CcUC03G050440 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G050440
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30-kDa cleavage and polyadenylation specificity factor 30
LocationCicolChr03: 8913845 .. 8921768 (+)
RNA-Seq ExpressionCcUC03G050440
SyntenyCcUC03G050440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCATTTTTCCAACCCATAGCTACAACTGCAACAGCAACTCCGTTGAAGTTCACTTACTCCCTCCGGTCTCCGCTTCTTGGTTCTTAGCTATGATCTGCTGCTGCTGCTGCAAAACCCTAATTCCCTAACCCATTTCCCTTTCCCTTTCCTAATGGAGGATCCGGAGGGCGTTCTCAGCTTCGATTTTGAGGGCGGTCTCGATGCCGCTCCCACGAACCCCGCCGCCGCCGCCGCCTCCTTGCCCCTCATCCACTCCGACTCTTCTGCCCTGCCCGCCCTCTCCAATTCCGTTCCCCCCGCCCTCGGTACTGCTGCTACAGCTGAAGCTCCTGGTGCCCCAACCGGCAATGTCGGCAGCCGGAGGAGCTTCCGGCAAACAGTTTGCCGCCATTGGCTCCGCAGCCTTTGTATGAAGGGCGATGCCTGTGGCTTCCTTCACCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTTCGTCTCTATGGCGAGTGCCGCGAGCAAGATTGCGTGTACAAACATACCAATGAAGATATCAAGGAGTGTAATATGTACGTTTTGGAATCTGGACTTCAATTTGTGTCTTTAATTTCTGAGCTGTTCGTCAGATTTAAATATTTGGTTGCTTAATTTACTTGTACTCTTCTTTTAATAGGAGGTGATCAATGCCTGCTCTCTTCGTTTATGCCTTTCTTCTTTATCCCTAGTTGTTGGATTTATTTGTATCATATGGAGTTTATAGATTGCAGGCTGGGAAATTTCGTTTTTTTTTTTTCGTTCGTTTTTAAATAAGAGAAAACAACTAATTAATATATGAAAATTCACAAACAAAATCTACTTTCTCCCATTAGGAGTATACAAAAGAGCATCAAAATTGCAAAGGAAGATCCGTTACATTAGTCGTTAGACAAATAGCACCATGAAGAGAAACTTATCCAAATCATAAGCCTCCTTCCGATCTCTTTCCTTTCTTTGTTATTCTATAATACCTTTTTAACCATAAAAGACCATGAGATGGCGTTAGCTGCATTAATTCAAAGACTTCTAAGCCTTTTCTTTGAAGTTTTTCCCAACCAACAAATGCATGATTATATCTTTAGTGGAACCATCATGGACGCCTGAAATTGTTTCTTATCCAAAGAAAAAAGGACCTAGGAGTGATAAAAATAATGAAATAGAGTATCCCTACATCTCTGCTATACGAGCAAAGTAGTAGTAGGTAGTGTTGGGACTTGTTTGAATGTATACTTCTTCCCTTGGTTTTCCCCTCCATCAATGAAATTAATGATTCTCCAAAGATATTTTCAAGTTTTAAGTTTAAGTATGTGTATGGCTTCAATACGAAGATACCTATTATATGTAACGTTGATGTTATCGCTAGATACTTTTAAGGTGCTAGATCATGAGGAATCCTCATTCAAGTTTTTACAAAATGATTCCCTGTTTTTACTTGGACAAAAATTATTGTAATAACATAATCTTGTAAATTAATTTCTGCAGTACATCTTTTTGGGCCAATTTTTGTTCTTTTGAAAACAATTGATGTTACTCATCTGAAGGCTAAACACTGTAACTGCAGGTACAAGTTCGGTTTCTGTCCAAATGGTCCTGATTGTCGATATAGGCATGCAAAGTTGCCTGGACCTCCACCTTCAGTGGAAGAAATCCTTCAGAAAATACAGCACTTGGGTGCATACAATTATGGTTCCTCAAACAAATTCTTTTCACAACGTGGAGTCAGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCTCCGTTACTCAAGGAGCAATAGGAAAGCCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAGTCTGCACAACAAACCAGCCAGACTCAGATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAAAACTGCAACGTCTTTGCCTCAAGGAATATCTAGGTGTGTCTGAAGAGACCTGAAGTATTTTTTCATGTTACTTTAACTTAGCTCTTGTATCATATACAAACGTCATTGCAGAGATATGTTATTTAACCTTCCGTGTTCAAATCATATTTGTGCTTTCGTTTGGTTACTCTAAGCCCCATTAGTCAATAATGTTTTTCTTCATATCAATTTGTAGTCTTTGAACTACAAGAATCTGTAGTAAAAATGGGATTCCAACTCAGTACCTTTTGGGATTTTGAGAAGAGTTGCTCCTTTAAGGAGCACAATACGAGCTGCCCCTTGCGCTTGATGAATGGTATCATCTTTCTGTTTCTTTTTCTTTTACTTTTTTTTTTCCCTCAAAAAAATGTCCTAAAACTTGCTTTCATTGAGAAGAAATGAAAGATTACAGAAGGGCATGAATGGTATCATCTTAAGATATTAGTATTTTACATGTTCTGTATCAAGCTATTAAATTCTATGCCGAAGCTTCATTACCTCATGTCCTAAGTGCATGAATGCTAATGCTCCATTTCAATTATTATCTCGCGTCAAGTGTCAAGTGTCAAGATTCTTTTTTTTCCCCACACATGTATGGTTCTGTTATTGATTGGCTAGAATCTGTTGGCTCATAACTCATACTCTGTTGTGATAGGGTTTCATTAAATATGTGGACTGAGACTTCTTACAGACCTTTTTAATTTAGTTTGCTTTAATACTTAAAGTTGAAGTAGTCTCTCCAGCTTCTGCAATTATACTCCGCTTGTCACTTATGCCAAGTGGAGCTGTTTTCTGTAAAACTCAATCAGCAAGGGGTTACCCCTCTTCGGTTCTATAACCTTTTCCATTATCTTCTGCTGAAGAAATGTGGTTACTTTTAATATATTTCTGCAAACAGAATAAAAAATATCTGACTTTCACATGAACCTTTTACATACTCTGAATGTCCTAATTTGTTTTTGAAAGATTAGGTACTTTATTGTTAAAAGCTGCAACCGTGAGAATTTGGAGTTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGTGCTAACCATTCTCTATTGTATTTGTGTGTGACACTACTTGGTCACGGAGGAACAAAGTATGTTTGTTTGAGATAATCATACTGGTTGACTATTGGCTGCTTAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAATTTTTCACTCAAATGGCTGAAGGTTGATATTTTATTTCTTAGATCTATAATTTTATGCAGAAATTTACATTACATATGTATCTCACCATGCGTTTGCATTTTAGTAAGTTACAATTATTAATGGTTGTGCGCACTCTCTCTCTCTGTCTCTCTAAAAAATCATGTTTACTCTCAAAAGTTCATCAATGTGGTGCTCATTAAAAATAGGACTGAATTTTACTCTTTTAATTTGTGATAATGAACATTTTTTTCTTTCCATCATTAAAAGATGTATGAGAACGAGGAATCAAAGGAACTTAGTTGTATCCTAGAAAGAGGAAGAAAACTTGATCAATTTCTCAATCTAAATCTTCCCTAGACAGAGTTTTTAAAACTTGATCAAGCTATTTTCAGTATTAATGGTCTATGTATTGTTCACTATAATTATTTGATATTACTATTTAGGATAAATAACAGCTTAGATTATATGCATTTTCTATGATCTCTCAAAGCTAGCTAAAATCTGAATTTGACAGATCCATGATAATGCTCATAGTTTAAGTTAAATTGTGTTGCGAAGGATGATTTCATTGCAGTCAATTTGAGTCCTGTATGATGCAATGAATAATTTGACTTTGTTACTTGCAGTTATGTGAACTATCCTTCCCGAAAATTTAAGTTAAATTATGTTGCAAAGGCTGATTCCATTGCAGTTGACTTGAGTCCTGTATGATGCAATGAATAATTTGACTTTGTTACTTGCAGTTATGTGAACTATCCTTCCAGAAAACGCGACATTTGAGGAATCCGTATAATGAAAACTTACCAGTAAAGGTACAGTATCTCAAGCTTGATGAAAGATTTCTATTTATATTTACATCTGCAGATGTTTTTTTCATGCTTCTTCATCTGCAGATTTCTATTTGTAGTAACTCTTGAAAAATATTTCCCACTTCTTTTATCTTTTATGTTTATGATTATTGATTATTATATTGTTATGCATTTTTTGGTGATATATTACCGGTTTTGTTGAAGTCAAATTATCTGAAAGCATACTTAAGAACTTGCAATCTTGTGGATGAAAGTTTATCCTTCTTCTCCTTTGTTTCCTCCTTGTGAGTGCTGGGGGGGAGTTATCTGGGAGCTTTCTGTAGGCTTTAGTTTCATGGAAGTTACTAGAAATTATACCCTGCTCCATGTAGACTGCGGTCTTTATTTTACTTCCAGGAATCATCTTGCAGAGAGTGCAGAGTGCTAACAGCCTAACATGGTTGATACATTCATGAGGGATTGAAATCCTTTTTGATCTCACTCTTCTACATGAGAGCATGATTTCTGTCAAGAATTTGAGAAAAGCACAAATAACATTTGACTATCAGAACCATCGCAAGTAATGCAGGCTTCATTTTCCTGCTAAACTAACCACCACATCGTGAAGTCTTTCATTGATAGCAATTAAAAACGTTGGCCCAAACATGACAGACTTTAAAATAAAGGCTTGGGTCCAACAAAAACATGAAAGACTTCCAATGAAGTCTCGAACATTTTAACAACTCCTTATTGGTATTGATGAAAGTTCTTGACAGAAATACCAAGTTTGTCTGTTAGCCCCTTCAAAGCTAACGAACTACATCTGAGTTAATGGGAAGTAGTGCACCAAGTTGTTTGCTAGAGTGGACGGCCATATCCTTTTAATAAAAAAAGAATAATAAAATTGAATTTTTTAGACTTGACAAATTTCAAGGGGGTAATTCTCCTATGGAGCTGCATCTTCATCTTAGTCTTTTTTTATTTTTTATTTTTTATTATTATTATCATTTTGGCAAGAAAAACCTTAGTGTGTCTTGATGCCATCCTACTCTCAGTGCAATATGTTTCTTGCTTGGCAGGAACAGGGGGAAAAGGCACATAAAATTACACCACCCGAGCAAAGTGAGATTAAGAAAAATTGTCAAATATTGTGATTAAAAAGTAGGAATACATGGTGAGGTAAATGAAATATAATTGGGCACAAATAATTTTGTAGAAAATTACTTTGATATCGGGTTTTTTTTCCAAGAAAATATAAATAAAAATAGGAAAATATTTTGTCAAAAATACTAGAGAGTCCAGAAGATATTTTTTCCCTCCAAGACGCATCAAAAAGGCTGCAGTAAAAAAGTGTAAAAAAGGTGATCAAGGGCAATCTCCTCAGTGGAGGTGCTCAGTGGAGGTGCTTCGTAGACTAACTGTATCTTGGCTTGCTGTTAGCCTGCCACTATAGGCAATCAATTGGGCTTATTTGAAGACACTGTTTAAATGCTTAGAATACTTTCGTCTAGAAACCCGGTGCAGGTTAAATCATTCGTTCATTTTGGGTACTGACTGAGAAATTTGTGGATTCACTTTGATATTTAGGAGGATTAGGAAATACGGCAAAAGGCCAAGATCTTTTATTGGATAGTGGCATTTGATAGTTTTATTGAGAGAAAACGAGATGATTTTCTGGAACATTGTTAATGCTGATTGTGTAATGTGTATCTCATGGGATGGCTTTTTGGTGCTTTGAAAGCAGCCATCCCGTTTTCCTTGTAAATCGTTCAATTGGCACCCTGTTTCTGCTTATTGTCTTAGTTTGTTTCCTGTCTACCATCCACATGTACGTGGAGGATGATTGTTTGAAGGAATGATATTTGGTCCGTCATATCTTGTTCTGCAATCATTGTTACCATTGGATACTAATTGAGCCATCATTTTTCTCGTACTTATGCAAGTGCAGATCAGTAGAGATTGCCAAGAGCTGGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTACTTTATCTCGAGCCAGATGGTGAATTGATGGTATGCTTGCTTTGTTACTTTTGGTCGAATCAGAAAACTTCGAAATACATTCCCATTACAAAATAAGGATCACATATGCAAGCAGGAGAGGAAGAAAATTAAATTTGGGGGAATGGATTTTGGCAGTTTTTGGATTTATTATTGTGTAATTGTGAGGGATAGCTCTAGCTGGATTTCTCAAGTGTGTTTTTCTTATTTTCGTGATCAGGCTGTCTCAATAGCAGCAGAATCGAAACGGGAAGAAGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAACAAGAACCCAGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGCGGTGCCCGACCCTTTCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTCGTGGTTTTGGTCCGTACGGTCCTAGGTTTTCCGGTGATTTTATGGGCCCCCCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTGCTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAACCCAGCTCGACCTGGTCGTCCTGTGTGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCATCTCAGAACATCAATCGAGCTGTTAAGAGGGACCAAAGGGGACCGACTAGTGATCGGAACGATAAATATATTGTTGGTCCGGACCAAAACAAGGGCCAGGAGATGCCAGGTAGTGGACATGATGACGGAATGCAATATAAGCAGGGATCAAAGGCTTATCCTGATGAGCAATATGGAGTGGGAACCACCTTTAGAAATGAAGAAAGCGAAAGTGAGGACGAGGCACCTCGGCGATCAAGGCATGGAGAAGGGAAGAAGAAGCGGAGAGGCCCAGAAGGAGATTCGACTGCAATCTCTGATCAGTGATTAGTTATAGTTAGTTATATCTAACCAAATAGCCTCCGTTTTGCCACTGACTAGTGATACCTTCCTTCTTAGACAAGACATCGTTGAACTTGTTGTAAGTTCTAAAATTGAGGTACTTTAGCTTCATCATTTTTTTTCTTCTCTCTTCTCATTTTATACCGTAAAGTTATACATTTCTCAGTAGTCATAATTCATACATTGTTTTACAAATTTGTATAAGAACTTTTATTTGAAGGGAAGAATCTCATAAAGTCGATATTCGATGGCATGAAGTTGTTATCTCTTCCTCCCTTGCCCCTCCATTCTAATCCCCAACCTCACCCCAACTTTTTCCTCTTACAACAGAAAGGAAAGAAAAGGGGGAGTCTGCAGTTAATGGCAGCAATGGAAGTTTGTACAAAGCTTGACTGACTTACGATTTGTCTAATGCATCATCCAAATTCCAAATGTCTGTTATGCTTATGCCAAGTCATTGCAATGTCAATTGTTTACTTCTGATGTAATGTTTTAATAATATTCTTATATTTTCTAAGCTTCTTCAATAGCACCTCATATGGCTGGGTTACGTTGAATAGCTTCAATCTGATGGAGCTGTCTAAGAAATTTCTTAGGGTTTCAGTGAAACCAAACCATTGATATGGAAAATGGAAAAATGACTTCAAGGATTAGGTTTTGGAACAAGGCCTCCAACCAAGATTATTATTTAGG

mRNA sequence

GGCATTTTTCCAACCCATAGCTACAACTGCAACAGCAACTCCGTTGAAGTTCACTTACTCCCTCCGGTCTCCGCTTCTTGGTTCTTAGCTATGATCTGCTGCTGCTGCTGCAAAACCCTAATTCCCTAACCCATTTCCCTTTCCCTTTCCTAATGGAGGATCCGGAGGGCGTTCTCAGCTTCGATTTTGAGGGCGGTCTCGATGCCGCTCCCACGAACCCCGCCGCCGCCGCCGCCTCCTTGCCCCTCATCCACTCCGACTCTTCTGCCCTGCCCGCCCTCTCCAATTCCGTTCCCCCCGCCCTCGGTACTGCTGCTACAGCTGAAGCTCCTGGTGCCCCAACCGGCAATGTCGGCAGCCGGAGGAGCTTCCGGCAAACAGTTTGCCGCCATTGGCTCCGCAGCCTTTGTATGAAGGGCGATGCCTGTGGCTTCCTTCACCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTTCGTCTCTATGGCGAGTGCCGCGAGCAAGATTGCGTGTACAAACATACCAATGAAGATATCAAGGAGTGTAATATGTACAAGTTCGGTTTCTGTCCAAATGGTCCTGATTGTCGATATAGGCATGCAAAGTTGCCTGGACCTCCACCTTCAGTGGAAGAAATCCTTCAGAAAATACAGCACTTGGGTGCATACAATTATGGTTCCTCAAACAAATTCTTTTCACAACGTGGAGTCAGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCTCCGTTACTCAAGGAGCAATAGGAAAGCCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAGTCTGCACAACAAACCAGCCAGACTCAGATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAAAACTGCAACGTCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGCTGCAACCGTGAGAATTTGGAGTTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAATTTTTCACTCAAATGGCTGAAGTTATGTGAACTATCCTTCCAGAAAACGCGACATTTGAGGAATCCGTATAATGAAAACTTACCAGTAAAGATCAGTAGAGATTGCCAAGAGCTGGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTACTTTATCTCGAGCCAGATGGTGAATTGATGGCTGTCTCAATAGCAGCAGAATCGAAACGGGAAGAAGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAACAAGAACCCAGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGCGGTGCCCGACCCTTTCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTCGTGGTTTTGGTCCGTACGGTCCTAGGTTTTCCGGTGATTTTATGGGCCCCCCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTGCTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAACCCAGCTCGACCTGGTCGTCCTGTGTGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCATCTCAGAACATCAATCGAGCTGTTAAGAGGGACCAAAGGGGACCGACTAGTGATCGGAACGATAAATATATTGTTGGTCCGGACCAAAACAAGGGCCAGGAGATGCCAGGTAGTGGACATGATGACGGAATGCAATATAAGCAGGGATCAAAGGCTTATCCTGATGAGCAATATGGAGTGGGAACCACCTTTAGAAATGAAGAAAGCGAAAGTGAGGACGAGGCACCTCGGCGATCAAGGCATGGAGAAGGGAAGAAGAAGCGGAGAGGCCCAGAAGGAGATTCGACTGCAATCTCTGATCAGTGATTAGTTATAGTTAGTTATATCTAACCAAATAGCCTCCGTTTTGCCACTGACTAGTGATACCTTCCTTCTTAGACAAGACATCGTTGAACTTGTTGTAAGTTCTAAAATTGAGAAAGGAAAGAAAAGGGGGAGTCTGCAGTTAATGGCAGCAATGGAAGTTTGTACAAAGCTTGACTGACTTACGATTTGTCTAATGCATCATCCAAATTCCAAATGTCTGTTATGCTTATGCCAAGTCATTGCAATGTCAATTGTTTACTTCTGATGTAATGTTTTAATAATATTCTTATATTTTCTAAGCTTCTTCAATAGCACCTCATATGGCTGGGTTACGTTGAATAGCTTCAATCTGATGGAGCTGTCTAAGAAATTTCTTAGGGTTTCAGTGAAACCAAACCATTGATATGGAAAATGGAAAAATGACTTCAAGGATTAGGTTTTGGAACAAGGCCTCCAACCAAGATTATTATTTAGG

Coding sequence (CDS)

ATGGAGGATCCGGAGGGCGTTCTCAGCTTCGATTTTGAGGGCGGTCTCGATGCCGCTCCCACGAACCCCGCCGCCGCCGCCGCCTCCTTGCCCCTCATCCACTCCGACTCTTCTGCCCTGCCCGCCCTCTCCAATTCCGTTCCCCCCGCCCTCGGTACTGCTGCTACAGCTGAAGCTCCTGGTGCCCCAACCGGCAATGTCGGCAGCCGGAGGAGCTTCCGGCAAACAGTTTGCCGCCATTGGCTCCGCAGCCTTTGTATGAAGGGCGATGCCTGTGGCTTCCTTCACCAGTATGATAAGTCTCGGATGCCCATTTGCCGGTTCTTTCGTCTCTATGGCGAGTGCCGCGAGCAAGATTGCGTGTACAAACATACCAATGAAGATATCAAGGAGTGTAATATGTACAAGTTCGGTTTCTGTCCAAATGGTCCTGATTGTCGATATAGGCATGCAAAGTTGCCTGGACCTCCACCTTCAGTGGAAGAAATCCTTCAGAAAATACAGCACTTGGGTGCATACAATTATGGTTCCTCAAACAAATTCTTTTCACAACGTGGAGTCAGCTTATCCCAACAGAATGAAAAATCTCAGTTTCCTCAGGGTCCGGCCTCCGTTACTCAAGGAGCAATAGGAAAGCCTTCTGCAGCAGAATCTGCTAATGTCCAACAACAGCAAGTTCAACAGTCTGCACAACAAACCAGCCAGACTCAGATACAAAGTCTTTCTAATGGCCAGCCCAATCAATTAAACAAAACTGCAACGTCTTTGCCTCAAGGAATATCTAGGTACTTTATTGTTAAAAGCTGCAACCGTGAGAATTTGGAGTTATCTGTACAACAAGGGGTATGGGCAACTCAAAGAAGCAATGAAGCTAAACTTAATGAAGCTTTTGATTCTGCTGATAATGTTATTTTGATTTTCTCAGTCAATCGGACTCGGCATTTTCAGGGTTGTGCAAAGATGATGTCCAGGATTGGTGGATCTGTCAGTGGGGGCAATTGGAAATATGCACATGGAACTGCACATTATGGGCAAAATTTTTCACTCAAATGGCTGAAGTTATGTGAACTATCCTTCCAGAAAACGCGACATTTGAGGAATCCGTATAATGAAAACTTACCAGTAAAGATCAGTAGAGATTGCCAAGAGCTGGAGCCCTCTATTGGTGAGCAGCTGGCTTCTTTACTTTATCTCGAGCCAGATGGTGAATTGATGGCTGTCTCAATAGCAGCAGAATCGAAACGGGAAGAAGAGAAAGCAAAGGGAGTTAATCCTGATATTGGAAACAAGAACCCAGATATCGTCCCGTTTGAGGATAATGAAGAAGAGGAAGAGGAAGAAAGTGAAGAGGAGGAGGAGGAGAGCTTTGGCCAATCCGTTGGTCTACCAGCTCAGGGCAGAGGGAGGGGCAGGGGAATCATGTGGCCCCCACATATGCCAATGGGACGCGGTGCCCGACCCTTTCATGGAATGCAGGGTTTTCCACCTGGGATGATGGGTCCGGATGGGTTGTCTTATGGTCCTGTTACACCTGACGGATTTCCCATGCCTGACATTTTTGGTATGGCTCCTCGTGGTTTTGGTCCGTACGGTCCTAGGTTTTCCGGTGATTTTATGGGCCCCCCATCTGCTATGATGTTTCGCGGACGACCTTCTCAACCTGGGGCCATGTTCTCCCCTGCTGGGTTTGGGATGATGATGGGTCAAGGACGTGGTCCCTTTATGGGTGGGATGGGAGTTACTGGTACTAACCCAGCTCGACCTGGTCGTCCTGTGTGTGTGTCTCCATTGTATCCACCTCCTGCAGTACCCTCATCTCAGAACATCAATCGAGCTGTTAAGAGGGACCAAAGGGGACCGACTAGTGATCGGAACGATAAATATATTGTTGGTCCGGACCAAAACAAGGGCCAGGAGATGCCAGGTAGTGGACATGATGACGGAATGCAATATAAGCAGGGATCAAAGGCTTATCCTGATGAGCAATATGGAGTGGGAACCACCTTTAGAAATGAAGAAAGCGAAAGTGAGGACGAGGCACCTCGGCGATCAAGGCATGGAGAAGGGAAGAAGAAGCGGAGAGGCCCAGAAGGAGATTCGACTGCAATCTCTGATCAGTGA

Protein sequence

MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALPALSNSVPPALGTAATAEAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSSNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPLYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKAYPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ
Homology
[Close]
BLAST of CcUC03G050440 vs. NCBI nr
Match: XP_038894441.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 1329.3 bits (3439), Expect = 0.0e+00
Identity = 668/708 (94.35%), Postives = 683/708 (96.47%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAA--SLPLIHSDSSALPALSNSVPPALGTAATAE 60
           MED +GVLSFDFEGGLDAAPTNPAAAAA  SLPLIHSDSSA PALSNSVP  LG A T E
Sbjct: 1   MEDSDGVLSFDFEGGLDAAPTNPAAAAAASSLPLIHSDSSAPPALSNSVPGPLGPAPTPE 60

Query: 61  APGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120
           APGAPTGN GSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ
Sbjct: 61  APGAPTGNAGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQ 120

Query: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSS 180
           DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQH+G+YN+G S
Sbjct: 121 DCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHIGSYNHGPS 180

Query: 181 NKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQI 240
           NK F QRGV LSQQNEKSQFPQGPA VTQG IGKPS AESANVQQ QVQQS QQTSQTQI
Sbjct: 181 NKLFLQRGVGLSQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQPQVQQSTQQTSQTQI 240

Query: 241 QSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300
           QSLSNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD
Sbjct: 241 QSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFD 300

Query: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360
           SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS
Sbjct: 301 SADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELS 360

Query: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEE 420
           FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAE+KREEE
Sbjct: 361 FQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAEAKREEE 420

Query: 421 KAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPH 480
           KAKGVNPDIGN+NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPH
Sbjct: 421 KAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPH 480

Query: 481 MPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDF 540
           MPMGRGARPFHGMQGFPPGM+GPDGLSYGPVTP+GFPMPDIFGMAPRGFGPYGPRFSGDF
Sbjct: 481 MPMGRGARPFHGMQGFPPGMIGPDGLSYGPVTPEGFPMPDIFGMAPRGFGPYGPRFSGDF 540

Query: 541 MGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPLY 600
           MGPPSAMMFRGRPSQPGAMFSP+GFGMMMGQGRGPFMGGMGVTGTNPARPGRPV VSPLY
Sbjct: 541 MGPPSAMMFRGRPSQPGAMFSPSGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVGVSPLY 600

Query: 601 PPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKAY 660
           PPPAVPS QNINRAVKRDQRGPTSDRND+YIVG DQNKGQEMPGSG+DDGMQYKQGSK Y
Sbjct: 601 PPPAVPSPQNINRAVKRDQRGPTSDRNDRYIVGLDQNKGQEMPGSGYDDGMQYKQGSKGY 660

Query: 661 PDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
            DEQYG+GTTFRNEESESEDEAPRRSRHGEGK+KRRG EGD+TAISDQ
Sbjct: 661 SDEQYGMGTTFRNEESESEDEAPRRSRHGEGKEKRRGSEGDATAISDQ 708

[Close]
BLAST of CcUC03G050440 vs. NCBI nr
Match: XP_008445183.1 (PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo] >KAA0036926.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa] >TYK05548.1 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo var. makuwa])

HSP 1 Score: 1323.9 bits (3425), Expect = 0.0e+00
Identity = 666/710 (93.80%), Postives = 681/710 (95.92%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAA----SLPLIHSDSSALPALSNSVPPALGTAAT 60
           MED EGVLSFDFEGGLDAAPTNPAAAAA    SLPLI SDSSA P LSNS+P +LG    
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPPPLSNSLPGSLGPTLA 60

Query: 61  AEAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120
            E  GAPT NVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR
Sbjct: 61  PEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120

Query: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYG 180
           EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLG+YNYG
Sbjct: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYNYG 180

Query: 181 SSNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQT 240
           SSNKFFSQRGV L QQNEKSQFPQGPA VTQG IGKPS AESANVQQQQVQQ AQQTSQT
Sbjct: 181 SSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTSQT 240

Query: 241 QIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300
           QIQS+SNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
Sbjct: 241 QIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300

Query: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360
           FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE
Sbjct: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360

Query: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420
           LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE
Sbjct: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420

Query: 421 EEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480
           EEKAKGVNPDIGN+NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP
Sbjct: 421 EEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480

Query: 481 PHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540
           PHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG
Sbjct: 481 PHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540

Query: 541 DFMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSP 600
           DFMGPPSAMMFRGRPSQPGAMF+P GFGMMMGQGRGPFMGGMGVTGT+PARPGRPV VSP
Sbjct: 541 DFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSK 660
           LYPPPAVPS+QNINRA+KRDQRGPTSDRND+YIVGPDQNKGQEM  SGHD+GMQYKQGSK
Sbjct: 601 LYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSK 660

Query: 661 AYPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           AYPDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 AYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]
BLAST of CcUC03G050440 vs. NCBI nr
Match: XP_022140120.1 (30-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia])

HSP 1 Score: 1293.5 bits (3346), Expect = 0.0e+00
Identity = 650/709 (91.68%), Postives = 667/709 (94.08%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MEDPEGVLSFDFEGGLDA PTNP  AA SLPLI SD SA P   A+S+S P A+G A T 
Sbjct: 1   MEDPEGVLSFDFEGGLDAGPTNP--AATSLPLIQSDPSAPPAASAVSSSGPGAVGHAVTV 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           EA GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  EAGGAVTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHL +YNYG 
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYNYGP 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQ 240
           SNKFFSQRG  LS Q EK QFPQGPA+V QG +GKPS AESANVQQ Q QQSAQQTSQTQ
Sbjct: 181 SNKFFSQRGAGLSHQIEKPQFPQGPATVNQGVVGKPSTAESANVQQPQAQQSAQQTSQTQ 240

Query: 241 IQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           IQSLSNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREE 420

Query: 421 EKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480
           EKAKGVNPDIG++NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP
Sbjct: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540
           HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD
Sbjct: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540

Query: 541 FMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPL 600
           FMGPPSAMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGVTG NPARPGRPV VS L
Sbjct: 541 FMGPPSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQL 600

Query: 601 YPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKA 660
           YPPPAVP SQN+NR VKRDQRGP +DRND+YI GPDQ+KGQEMPGSGHDD MQYKQGSKA
Sbjct: 601 YPPPAVPPSQNMNRVVKRDQRGPGNDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKA 660

Query: 661 YPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           YPDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+T +SDQ
Sbjct: 661 YPDEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATVVSDQ 707

[Close]
BLAST of CcUC03G050440 vs. NCBI nr
Match: XP_038889902.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispida])

HSP 1 Score: 1281.5 bits (3315), Expect = 0.0e+00
Identity = 649/710 (91.41%), Postives = 671/710 (94.51%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MED EGVLSFDFEGGLDA PTNP AA +SLPL HSDSSA P   A+SNS+  ALG A +A
Sbjct: 1   MEDSEGVLSFDFEGGLDAGPTNP-AATSSLPLNHSDSSAPPAASAVSNSLSGALGPAVSA 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           E PGA TGNVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  EPPGASTGNVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG+YNYGS
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGSYNYGS 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAI-GKPSAAESANVQQQQVQQSAQQTSQT 240
           SNKFF+QRGV LSQQNEKSQFPQG   VTQG + GKPSAAESANV QQQ QQSAQQTSQT
Sbjct: 181 SNKFFTQRGVGLSQQNEKSQFPQGQPLVTQGVVTGKPSAAESANVPQQQGQQSAQQTSQT 240

Query: 241 QIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300
            IQSLSNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
Sbjct: 241 PIQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300

Query: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360
           FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE
Sbjct: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360

Query: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420
           LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESKRE
Sbjct: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKRE 420

Query: 421 EEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480
           EEKAKGVNPDIG++NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLP QGRGRGRGI+WP
Sbjct: 421 EEKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPPQGRGRGRGIVWP 480

Query: 481 PHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540
           PHMPMGRGARPF GMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG
Sbjct: 481 PHMPMGRGARPFPGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540

Query: 541 DFMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSP 600
           DFMGPP+AMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMG+ GTNP+RPGRPV VSP
Sbjct: 541 DFMGPPTAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGIAGTNPSRPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSK 660
           LYPPPAVPSSQN+NRA+KRDQRGP S+RND+YIVG DQNKG EMP SG DD MQYKQGSK
Sbjct: 601 LYPPPAVPSSQNMNRAIKRDQRGPASERNDRYIVGLDQNKGLEMPSSGRDDEMQYKQGSK 660

Query: 661 AYPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           AY DEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+TAIS+Q
Sbjct: 661 AYSDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISNQ 709

[Close]
BLAST of CcUC03G050440 vs. NCBI nr
Match: XP_023541976.1 (30-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1258.0 bits (3254), Expect = 0.0e+00
Identity = 639/709 (90.13%), Postives = 659/709 (92.95%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MED EG LSFDFEGGLDA PTNP  AAASLPLIHSDSSA P   A+SNS   A G   TA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNP--AAASLPLIHSDSSAPPAASAVSNSGAGAGGPPVTA 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           +A GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  DASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG YNYG+
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGT 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQ 240
           SNKFFSQRGV LSQQNEKSQFP GPA+VTQG IGKPS AESANVQQQQ QQSAQQTSQ  
Sbjct: 181 SNKFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAP 240

Query: 241 IQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           IQ+ SNGQ NQLN+ +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVSIAAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREE 420

Query: 421 EKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480
           EKAKGVNPDI N+NPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+MWPP
Sbjct: 421 EKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540
           HMPMGRGARPFHGMQGFPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG RFSG+
Sbjct: 481 HMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGE 540

Query: 541 FMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPL 600
           FM P SAMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGVTGTNPAR GRPV   PL
Sbjct: 541 FMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPV-GPPL 600

Query: 601 YPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKA 660
           YPPPAVPSSQN+NRA+KRDQRGP SDRND+YI G DQN+GQE+PGSGHDD MQYKQGSKA
Sbjct: 601 YPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKA 660

Query: 661 YPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           YPDEQYG+GT  RNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 YPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match: A9LNK9 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana OX=3702 GN=CPSF30 PE=1 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 1.2e-220
Identity = 439/700 (62.71%), Postives = 491/700 (70.14%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALPALSNSVPPALGTAATAEAP 60
           MED +G LSFDFEGGLD+ P    A+    P  +S S+           A+  A T +  
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQNTASVPVAPPENSSSA-----------AVNVAPTYDHS 60

Query: 61  GAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDC 120
            A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQDC
Sbjct: 61  SATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDC 120

Query: 121 VYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSSNK 180
           VYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L  YNYG +N+
Sbjct: 121 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TNR 180

Query: 181 FFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQIQS 240
            +  R V+   Q+     PQG   +     G+P   ES N+QQQQ QQ  QQ+     Q+
Sbjct: 181 LYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQT 240

Query: 241 LSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSA 300
           L     +Q N+T+  LPQG++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFDS 
Sbjct: 241 LIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSV 300

Query: 301 DNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQ 360
           +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGTA YG+NFS+KWLKLCELSF 
Sbjct: 301 ENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFH 360

Query: 361 KTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKA 420
           KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD ELMA+SIAAE+KREEEKA
Sbjct: 361 KTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEKA 420

Query: 421 KGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMP 480
           KGVNP+   +NPDIVPFEDNEEEEEEE E EEEE   +S+    QGRGRGRGIMWPP MP
Sbjct: 421 KGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQMP 480

Query: 481 MGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFM 540
           +GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYGPRF GDF 
Sbjct: 481 LGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDFR 540

Query: 541 GPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPLYP 600
           GP   MMF GRP Q    F   G+G MMG GRGP MGGMG    N  R GR     P+Y 
Sbjct: 541 GPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG----NAPRGGR-----PMYY 600

Query: 601 PPAV----PSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGS 660
           PPA     P   N     + D+RG + D              Q+   + HD         
Sbjct: 601 PPATSSARPGPSNRKTPERSDERGVSGD--------------QQNQDASHD--------- 631

Query: 661 KAYPDEQYGVGTTFRNEESES--EDEAPRRSRHGEGKKKR 694
                EQ+ VG + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 ----MEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match: Q0DA50 (Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0677700 PE=4 SV=1)

HSP 1 Score: 719.9 bits (1857), Expect = 2.8e-206
Identity = 410/705 (58.16%), Postives = 483/705 (68.51%), Query Frame = 0 

Query: 5   EGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALPALSNSVPPALGTAATAEAP--GA 64
           +G LSFDFEGGLD  P                    PA  +S P  +G       P  G 
Sbjct: 3   DGDLSFDFEGGLDQPPAGGGGG--------------PAPHSSDPGGVGGGGGGGGPGDGG 62

Query: 65  PTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVY 124
             G    R S+RQTVCRHWLR LCMKG+ACGFLHQ+DK+RMP+CRFFR +GECRE DC Y
Sbjct: 63  GHGRGRGRGSYRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAY 122

Query: 125 KHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSSNKFF 184
           KH+ +D+KECNMYK GFCPNGP+CRY+H KLPGPPP VEE+LQKI  + ++     NKF 
Sbjct: 123 KHSYDDVKECNMYKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSF-----NKFN 182

Query: 185 SQRGVSLSQQNEKSQFPQGPASVTQGAI-------GKPSAAESANV------QQQQVQQS 244
             R  + +QQ E+ Q PQG     Q +I        +P+  + A        QQQQ QQ 
Sbjct: 183 QHRHNNYNQQGERPQHPQGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQ 242

Query: 245 AQQTSQ-----TQIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWA 304
            QQ  Q      Q+QS+ NG  NQ  + AT LPQG SRYFIVKSCNRENLE+SVQQG+WA
Sbjct: 243 QQQQQQKPNTNDQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWA 302

Query: 305 TQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYG 364
           TQRSNEAKLNEAF+S +NVILIFS+NRTR+FQGCAKM SRIGG + GGNWK AHGTAHYG
Sbjct: 303 TQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYG 362

Query: 365 QNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGEL 424
           +NFS++WLKLCELSFQKT HLRNPYN+NLPVKISRDCQELEP IGEQLASLLYLEPD EL
Sbjct: 363 RNFSIQWLKLCELSFQKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSEL 422

Query: 425 MAVSIAAESKREEEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPA 484
            A+ IAAE+K+EEEKAKGV+ D    N DIV F+DNEEEEEEESEEEEE +     G  +
Sbjct: 423 TAILIAAEAKKEEEKAKGVSADEAADNQDIVLFDDNEEEEEEESEEEEEGN-----GQES 482

Query: 485 QGRGRGRGIMWPPHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAP 544
           QGRGRGRG+MWPP MPM RG  P  G +GFPP M+G DG  +G     GF MPD FG+ P
Sbjct: 483 QGRGRGRGMMWPPQMPMLRGVGPMMGGRGFPPNMIG-DGFGFG----GGFGMPDPFGV-P 542

Query: 545 RGFGPYGPRFSGDFM--GPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTG 604
           RGF P+GPRF GDF   GP   M+F GRP QPG MF P G  MMMG GRGP MGG+G+ G
Sbjct: 543 RGFPPFGPRFPGDFARGGPMPGMVFPGRPPQPGGMF-PMGLEMMMGPGRGPLMGGLGMGG 602

Query: 605 TNPARPGRPVCVSPLYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPG 664
             P RP RPV ++P  PPP  P+    NR  KR+QR P  +R D+Y    DQ        
Sbjct: 603 --PGRPNRPVGMAPFMPPPPPPN----NRGTKREQRRPGGERGDRYETTSDQG------S 662

Query: 665 SGHD-DGMQYKQGSKAYPDEQYGVGTTFRNEESESEDE-APRRSR 686
            GHD  G    +G+++   ++YG  +  R+++SES++E APRRSR
Sbjct: 663 RGHDATGNSGAEGARSQSGDRYG-RSALRDDDSESDEEAAPRRSR 663

[Close]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match: B2RR83 (3'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-25
Identity = 79/202 (39.11%), Postives = 108/202 (53.47%), Query Frame = 0 

Query: 202  PASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQIQSLSNGQPNQLNKTATSLPQGIS 261
            P       I  P  +      Q  V+ +   +  +   S S     + +K+ +  P    
Sbjct: 1244 PQKYKDRGILHPKRSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPI 1303

Query: 262  RYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKM 321
            RYFI+KS N  NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363

Query: 322  MSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDC 381
             S IG   S  +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD 
Sbjct: 1364 SSEIGREKS-QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDG 1423

Query: 382  QELEPSIGEQLASLLYLEPDGE 404
            QELEP +GEQL  L    P GE
Sbjct: 1424 QELEPQVGEQLLQLWERLPLGE 1440

[Close]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match: Q5R746 (3'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 6.2e-25
Identity = 90/252 (35.71%), Postives = 122/252 (48.41%), Query Frame = 0 

Query: 154  PGPPPSVEEILQKIQHLGAYNYGSSNKFFSQRGVSLSQQNEKSQFP--QGPASVTQGAIG 213
            P P  S E  L            S++  FS    +  +   KS  P    P       I 
Sbjct: 1179 PRPMSSEELPLASSWRSNNSRKSSADTEFSDECTTAERVLMKSPSPALHPPQKYKDRGIL 1238

Query: 214  KPSAAESANVQQQQVQQSAQQTSQTQIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNR 273
             P         Q  V+ +   +  +   S S     + +K+ +  P    RYFI+KS N 
Sbjct: 1239 HPKRGTEDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNL 1298

Query: 274  ENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSG 333
             NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S 
Sbjct: 1299 RNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKS- 1358

Query: 334  GNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQ 393
             +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQ
Sbjct: 1359 QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQ 1418

Query: 394  LASLLYLEPDGE 404
            L  L    P GE
Sbjct: 1419 LLQLWERLPLGE 1425

[Close]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match: Q9H6S0 (3'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-24
Identity = 89/252 (35.32%), Postives = 122/252 (48.41%), Query Frame = 0 

Query: 154  PGPPPSVEEILQKIQHLGAYNYGSSNKFFSQRGVSLSQQNEKSQFP--QGPASVTQGAIG 213
            P P  S E  L            S++  FS    +  +   KS  P    P       I 
Sbjct: 1179 PRPMSSEELPLASSWRSNNSRKSSADTEFSDECTTAERVLMKSPSPALHPPQKYKDRGIL 1238

Query: 214  KPSAAESANVQQQQVQQSAQQTSQTQIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNR 273
             P         Q  ++ +   +  +   S S     + +K+ +  P    RYFI+KS N 
Sbjct: 1239 HPKRGTEDRSDQSSLKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNL 1298

Query: 274  ENLELSVQQGVWATQRSNEAKLNEAFDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSG 333
             NLE+S Q+G+W+T  SNE KLN AF  +  V L+FSV  + HFQG ++M S IG   S 
Sbjct: 1299 RNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKS- 1358

Query: 334  GNWKYAHGTAHYGQNFSLKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQ 393
             +W    G+A  G  F ++W++   L FQ   HL NP+N+N  V+ISRD QELEP +GEQ
Sbjct: 1359 QDW----GSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQ 1418

Query: 394  LASLLYLEPDGE 404
            L  L    P GE
Sbjct: 1419 LLQLWERLPLGE 1425

[Close]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match: A0A5D3C2W1 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00560 PE=4 SV=1)

HSP 1 Score: 1323.9 bits (3425), Expect = 0.0e+00
Identity = 666/710 (93.80%), Postives = 681/710 (95.92%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAA----SLPLIHSDSSALPALSNSVPPALGTAAT 60
           MED EGVLSFDFEGGLDAAPTNPAAAAA    SLPLI SDSSA P LSNS+P +LG    
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPPPLSNSLPGSLGPTLA 60

Query: 61  AEAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120
            E  GAPT NVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR
Sbjct: 61  PEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120

Query: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYG 180
           EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLG+YNYG
Sbjct: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYNYG 180

Query: 181 SSNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQT 240
           SSNKFFSQRGV L QQNEKSQFPQGPA VTQG IGKPS AESANVQQQQVQQ AQQTSQT
Sbjct: 181 SSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTSQT 240

Query: 241 QIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300
           QIQS+SNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
Sbjct: 241 QIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300

Query: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360
           FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE
Sbjct: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360

Query: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420
           LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE
Sbjct: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420

Query: 421 EEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480
           EEKAKGVNPDIGN+NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP
Sbjct: 421 EEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480

Query: 481 PHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540
           PHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG
Sbjct: 481 PHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540

Query: 541 DFMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSP 600
           DFMGPPSAMMFRGRPSQPGAMF+P GFGMMMGQGRGPFMGGMGVTGT+PARPGRPV VSP
Sbjct: 541 DFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSK 660
           LYPPPAVPS+QNINRA+KRDQRGPTSDRND+YIVGPDQNKGQEM  SGHD+GMQYKQGSK
Sbjct: 601 LYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSK 660

Query: 661 AYPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           AYPDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 AYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match: A0A1S3BC28 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=3656 GN=LOC103488286 PE=4 SV=1)

HSP 1 Score: 1323.9 bits (3425), Expect = 0.0e+00
Identity = 666/710 (93.80%), Postives = 681/710 (95.92%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAA----SLPLIHSDSSALPALSNSVPPALGTAAT 60
           MED EGVLSFDFEGGLDAAPTNPAAAAA    SLPLI SDSSA P LSNS+P +LG    
Sbjct: 1   MEDSEGVLSFDFEGGLDAAPTNPAAAAAASSSSLPLIPSDSSAPPPLSNSLPGSLGPTLA 60

Query: 61  AEAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120
            E  GAPT NVG+RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR
Sbjct: 61  PEPLGAPTANVGTRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECR 120

Query: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYG 180
           EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLG+YNYG
Sbjct: 121 EQDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGSYNYG 180

Query: 181 SSNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQT 240
           SSNKFFSQRGV L QQNEKSQFPQGPA VTQG IGKPS AESANVQQQQVQQ AQQTSQT
Sbjct: 181 SSNKFFSQRGVGLPQQNEKSQFPQGPAPVTQGVIGKPSTAESANVQQQQVQQPAQQTSQT 240

Query: 241 QIQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300
           QIQS+SNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
Sbjct: 241 QIQSVSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA 300

Query: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360
           FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE
Sbjct: 301 FDSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCE 360

Query: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420
           LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE
Sbjct: 361 LSFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKRE 420

Query: 421 EEKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480
           EEKAKGVNPDIGN+NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP
Sbjct: 421 EEKAKGVNPDIGNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWP 480

Query: 481 PHMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540
           PHMPMGRGARPFHGMQ FPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG
Sbjct: 481 PHMPMGRGARPFHGMQSFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSG 540

Query: 541 DFMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSP 600
           DFMGPPSAMMFRGRPSQPGAMF+P GFGMMMGQGRGPFMGGMGVTGT+PARPGRPV VSP
Sbjct: 541 DFMGPPSAMMFRGRPSQPGAMFTPGGFGMMMGQGRGPFMGGMGVTGTSPARPGRPVGVSP 600

Query: 601 LYPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSK 660
           LYPPPAVPS+QNINRA+KRDQRGPTSDRND+YIVGPDQNKGQEM  SGHD+GMQYKQGSK
Sbjct: 601 LYPPPAVPSAQNINRAIKRDQRGPTSDRNDRYIVGPDQNKGQEMLSSGHDEGMQYKQGSK 660

Query: 661 AYPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           AYPDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 AYPDEQYGMGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 710

[Close]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match: A0A6J1CE78 (30-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia OX=3673 GN=LOC111010855 PE=4 SV=1)

HSP 1 Score: 1293.5 bits (3346), Expect = 0.0e+00
Identity = 650/709 (91.68%), Postives = 667/709 (94.08%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MEDPEGVLSFDFEGGLDA PTNP  AA SLPLI SD SA P   A+S+S P A+G A T 
Sbjct: 1   MEDPEGVLSFDFEGGLDAGPTNP--AATSLPLIQSDPSAPPAASAVSSSGPGAVGHAVTV 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           EA GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  EAGGAVTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHL +YNYG 
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYNYGP 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQ 240
           SNKFFSQRG  LS Q EK QFPQGPA+V QG +GKPS AESANVQQ Q QQSAQQTSQTQ
Sbjct: 181 SNKFFSQRGAGLSHQIEKPQFPQGPATVNQGVVGKPSTAESANVQQPQAQQSAQQTSQTQ 240

Query: 241 IQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           IQSLSNGQPNQLN+TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQSLSNGQPNQLNRTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVS+AAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSLAAESKREE 420

Query: 421 EKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480
           EKAKGVNPDIG++NPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP
Sbjct: 421 EKAKGVNPDIGSENPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540
           HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD
Sbjct: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540

Query: 541 FMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPL 600
           FMGPPSAMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGVTG NPARPGRPV VS L
Sbjct: 541 FMGPPSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGANPARPGRPVSVSQL 600

Query: 601 YPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKA 660
           YPPPAVP SQN+NR VKRDQRGP +DRND+YI GPDQ+KGQEMPGSGHDD MQYKQGSKA
Sbjct: 601 YPPPAVPPSQNMNRVVKRDQRGPGNDRNDRYIAGPDQSKGQEMPGSGHDDEMQYKQGSKA 660

Query: 661 YPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           YPDEQYG+GTTFRNEESESEDEAPRRSRHGEGKKKRRG EGD+T +SDQ
Sbjct: 661 YPDEQYGIGTTFRNEESESEDEAPRRSRHGEGKKKRRGSEGDATVVSDQ 707

[Close]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match: A0A6J1JWQ9 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxima OX=3661 GN=LOC111490386 PE=4 SV=1)

HSP 1 Score: 1256.9 bits (3251), Expect = 0.0e+00
Identity = 638/709 (89.99%), Postives = 657/709 (92.67%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MED EG LSFDFEGGLDA PTNP  AAASLPLIHSDSS  P   A+SNS   A G   TA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNP--AAASLPLIHSDSSVPPAASAVSNSGAGAGGPPVTA 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           +A GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  DASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG YNYG+
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGT 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQ 240
           SNKFFSQRGV LSQQNEKSQFP GP ++TQG IGKPS AESANVQQQQ QQSAQQTSQ  
Sbjct: 181 SNKFFSQRGVGLSQQNEKSQFPPGPVTITQGVIGKPSVAESANVQQQQAQQSAQQTSQAP 240

Query: 241 IQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           IQS SNGQ NQLN+ +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQSASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVSIAAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREE 420

Query: 421 EKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480
           EKAKGVNPDI N+NPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRGIMWPP
Sbjct: 421 EKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGIMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540
           HMPMGRGARPFHGMQGFPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG RFSG+
Sbjct: 481 HMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGE 540

Query: 541 FMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPL 600
           FM P SAMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGVTGTNPAR GRPV   PL
Sbjct: 541 FMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPV-GPPL 600

Query: 601 YPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKA 660
           YPPPAVPSSQN+NRA+KRDQRGP SDRND+YI G DQN+GQE+PGSGHDD MQYKQGSKA
Sbjct: 601 YPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKA 660

Query: 661 YPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           YPDEQYG+GT  RNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 YPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match: A0A6J1GSL5 (30-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita moschata OX=3662 GN=LOC111457116 PE=4 SV=1)

HSP 1 Score: 1255.4 bits (3247), Expect = 0.0e+00
Identity = 637/709 (89.84%), Postives = 658/709 (92.81%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALP---ALSNSVPPALGTAATA 60
           MED EG LSFDFEGGLDA PTNP  AAASLPLIHSDSS  P   A+SN+   A G   TA
Sbjct: 1   MEDSEGGLSFDFEGGLDAGPTNP--AAASLPLIHSDSSVPPAASAVSNTGAGAGGPPVTA 60

Query: 61  EAPGAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120
           +A GA TGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE
Sbjct: 61  DASGAATGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECRE 120

Query: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGS 180
           QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPP VEEILQKIQHLG YNYG+
Sbjct: 121 QDCVYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLGPYNYGT 180

Query: 181 SNKFFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQ 240
           SNKFFSQRGV LSQQNEKSQFP GPA+VTQG IGKPS AESANVQQQQ QQSAQQTSQ  
Sbjct: 181 SNKFFSQRGVGLSQQNEKSQFPPGPATVTQGVIGKPSVAESANVQQQQAQQSAQQTSQAP 240

Query: 241 IQSLSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300
           IQ+ SNGQ NQLN+ +TSLP GISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF
Sbjct: 241 IQTASNGQVNQLNRNSTSLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAF 300

Query: 301 DSADNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360
           DSADNVILIFSVNRTRHFQGCAKMM+RIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL
Sbjct: 301 DSADNVILIFSVNRTRHFQGCAKMMTRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCEL 360

Query: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREE 420
           SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDG+LMAVSIAAESKREE
Sbjct: 361 SFQKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGDLMAVSIAAESKREE 420

Query: 421 EKAKGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPP 480
           EKAKGVNPDI N+NPDIVPFEDNEEEEEEESEEEEEESFGQSVG PAQGRGRGRG+MWPP
Sbjct: 421 EKAKGVNPDIRNENPDIVPFEDNEEEEEEESEEEEEESFGQSVGPPAQGRGRGRGMMWPP 480

Query: 481 HMPMGRGARPFHGMQGFPPGMMGPDGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGD 540
           HMPMGRGARPFHGMQGFPPGMMGPDG+SYGPVTPDGFPMPDIFGMAPRGF PYG RFSG+
Sbjct: 481 HMPMGRGARPFHGMQGFPPGMMGPDGMSYGPVTPDGFPMPDIFGMAPRGFNPYGARFSGE 540

Query: 541 FMGPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPL 600
           FM P SAMMFRGRPSQPGAMF P GFGMMMGQGRGPFMGGMGVTGTNPAR GRPV   PL
Sbjct: 541 FMNPQSAMMFRGRPSQPGAMFPPGGFGMMMGQGRGPFMGGMGVTGTNPARAGRPV-GPPL 600

Query: 601 YPPPAVPSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGSKA 660
           YPPPAVPSSQN+NRA+KRDQRGP SDRND+YI G DQN+GQE+PGSGHDD MQYKQGSKA
Sbjct: 601 YPPPAVPSSQNMNRAMKRDQRGPGSDRNDRYIAGSDQNRGQEIPGSGHDDEMQYKQGSKA 660

Query: 661 YPDEQYGVGTTFRNEESESEDEAPRRSRHGEGKKKRRGPEGDSTAISDQ 707
           YPDEQYG+GT  RNEESESEDEAPRRSRHGEGKKKRRG EGD+TAISDQ
Sbjct: 661 YPDEQYGMGTAIRNEESESEDEAPRRSRHGEGKKKRRGSEGDATAISDQ 706

[Close]
BLAST of CcUC03G050440 vs. TAIR 10
Match: AT1G30460.1 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 767.7 bits (1981), Expect = 8.2e-222
Identity = 439/700 (62.71%), Postives = 491/700 (70.14%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALPALSNSVPPALGTAATAEAP 60
           MED +G LSFDFEGGLD+ P    A+    P  +S S+           A+  A T +  
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQNTASVPVAPPENSSSA-----------AVNVAPTYDHS 60

Query: 61  GAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDC 120
            A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQDC
Sbjct: 61  SATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDC 120

Query: 121 VYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSSNK 180
           VYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L  YNYG +N+
Sbjct: 121 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TNR 180

Query: 181 FFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQIQS 240
            +  R V+   Q+     PQG   +     G+P   ES N+QQQQ QQ  QQ+     Q+
Sbjct: 181 LYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQT 240

Query: 241 LSNGQPNQLNKTATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSA 300
           L     +Q N+T+  LPQG++RYF+VKS NREN ELSVQQGVWATQRSNEAKLNEAFDS 
Sbjct: 241 LIPNPADQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSV 300

Query: 301 DNVILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGQNFSLKWLKLCELSFQ 360
           +NVILIFSVNRTRHFQGCAKM SRIGG + GGNWK+ HGTA YG+NFS+KWLKLCELSF 
Sbjct: 301 ENVILIFSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRNFSVKWLKLCELSFH 360

Query: 361 KTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSIAAESKREEEKA 420
           KTR+LRNPYNENLPVKISRDCQELEPS+GEQLASLLYLEPD ELMA+SIAAE+KREEEKA
Sbjct: 361 KTRNLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAISIAAEAKREEEKA 420

Query: 421 KGVNPDIGNKNPDIVPFEDNEEEEEEESEEEEEESFGQSVGLPAQGRGRGRGIMWPPHMP 480
           KGVNP+   +NPDIVPFEDNEEEEEEE E EEEE   +S+    QGRGRGRGIMWPP MP
Sbjct: 421 KGVNPESRAENPDIVPFEDNEEEEEEEDESEEEE---ESMAGGPQGRGRGRGIMWPPQMP 480

Query: 481 MGRGARPFHGMQGFPPGMMGP-DGLSYGPVTPDGFPMPDIFGMAPRGFGPYGPRFSGDFM 540
           +GRG RP  GM GFP G+MGP D   YGP   +G  MPD FGM PR FGPYGPRF GDF 
Sbjct: 481 LGRGIRPMPGMGGFPLGVMGPGDAFPYGPGGYNG--MPDPFGMGPRPFGPYGPRFGGDFR 540

Query: 541 GPPSAMMFRGRPSQPGAMFSPAGFGMMMGQGRGPFMGGMGVTGTNPARPGRPVCVSPLYP 600
           GP   MMF GRP Q    F   G+G MMG GRGP MGGMG    N  R GR     P+Y 
Sbjct: 541 GPVPGMMFPGRPPQ---QFPHGGYG-MMGGGRGPHMGGMG----NAPRGGR-----PMYY 600

Query: 601 PPAV----PSSQNINRAVKRDQRGPTSDRNDKYIVGPDQNKGQEMPGSGHDDGMQYKQGS 660
           PPA     P   N     + D+RG + D              Q+   + HD         
Sbjct: 601 PPATSSARPGPSNRKTPERSDERGVSGD--------------QQNQDASHD--------- 631

Query: 661 KAYPDEQYGVGTTFRNEESES--EDEAPRRSRHGEGKKKR 694
                EQ+ VG + RNEESES  EDEAPRRSRHGEGKK+R
Sbjct: 661 ----MEQFEVGNSLRNEESESEDEDEAPRRSRHGEGKKRR 631

[Close]
BLAST of CcUC03G050440 vs. TAIR 10
Match: AT1G30460.2 (cleavage and polyadenylation specificity factor 30 )

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-73
Identity = 151/262 (57.63%), Postives = 176/262 (67.18%), Query Frame = 0 

Query: 1   MEDPEGVLSFDFEGGLDAAPTNPAAAAASLPLIHSDSSALPALSNSVPPALGTAATAEAP 60
           MED +G LSFDFEGGLD+ P    A+    P  +S S+           A+  A T +  
Sbjct: 1   MEDADG-LSFDFEGGLDSGPVQNTASVPVAPPENSSSA-----------AVNVAPTYDHS 60

Query: 61  GAPTGNVGSRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDC 120
            A     G  RSFRQTVCRHWLR LCMKGDACGFLHQ+DK+RMPICRFFRLYGECREQDC
Sbjct: 61  SATVAGAGRGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDC 120

Query: 121 VYKHTNEDIKECNMYKFGFCPNGPDCRYRHAKLPGPPPSVEEILQKIQHLGAYNYGSSNK 180
           VYKHTNEDIKECNMYK GFCPNGPDCRYRHAKLPGPPP VEE+LQKIQ L  YNYG +N+
Sbjct: 121 VYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYG-TNR 180

Query: 181 FFSQRGVSLSQQNEKSQFPQGPASVTQGAIGKPSAAESANVQQQQVQQSAQQTSQTQIQS 240
            +  R V+   Q+     PQG   +     G+P   ES N+QQQQ QQ  QQ+     Q+
Sbjct: 181 LYQARNVAPQLQDR----PQGQVPMQ----GQPQ--ESGNLQQQQ-QQQPQQSQHQVSQT 238

Query: 241 LSNGQPNQLNKTATSLPQGISR 263
           L     +Q N+T+  LPQG++R
Sbjct: 241 LIPNPADQTNRTSHPLPQGVNR 238

[Close]
BLAST of CcUC03G050440 vs. TAIR 10
Match: AT4G11970.1 (YTH family protein )

HSP 1 Score: 136.3 bits (342), Expect = 9.2e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 0 

Query: 246 PNQLNK---TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 305
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 306 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 365
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 366 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLL 397
           T HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]
BLAST of CcUC03G050440 vs. TAIR 10
Match: AT4G11970.2 (YTH family protein )

HSP 1 Score: 136.3 bits (342), Expect = 9.2e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 0 

Query: 246 PNQLNK---TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 305
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 306 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 365
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 366 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLL 397
           T HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

[Close]
BLAST of CcUC03G050440 vs. TAIR 10
Match: AT4G11970.3 (YTH family protein )

HSP 1 Score: 136.3 bits (342), Expect = 9.2e-32
Identity = 76/155 (49.03%), Postives = 99/155 (63.87%), Query Frame = 0 

Query: 246 PNQLNK---TATSLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSADN 305
           P+QL        S P   +RYFI+KS N +N+++SV++G+WATQ  NE  L  AF  +  
Sbjct: 54  PDQLESAKANKNSKPGYRTRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGR 113

Query: 306 VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAH-YGQNFSLKWLKLCELSFQK 365
           VILIFSVN +  FQG A+M+S +G       W    G  + +G++F +KWL+L EL FQK
Sbjct: 114 VILIFSVNMSGFFQGYAEMLSPVGWR-RDQIWSQGGGKNNPWGRSFKVKWLRLSELPFQK 173

Query: 366 TRHLRNPYNENLPVKISRDCQELEPSIGEQLASLL 397
           T HL+NP N+  PVKISRDCQEL   IGE L  LL
Sbjct: 174 TLHLKNPLNDYKPVKISRDCQELPEDIGEALCELL 207

The following BLAST results are available for this feature:
BLAST of CcUC03G050440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894441.10.0e+0094.3530-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid... [more]
XP_008445183.10.0e+0093.80PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis me... [more]
XP_022140120.10.0e+0091.6830-kDa cleavage and polyadenylation specificity factor 30 [Momordica charantia][more]
XP_038889902.10.0e+0091.4130-kDa cleavage and polyadenylation specificity factor 30-like [Benincasa hispid... [more]
XP_023541976.10.0e+0090.1330-kDa cleavage and polyadenylation specificity factor 30-like [Cucurbita pepo s... [more]
BLAST of CcUC03G050440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9LNK91.2e-22062.7130-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thalian... [more]
Q0DA502.8e-20658.16Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica OX... [more]
B2RR832.8e-2539.113'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1[more]
Q5R7466.2e-2535.713'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2[more]
Q9H6S03.1e-2435.323'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2[more]
BLAST of CcUC03G050440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C2W10.0e+0093.8030-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo var. m... [more]
A0A1S3BC280.0e+0093.8030-kDa cleavage and polyadenylation specificity factor 30 OS=Cucumis melo OX=365... [more]
A0A6J1CE780.0e+0091.6830-kDa cleavage and polyadenylation specificity factor 30 OS=Momordica charantia... [more]
A0A6J1JWQ90.0e+0089.9930-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita maxi... [more]
A0A6J1GSL50.0e+0089.8430-kDa cleavage and polyadenylation specificity factor 30-like OS=Cucurbita mosc... [more]
BLAST of CcUC03G050440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30460.18.2e-22262.71cleavage and polyadenylation specificity factor 30 [more]
AT1G30460.22.8e-7357.63cleavage and polyadenylation specificity factor 30 [more]
AT4G11970.19.2e-3249.03YTH family protein [more]
AT4G11970.29.2e-3249.03YTH family protein [more]
AT4G11970.39.2e-3249.03YTH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 434..454
NoneNo IPR availableGENE3D4.10.1000.10coord: 66..129
e-value: 1.3E-15
score: 59.2
NoneNo IPR availableGENE3D3.10.590.10ph1033 like domainscoord: 239..399
e-value: 2.1E-53
score: 182.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 437..456
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 581..706
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 191..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 671..700
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 412..475
NoneNo IPR availablePANTHERPTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGcoord: 1..703
NoneNo IPR availablePANTHERPTHR12357:SF106ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45coord: 1..703
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 72..98
e-value: 3.5E-4
score: 29.9
coord: 128..152
e-value: 0.052
score: 22.7
coord: 100..126
e-value: 0.051
score: 22.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 126..153
score: 12.089031
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 72..99
score: 12.83077
IPR007275YTH domainPFAMPF04146YTHcoord: 261..324
e-value: 1.2E-26
score: 93.9
coord: 340..395
e-value: 4.1E-18
score: 66.2
IPR007275YTH domainPROSITEPS50882YTHcoord: 261..396
score: 58.774452
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 74..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G050440.1CcUC03G050440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000381 regulation of alternative mRNA splicing, via spliceosome
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:1990247 N6-methyladenosine-containing RNA binding
molecular_function GO:0003723 RNA binding