct: 125 PVVGALKWNFDRMRVSNPAAEMSSGFLGLDEWPATF 160

[Close]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match: A0A200Q8E8 (Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 13  PWKGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATF 49
           P  GALKWNFDRMRVSN AAEMSSGFLG+DEWPATF
Sbjct: 293 PVVGALKWNFDRMRVSNPAAEMSSGFLGLDEWPATF 328

[Close]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match: A0A1J6J9A5 (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_1 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 15  KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESRPTFSRSS 61
           +GALK NFDRMRVSN AAEMSSGFLG+DEWPATF      T  R S
Sbjct: 168 RGALKCNFDRMRVSNPAAEMSSGFLGLDEWPATFYRGQAVTIERLS 213

[Close]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match: A0A2I0HJB4 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_047835 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 15  KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESRPTFSRSS 61
           +GALKWNFDRMRVSN AAEMSSGFLG+DEW AT       T  R S
Sbjct: 160 RGALKWNFDRMRVSNPAAEMSSGFLGLDEWAATLYRGQAVTIERLS 205

[Close]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match: A0A1J6KG38 (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_3 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 7   TYGIATPW--KGALKWNFDRMRVSNSAAEMSSGFLGVDEWPATFMEESR 54
           TY +  P   +GALK NFDRMRVSN AAEMSSGFLG+DEWPATF +  +
Sbjct: 158 TYKVDPPLYVRGALKCNFDRMRVSNPAAEMSSGFLGLDEWPATFYQRGQ 206

The following BLAST results are available for this feature:
BLAST of CcUC03G054430 vs. NCBI nr
Match NameE-valueIdentityDescription
OVA06704.15.3e-0988.89Ribosomal protein L2 [Macleaya cordata][more]
GER48854.15.3e-0988.89ribosomal protein L2 [Striga asiatica][more]
OIT06415.12.6e-0871.7460s ribosomal protein l2, mitochondrial [Nicotiana attenuata][more]
PKI31774.13.5e-0869.57hypothetical protein CRG98_047835 [Punica granatum][more]
OIT27644.14.5e-0867.3560s ribosomal protein l2, mitochondrial [Nicotiana attenuata][more]
BLAST of CcUC03G054430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QUE92.6e-0988.89Ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_26059 PE=4 SV=1[more]
A0A200Q8E82.6e-0988.89Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=3 SV=1[more]
A0A1J6J9A51.3e-0871.7460s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_... [more]
A0A2I0HJB41.7e-0869.57Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_047835 PE=4 SV=1[more]
A0A1J6KG382.2e-0867.3560s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_... [more]
BLAST of CcUC03G054430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G054430.1CcUC03G054430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome