CcUC03G052360 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G052360
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein TIC 20
Location	CicolChr03: 17427650 .. 17430120 (+)
RNA-Seq Expression	CcUC03G052360
Synteny	CcUC03G052360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAGTCCATCACACGTAAACAAAAATAAAATTTTGTTATATATGTGTTTGATAATTTTCCTTTTGACTATTTTTTCAGCTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCCTCATCGCCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTTCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATTGAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTATGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCACTCCTTCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGGTTTGTTCTTCAACCTTTCTTCTACTTTGGGAATCTTTGGATCCAGGAGTTTGTAATTTAGGGTTTTGATTTTCCTCTGAAATTAGTGAAATTCTGAGTTTTGGGAGAAATCTGAATCTAATCAATGGAGGTTGGTCGTTACACCTTTAGAAGAGATGTATGAGAGAGGAATTGGAATGTGTATGTTGATTGTGCATTTTTTGGTTATAAGCGTTCTTTGCAGCTACACTGAATAAGTTTATGAAGCATTTGTGCAAGGGAAACTGTAGATAATGAGACGATTTAAATACTATTTGGTCCACCCTTTCTTATCAAGCTTTGATTTTGGTTACATACTTTCAAATTTTGTTCATTTTGTCATTTTTTTTTCAACACTTTGTTAACTAAATTAATTAAAATATAACTTTTAAATTTGCATCAAAGGTTTTCTATTGGATTTTAAAATTTTTCAATAAGTATAGAGATCAAAAGACATTATGAGAATGTAGCAATGTACACAAGAATCAAATAAGCAAATGTTGAAAGTGTAGGGATACAAAATAAATCAAAGTCGCAAGTTCGTAGACTAAATCATGTTTTGTTTAGGCATAAGATTTACTATTGCAAATATATGTGAGGCAATCTTAAGGGATATTTGTATGGATAACTTTAATATGGAGGCCCAAATGAAATTTGGTCAATGATTCAAATTCACACGAAAATTGGCCTAATGCTTATGTCAGCCGTGTGTGAAATTACCAATTTATTCCTAAAACGCGCGCGAGGGCTGCAGGCAACCACATATTTTTGTTTCTTCCTCTTGCTCGTTTTCAAAACTTTACGCGTGTTTTGCTTTCTGCTGCTAATTAATGTTCCTGTAGGAATTTGCTTGAAAATGCAAAAAACTTCGGTTCTTTCAAATCAAACTAAGTAGTAGTGTTTCTTAAGCTAAGTATATGCTATTTTAAATAAAGAACAAAATGTGGAAGACAAGAAACCCGTTAGACTGGACTCGTTGGCTATGGACAACTCATCTTCTAACGTTTTAGAGGCTATTGAATCATCATATACATTCCATTACACATGGAAGTAAGTGAATGTAAACCTTTTCGTCGTTTATTGTTTACCACGTAAGGAGAGACAAGAAAATGATAGCCAAAGTGATAGAAAATATAGGTAAGAGGAATAAACGAGAAGAAGAAAGTTGAGCGAGAAAAAAGCACGAGAGGAAGAAAGTGGAGCGAGAGAAACATGAGTAATCGTGTAAACGAGAGAAGAAAGAAAGCGGGAGACAGAAACGAGAGGAAGAAACGAGAGCGAGAGTTTTATAGAATCGAAATTTATAATTTTTTTTCTCATTCTCCAATTTTTACATACAGAGTAACAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTAGGGGACAACAAAGAAGAATGCTACAAGGGAGGTCATACGAAGAGCATCATGGTGCCAAACACATTGAATTATAGTCAACCGAGTGCTACAAACTTTCAAATGTCAGTTCTTCAGAGTTCAACATCATAATGAGAATGAAATACAAGTTAGATTGTGAACGTCCTCCAGTTTGCATCGACATTAGATTTCTACTCTAAAAAATGGATCGTAACAGACCTCTAATATTTGTCAATTTAAGATCAAAATCAAGAGCAAACATTTGGAG

mRNA sequence

ATGTCCCACTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCCTCATCGCCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTTCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATTGAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTATGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCACTCCTTCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCATCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGAGTAACAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTAGGGGACAACAAAGAAGAATGCTACAAGGGAGGTCATACGAAGAGCATCATGGTGCCAAACACATTGAATTATAGTCAACCGAGTGCTACAAACTTTCAAATGTCAGTTCTTCAGAGTTCAACATCATAATGAGAATGAAATACAAGTTAGATTGTGAACGTCCTCCAGTTTGCATCGACATTAGATTTCTACTCTAAAAAATGGATCGTAACAGACCTCTAATATTTGTCAATTTAAGATCAAAATCAAGAGCAAACATTTGGAG

Coding sequence (CDS)

ATGTCCCACTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCCTCATCGCCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTTCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATTGAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTATGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCACTCCTTCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCATCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGAGTAACAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTAGGGGACAACAAAGAAGAATGCTACAAGGGAGGTCATACGAAGAGCATCATGGTGCCAAACACATTGAATTATAG

Protein sequence

MSHLNFTISPRKRASFHPHRPHSRRLCHKEMASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWFLAFWVEPLTCPLLPMLLAGRFSFRVTKYGREVAFHSVWWCRGQQRRMLQGRSYEEHHGAKHIEL

Homology

[Close]

BLAST of CcUC03G052360 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida])

HSP 1 Score: 316.6 bits (810), Expect = 2.1e-82
Identity = 170/207 (82.13%), Postives = 181/207 (87.44%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MASS IPLLNLS K+A +AALIPHSSAI+SRHRSSLPFLPSKPAKS V RMSYNPTPATD
Sbjct: 1   MASSSIPLLNLSVKTAFRAALIPHSSAIKSRHRSSLPFLPSKPAKSTVFRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           R+ISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPHASFVAFFALYLG
Sbjct: 61  RVISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHASFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           +VRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR GLGF+IMVWGHNGLFVF   
Sbjct: 121 LVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGLGFQIMVWGHNGLFVFS-V 180

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 181 LCFVYSLVSCLLGRTPHLPIVADAAGR 206

[Close]

BLAST of CcUC03G052360 vs. NCBI nr
Match: XP_004139099.1 (protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_006938 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-79
Identity = 165/207 (79.71%), Postives = 178/207 (85.99%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS+ IPLLNLSAK++I+AAL PHSSAI+SRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVF   
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFS-V 180

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 181 LCFLYSVVSCLLGRTPHLPIVADAAGR 206

[Close]

BLAST of CcUC03G052360 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >KAA0038239.1 protein TIC 20-II [Cucumis melo var. makuwa] >TYK30638.1 protein TIC 20-II [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 3.1e-78
Identity = 166/210 (79.05%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSA---VIRMSYNPTP 90
           MAS+ IPLLNLSAK+AI+AAL PHSS I+SRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 210
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 211 IWFLAFWVEPLTC-----PLLPML--LAGR 231
              L F    ++C     P LP++   AGR
Sbjct: 181 S-VLCFLYSMVSCLLGRTPHLPIVADAAGR 209

[Close]

BLAST of CcUC03G052360 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-77
Identity = 164/207 (79.23%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS  IPLLNLS K AIKAALIPH SAI+SRH  SLP LPS+PAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM W HNGLFVF   
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFS-V 182

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 183 LCFLYSVVSCILGRTPHLPIVADAAGR 208

[Close]

BLAST of CcUC03G052360 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >KAG6590106.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 2.6e-77
Identity = 164/207 (79.23%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS  IPLLNLS K AIKAALIPH SAI+SRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM W HNGLFVF   
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS-V 182

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 183 LCFLYSVVSCILGRTPHLPIVADAAGR 208

[Close]

BLAST of CcUC03G052360 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-48
Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 71  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 130
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 131 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 190
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 191 SGLGFKIMVWGHNGLFVF 208
            G G K M+WGH G+FVF
Sbjct: 160 GGFGMKAMMWGHTGVFVF 177

[Close]

BLAST of CcUC03G052360 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 88  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 147
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 148 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 207
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 208 I 209
           +
Sbjct: 179 L 178

[Close]

BLAST of CcUC03G052360 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-16
Identity = 40/99 (40.40%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 90  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 149
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 150 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP 188
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQP 109

[Close]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.0e-79
Identity = 165/207 (79.71%), Postives = 178/207 (85.99%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS+ IPLLNLSAK++I+AAL PHSSAI+SRH SSLPFLPSK  K   IRMSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIMVW HNGLFVF   
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLFVFS-V 180

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 181 LCFLYSVVSCLLGRTPHLPIVADAAGR 206

[Close]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.5e-78
Identity = 166/210 (79.05%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSA---VIRMSYNPTP 90
           MAS+ IPLLNLSAK+AI+AAL PHSS I+SRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 210
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 211 IWFLAFWVEPLTC-----PLLPML--LAGR 231
              L F    ++C     P LP++   AGR
Sbjct: 181 S-VLCFLYSMVSCLLGRTPHLPIVADAAGR 209

[Close]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.5e-78
Identity = 166/210 (79.05%), Postives = 178/210 (84.76%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSA---VIRMSYNPTP 90
           MAS+ IPLLNLSAK+AI+AAL PHSS I+SRH  SLPFLPSK AKSA    IRMSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 210
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIMVW HNGLFVF
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVF 180

Query: 211 IWFLAFWVEPLTC-----PLLPML--LAGR 231
              L F    ++C     P LP++   AGR
Sbjct: 181 S-VLCFLYSMVSCLLGRTPHLPIVADAAGR 209

[Close]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.5e-78
Identity = 164/207 (79.23%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS  IPLLNLS K AIKAALIPH SAI+SRH  SLP LPS+PAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM W HNGLFVF   
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIMAWSHNGLFVFS-V 182

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 183 LCFLYSVVSCILGRTPHLPIVADAAGR 208

[Close]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 1.3e-77
Identity = 164/207 (79.23%), Postives = 174/207 (84.06%), Query Frame = 0


Query: 31  MASSFIPLLNLSAKSAIKAALIPHSSAIESRHRSSLPFLPSKPAKSAVIRMSYNPTPATD 90
           MAS  IPLLNLS K AIKAALIPH SAI+SRH  SLP LPSKPAKS  IRMSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVFIWF 210
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM W HNGLFVF   
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIMAWSHNGLFVFS-V 182

Query: 211 LAFWVEPLTC-----PLLPML--LAGR 231
           L F    ++C     P LP++   AGR
Sbjct: 183 LCFLYSVVSCILGRTPHLPIVADAAGR 208

[Close]

BLAST of CcUC03G052360 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-49
Identity = 97/138 (70.29%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 71  SKPAKSAVIRMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 130
           S+ A +   R SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 131 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 190
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 191 SGLGFKIMVWGHNGLFVF 208
            G G K M+WGH G+FVF
Sbjct: 160 GGFGMKAMMWGHTGVFVF 177

[Close]

BLAST of CcUC03G052360 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-25
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 88  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 147
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 148 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMVWGHNGLFVF 207
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++   + +F+F
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSLDSTVFLF 178

Query: 208 I 209
           +
Sbjct: 179 L 178

The following BLAST results are available for this feature:

BLAST of CcUC03G052360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879337.1	2.1e-82	82.13	protein TIC 20-II, chloroplastic [Benincasa hispida]	[more]
XP_004139099.1	2.1e-79	79.71	protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 2...	[more]
XP_008443678.1	3.1e-78	79.05	PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI...	[more]
XP_022987499.1	1.5e-77	79.23	protein TIC 20-II, chloroplastic-like [Cucurbita maxima]	[more]
XP_022960653.1	2.6e-77	79.23	protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote...	[more]

BLAST of CcUC03G052360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82251	1.6e-48	70.29	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
Q9FM67	1.6e-24	46.28	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
P73387	3.5e-16	40.40	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of CcUC03G052360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS7	1.0e-79	79.71	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1	[more]
A0A1S3B9C6	1.5e-78	79.05	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1	[more]
A0A5D3E499	1.5e-78	79.05	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006...	[more]
A0A6J1JJ22	7.5e-78	79.23	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1	[more]
A0A6J1HBN6	1.3e-77	79.23	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1	[more]

BLAST of CcUC03G052360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47840.1	1.1e-49	70.29	Uncharacterised conserved protein ycf60	[more]
AT5G55710.1	1.1e-25	46.28	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 91..223 e-value: 1.1E-33 score: 116.6
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 42..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33510:SF5	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 42..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G052360.1	CcUC03G052360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane