CcUC03G053330 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G053330
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionTATA-box-binding protein
LocationCicolChr03: 22175273 .. 22177731 (+)
RNA-Seq ExpressionCcUC03G053330
SyntenyCcUC03G053330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAACTCCCATCCTCTCTCCATATTGTTCTTCTCTTTCGAAACCAAACCTCGAAGCTCTCTCCTTCATCTCCCTTTCTCAAATAATTCAGATATAAAACACCTCGCTTTTCAAATTCTTCCCGCTTCCTCACCCATTAATCCTTCCTAATTATCATCAAAATTTACCTTTCCGATCGACAGGAAATTCTTCGCCCAATTCTAGGGTTTCCTATTTGCAAGAGGTCTGTATCTTGGTTTGTTTTGTGATCCACAGATCGTGTGTGTTGGGGGGGGGGGGGGGGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTGATTTAGCTTTTTGTTGGGTTTGTGTCTTCCTTTCTCAGTTGGCATCTAGGGTATGTTTTGATTAGATTTGCCTTTGTTGGTCGTTGTGGGTTGTTGTACATATCTCGAGAGGATGGGTTTTTTGTACACGGTATAGTGGACTGGGCTTCTATGATCTCTGTATTTCGTTTGACCTTTATCGTTAATTTGATAAGTGCGGCTGTGATTTCCGTACGTGATGTATGGATTACTATTTTCAGTTCATTAATAGGCATGGAGTCTTGGGTTATTTATAATATAAGGATATTTTGTCCTGATTTTGGGCTTGAGGGATTGAAGAGTGGTGGGTTTATTACTTTTGATTTTGTTGTAATAATTATTTTGGAGAAAGAATTTAAAGAAAGTGGAGTTCTGTCGTGCAGAGATTTCTTATAACGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCTGTTGATCTTAAAAAGCATCCTTCTGGGATTGTACCTACTCTTCAGTGAGTTCTCACTTTTCCAACTGCTTGTGCCTTCTGATTCTGTACGATAGCTATTTTTTGTTGTCATATATTATAGCGTTTCATCAGTATTTAATGGTGGTTATATAGTATATGTATAGCAACTTTCAATAAGTAATTGGTATCATGGACGTTTTTAGTGATGCATCCAGAAATTGGGTTACTCTGGAAAAGAGAGTAGTTTAACTTTTCGGCCTAAGCTCCATATGAACCTCTAATATTGACCTGGTGTGATTCTTTTAGACTCTCCAGTTTTGAAATATTCAAGAAGATTCATCCAATCTCTTTCTCCCCCCATCTCTCTCTCTCTCTCGTGTGCACACACATAGGTAATATCAGAGATAAATTGAAGTTCTAAGATTCAGTTACATCCACCAAGAAATTTAATGAGTTCACAAATCTCTTATTAGTTTGAATAGTTATTTAGGAATATATAAATTCGTCTATATATGATATATCTACCAATCTCTTTCTCCCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTTACAAAAAACATGGCTGCAGATTTTGGTATTACGAGAATTCCATTGAAGTTCTAACTTCTAAGAATGAGTTACATCCACAAAAAGATTTAATGAGTTCACAAATCTCTTATTAATTTGTCTATACATTAATATAAAGATAATTCTGATATAGATCGAAATTAACAAGTAAGAATTTGTCAAGATTTATGGTCTAGAATAGTCTTTGTAATATTTCCAATAATAATTCAGAGAAGATTCTCCCTTCCTGACAAAATTGTCATATATAACTGCAATATGTGATAACTGGTAACTAAGGTAAAAGCATATTCTTGCTGAATAAATTAGTTTGGTAAAGACTTAGCTATGGAGCATAAACACTTTGGTTTGGTTAATGTATTCGTGTTAGATGCATCTACATTTGTGCACTTGTTAAGCATAGTTTGAAATGTGTCAAACATCAGTTTAAAGTTATAAACACACTTTGGACACTTGTGAACATCTCAAGAGTGTAGTTCATCATAAATTCTTTGTATAAGCATTATTGACTTTAAATTTATTTTCATTTTTTTTGTTAATATGTAAAATTGTTTAGGAAATTGATAAGTTGGCTTGAATGTAAATATTTTTACATGGAGTGTTGTAATCATATCATAACAGTTTTAATACAAGTTTAATACAAACAAGGCTGGGTTGGGTTCTCTATTTGCTATTTCAACTGCCTTTTCTGAAGTTATGTAGGCATCAAATGTCTATTTATTTTGGCTTTACATGATTAGGTACTCCCTTTATGTTCTATCTTTTTTTATATTTCTTTGATGAATGTAAATGTATATTGTTTCTAGGAACATTGTGTCAACAGTGAATCTGGATTGCAAATTGGATCTGAAGGCCATTGCTCTCCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAATTAGTCAATGTAGAGTT

mRNA sequence

ACGAACTCCCATCCTCTCTCCATATTGTTCTTCTCTTTCGAAACCAAACCTCGAAGCTCTCTCCTTCATCTCCCTTTCTCAAATAATTCAGATATAAAACACCTCGCTTTTCAAATTCTTCCCGCTTCCTCACCCATTAATCCTTCCTAATTATCATCAAAATTTACCTTTCCGATCGACAGGAAATTCTTCGCCCAATTCTAGGGTTTCCTATTTGCAAGAGAGATTTCTTATAACGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCTGTTGATCTTAAAAAGCATCCTTCTGGGATTGTACCTACTCTTCAGAACATTGTGTCAACAGTGAATCTGGATTGCAAATTGGATCTGAAGGCCATTGCTCTCCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAATTAGTCAATGTAGAGTT

Coding sequence (CDS)

ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCTGTTGATCTTAAAAAGCATCCTTCTGGGATTGTACCTACTCTTCAGAACATTGTGTCAACAGTGAATCTGGATTGCAAATTGGATCTGAAGGCCATTGCTCTCCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

Protein sequence

MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL
Homology
[Close]
BLAST of CcUC03G053330 vs. NCBI nr
Match: KAG7022001.1 (TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL 60
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG L
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGVL 60

[Close]
BLAST of CcUC03G053330 vs. NCBI nr
Match: KAA0055733.1 (TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 59
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 58

[Close]
BLAST of CcUC03G053330 vs. NCBI nr
Match: KAG6588117.1 (TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. NCBI nr
Match: TYK09982.1 (TATA-box-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. NCBI nr
Match: XP_004144066.1 (TATA-box-binding protein [Cucumis sativus] >XP_008450995.1 PREDICTED: TATA-box-binding protein [Cucumis melo] >XP_022147635.1 TATA-box-binding protein [Momordica charantia] >XP_022933932.1 TATA-box-binding protein [Cucurbita moschata] >XP_022961121.1 TATA-box-binding protein [Cucurbita moschata] >XP_022968327.1 TATA-box-binding protein [Cucurbita maxima] >XP_022987321.1 TATA-box-binding protein [Cucurbita maxima] >XP_023515908.1 TATA-box-binding protein [Cucurbita pepo subsp. pepo] >XP_023531923.1 TATA-box-binding protein [Cucurbita pepo subsp. pepo] >XP_038879585.1 TATA-box-binding protein [Benincasa hispida] >XP_038879586.1 TATA-box-binding protein [Benincasa hispida] >KAG7023737.1 TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN66345.1 hypothetical protein Csa_006854 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match: P26357 (TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match: Q42808 (TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDL+KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match: P28148 (TATA-box-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TBP2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-23
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match: P28147 (TATA-box-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=TBP1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-23
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match: P50159 (TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 9.4e-23
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MA+ GLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MAEPGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match: A0A5A7UIK5 (TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001180 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 59
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASG 58

[Close]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match: A0A6J1JDU6 (TATA-box-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111484910 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match: A0A6J1H9G6 (TATA-box-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111461727 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match: A0A5D3CF95 (TATA-box-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001120 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match: A0A0A0LWT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599390 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. TAIR 10
Match: AT1G55520.1 (TATA binding protein 2 )

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. TAIR 10
Match: AT1G55520.2 (TATA binding protein 2 )

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. TAIR 10
Match: AT3G13445.1 (TATA binding protein 1 )

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-24
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. TAIR 10
Match: AT3G13445.2 (TATA binding protein 1 )

HSP 1 Score: 107.1 bits (266), Expect = 5.1e-24
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]
BLAST of CcUC03G053330 vs. TAIR 10
Match: AT3G13440.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1  MADQGLEGAQPVDLKKHPSGIVPT 25
          MADQGLE + P+DL KHPSGIVPT
Sbjct: 1  MADQGLEESNPMDLSKHPSGIVPT 24

The following BLAST results are available for this feature:
BLAST of CcUC03G053330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022001.14.8e-2498.33TATA-box-binding protein [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0055733.11.4e-23100.00TATA-box-binding protein isoform X2 [Cucumis melo var. makuwa][more]
KAG6588117.15.8e-22100.00TATA-box-binding protein, partial [Cucurbita argyrosperma subsp. sororia][more]
TYK09982.15.8e-22100.00TATA-box-binding protein [Cucumis melo var. makuwa][more]
XP_004144066.15.8e-22100.00TATA-box-binding protein [Cucumis sativus] >XP_008450995.1 PREDICTED: TATA-box-b... [more]
BLAST of CcUC03G053330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P263578.5e-2496.36TATA-box-binding protein OS=Solanum tuberosum OX=4113 GN=TBP PE=2 SV=1[more]
Q428081.4e-2394.55TATA-box-binding protein OS=Glycine max OX=3847 GN=TBP1 PE=2 SV=1[more]
P281483.2e-2394.55TATA-box-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=TBP2 PE=1 SV=1[more]
P281477.2e-2392.73TATA-box-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=TBP1 PE=1 SV=1[more]
P501599.4e-2392.73TATA-box-binding protein 2 OS=Zea mays OX=4577 GN=TBP2 PE=2 SV=1[more]
BLAST of CcUC03G053330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UIK56.7e-24100.00TATA-box-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A6J1JDU62.8e-22100.00TATA-box-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111484910 PE=3 SV=1[more]
A0A6J1H9G62.8e-22100.00TATA-box-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111461727 PE=3 SV=1[more]
A0A5D3CF952.8e-22100.00TATA-box-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0LWT42.8e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599390 PE=3 SV=1[more]
BLAST of CcUC03G053330 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55520.12.3e-2494.55TATA binding protein 2 [more]
AT1G55520.22.3e-2494.55TATA binding protein 2 [more]
AT3G13445.15.1e-2492.73TATA binding protein 1 [more]
AT3G13445.25.1e-2492.73TATA binding protein 1 [more]
AT3G13440.13.1e-0579.17S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000814TATA-box binding proteinPRINTSPR00686TIFACTORIIDcoord: 25..40
score: 78.59
coord: 49..60
score: 32.13
IPR000814TATA-box binding proteinPFAMPF00352TBPcoord: 24..56
e-value: 1.3E-8
score: 34.7
IPR000814TATA-box binding proteinPANTHERPTHR10126TATA-BOX BINDING PROTEINcoord: 1..55
IPR012295TBP domain superfamilyGENE3D3.30.310.10coord: 11..59
e-value: 1.2E-13
score: 52.4
NoneNo IPR availablePANTHERPTHR10126:SF48TATA-BOX-BINDING PROTEIN 1coord: 1..55
NoneNo IPR availableSUPERFAMILY55945TATA-box binding protein-likecoord: 20..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G053330.1CcUC03G053330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0006413 translational initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003743 translation initiation factor activity