CcUC03G053140 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G053140
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 21277652 .. 21278017 (-)
RNA-Seq ExpressionCcUC03G053140
SyntenyCcUC03G053140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAACTTTTTTCAATTGGATCTTCGCAACACCACAATGGACGTGGAAGCCGCCAAAGCCAACGCTTGCAGTTGGTGGAAGCATCTGTGGAAGAAATTTGGAAGGGGTTCTCAGAGATGCAGCAATCTTTGACACAAATAACCGACCTTCTAACTCGATTTAACATCATACCGATTGGAGAAAATCCACGAAGAAATGAAGCTTTACGAAATCCTCCAGCAAGAAACTCTCAAGCAAGAAATCACCAGCATCAAGAACTTCAAGATTTGCCTCCAAGAAACCAGGCTGCCAACCTCCCTGTCCAAATACATAACAACCAGCTCTATGGCAACCATTTTCCTGGTTTTATGGTGGATGATTAA

mRNA sequence

ATGCTTGAACTTTTTTCAATTGGATCTTCGCAACACCACAATGGACGTGGAAGCCGCCAAAGCCAACGCTTGCAGTTGGTGGAAGCATCTGTGGAAGAAATTTGGAAGGGGTTCTCAGAGATGCAGCAATCTTTGACACAAATAACCGACCTTCTAACTCGATTTAACATCATACCGATTGGAGAAAATCCACGAAGAAATGAAGCTTTACGAAATCCTCCAGCAAGAAACTCTCAAGCAAGAAATCACCAGCATCAAGAACTTCAAGATTTGCCTCCAAGAAACCAGGCTGCCAACCTCCCTGTCCAAATACATAACAACCAGCTCTATGGCAACCATTTTCCTGGTTTTATGGTGGATGATTAA

Coding sequence (CDS)

ATGCTTGAACTTTTTTCAATTGGATCTTCGCAACACCACAATGGACGTGGAAGCCGCCAAAGCCAACGCTTGCAGTTGGTGGAAGCATCTGTGGAAGAAATTTGGAAGGGGTTCTCAGAGATGCAGCAATCTTTGACACAAATAACCGACCTTCTAACTCGATTTAACATCATACCGATTGGAGAAAATCCACGAAGAAATGAAGCTTTACGAAATCCTCCAGCAAGAAACTCTCAAGCAAGAAATCACCAGCATCAAGAACTTCAAGATTTGCCTCCAAGAAACCAGGCTGCCAACCTCCCTGTCCAAATACATAACAACCAGCTCTATGGCAACCATTTTCCTGGTTTTATGGTGGATGATTAA

Protein sequence

MLELFSIGSSQHHNGRGSRQSQRLQLVEASVEEIWKGFSEMQQSLTQITDLLTRFNIIPIGENPRRNEALRNPPARNSQARNHQHQELQDLPPRNQAANLPVQIHNNQLYGNHFPGFMVDD
Homology
[Close]
BLAST of CcUC03G053140 vs. NCBI nr
Match: KAA0045133.1 (hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK23604.1 hypothetical protein E5676_scaffold500G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-05
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 41  MQQSLTQITDLLTRFNIIPIGENPRRNEALRNPPARNSQARNHQHQELQDLPPRNQAANL 100
           MQQS+  +T+L TR ++ P+G      EA++  P RN  A N +H       PR+QA   
Sbjct: 1   MQQSIVDLTNLFTRIHVQPLG------EAIQ--PPRNQAAANQEH-------PRDQA--- 60

Query: 101 PVQIHNNQLYGNHFPGFMVDD 122
            V IHNNQLYGN+  G+++DD
Sbjct: 61  -VHIHNNQLYGNNLSGYLLDD 62

[Close]
BLAST of CcUC03G053140 vs. ExPASy TrEMBL
Match: A0A5D3DIZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001160 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 41  MQQSLTQITDLLTRFNIIPIGENPRRNEALRNPPARNSQARNHQHQELQDLPPRNQAANL 100
           MQQS+  +T+L TR ++ P+G      EA++  P RN  A N +H       PR+QA   
Sbjct: 1   MQQSIVDLTNLFTRIHVQPLG------EAIQ--PPRNQAAANQEH-------PRDQA--- 60

Query: 101 PVQIHNNQLYGNHFPGFMVDD 122
            V IHNNQLYGN+  G+++DD
Sbjct: 61  -VHIHNNQLYGNNLSGYLLDD 62

The following BLAST results are available for this feature:
BLAST of CcUC03G053140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045133.15.9e-0543.21hypothetical protein E6C27_scaffold30G001320 [Cucumis melo var. makuwa] >TYK2360... [more]
BLAST of CcUC03G053140 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC03G053140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DIZ02.8e-0543.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CcUC03G053140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G053140.1CcUC03G053140.1mRNA