CcUC03G052610 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G052610
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Defensin-like protein
Location	CicolChr03: 18421886 .. 18422375 (-)
RNA-Seq Expression	CcUC03G052610
Synteny	CcUC03G052610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCATCTCCTTCTCTGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGTACCCCTATTTAATTTTATTCTTTGTTTGAATTTCCTCATCCCGTTAATAATTTGTTCTTTTTTTTTTTTTTTTTTTCTTTTATTATTTTTTTTTTTTTTTTGTTTTTTAATTGATTTTATGGTAACATATACCCGATTTATATAATTGCTGACCTAAAAGAAAACAGTAAGTTTCAATGCTTAACAAACTTTCTGATTTATTTACTTACATATTAGATATTGAGTTTGGTGCATGGCTTTTGTGAAAGCAGGAGAAATGATGAAGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAATGATGTTGAGTGTATGAGTGGTTGCAAAGCCCAATTTGGAGCAACGGCCATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

mRNA sequence

ATGAAGTCCATCTCCTTCTCTGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAATGATGAAGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAATGATGTTGAGTGTATGAGTGGTTGCAAAGCCCAATTTGGAGCAACGGCCATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCCATCTCCTTCTCTGCCATTGTTCTTGTGGTTTTACTCATCTTCAATGGAGAAATGATGAAGAGAAGTGTTGAAGGTGAAGGGTTATGTGAGAAGGCATTGCACGGTGGAGGGTGCAATGATGTTGAGTGTATGAGTGGTTGCAAAGCCCAATTTGGAGCAACGGCCATAGGATTGTGCTTTTTCTTTCGAACGCCAAGTGATACTTGTCTCTGTCGCTATCCTTGTTGA

Protein sequence

MKSISFSAIVLVVLLIFNGEMMKRSVEGEGLCEKALHGGGCNDVECMSGCKAQFGATAIGLCFFFRTPSDTCLCRYPC

Homology

[Close]

BLAST of CcUC03G052610 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_006301 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGE-MMKRSVEGEGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GE +M RSVEGEGLCEKALHGGGC D EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. NCBI nr
Match: KAA0040274.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.4 bits (337), Expect = 4.2e-28
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGE M +SVEG  GLC+KALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. NCBI nr
Match: KAA0061621.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 7.1e-28
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GE M +SVEG  GLCEKALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. NCBI nr
Match: KAA0062521.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 9.3e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GE M +SVEG  GLCEKALHGGGC DVEC+SGCKA FG  A+
Sbjct: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. NCBI nr
Match: KAA0062516.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 9.3e-28
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGE M +SVEG  GLCEKALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL
Match: A0A0A0LH75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGE-MMKRSVEGEGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LL+F+GE +M RSVEGEGLCEKALHGGGC D EC SGCK  FGA A+
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL
Match: A0A5A7T9W7 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00030 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIFNGE M +SVEG  GLC+KALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFNGETMMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL
Match: A0A5A7V7B1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00090 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-28
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GE M +SVEG  GLCEKALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL
Match: A0A5A7VA38 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00120 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MKS+SFSAI+L +LLIF+GE M +SVEG  GLCEKALHGGGC DVEC+SGCKA FG  A+
Sbjct: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL
Match: A0A5A7V7X3 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00070 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MKSISFSAIVLVVLLIFNGEMMKRSVEG-EGLCEKALHGGGCNDVECMSGCKAQFGATAI 60
          MK +SFSAI+L +LLIFNGE M +SVEG  GLCEKALHGGGC D ECMSGCKA FG  A+
Sbjct: 1  MKFVSFSAILLALLLIFNGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:

BLAST of CcUC03G052610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61300.1	2.4e-28	79.75	hypothetical protein Csa_006301 [Cucumis sativus]	[more]
KAA0040274.1	4.2e-28	79.75	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0061621.1	7.1e-28	79.75	Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like prote...	[more]
KAA0062521.1	9.3e-28	79.75	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0062516.1	9.3e-28	79.75	Defensin-like protein [Cucumis melo var. makuwa]	[more]

BLAST of CcUC03G052610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC03G052610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH75	1.2e-28	79.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1	[more]
A0A5A7T9W7	2.0e-28	79.75	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]
A0A5A7V7B1	3.4e-28	79.75	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VA38	4.5e-28	79.75	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71...	[more]
A0A5A7V7X3	4.5e-28	79.75	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71...	[more]

BLAST of CcUC03G052610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 28..78 e-value: 1.3E-7 score: 32.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G052610.1	CcUC03G052610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism