CcUC03G049510 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G049510
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 7461540 .. 7464279 (-)
RNA-Seq ExpressionCcUC03G049510
SyntenyCcUC03G049510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGTCATCCTCGTCACTGAATGGATCACCAGCAGATTGTCCTAGTAGTTCAAATAGCAGTCCTCCAGCCACCCGTACTGGAACCTGTATGGAAGTTAACTTTTATTTATAAAAAATAAATAAATAAAATAATAAAAAAAAGCATATCCATGCAAATCTTAAACCACCATTAATATAAATGACTTGTTTTAGGACGATACTCTTGACTATTCAGGCACGACTGTCAGCTAATTGCTAGTTTAGTTATTCACAGATTTATTATGATAACTATAGCAACTTAAAAACACTTGAATTGACTCGTAACATCAATGAACATAATAAAAAGCCAAGAAATAATTCTGGGTTAAGGATGGAGGCTTTTAGTTTAGTGATACTAGAGATATCATTTTGGCCAAAAGATTGTCTGGGTTTGTGTTTTCATTTGCAAACTGAGAGTTAGTGATTTTAATCGAGATATTTCAAACAAATTGATTTTCATCAGTTGAGCTATCCTTACAGAATAGCTCCACATACCAAGGCTTGAACTTTTAGATTTTCCAGAGAACTTTAATGGTATACCTAGAGCTCAGTTTTGTATCCTGAAATTGTAAAGAGACTAGGGACTTGCTGGCAAACTTTTTTCAAAATAACTATATATTTTTACAATCAAAACTGTGATTAGCTGACCTACAAACTAAAGAAAAATAAGAAGACCAAATTATAGAAATGATATGAGGGTTCTTGTTAGAGATAATGTTGCTCCAACCACATTCTACAAATAGAGAATGTTAAGCTATAAACTAAGAGGAAATTTCACCAAACTGACATGGCTATGTCATGTGTAAAAGATGACAATTTAACGAGGTAATATATTAATATGTAACCTGAATTATTTCCCCTTGCAAAAAAAAAAACCACTGTGATAGTTTTCCAATTAGCAGGAGTGCAGGACAGTAGTCCTGTATCTCATGTTACTTAATATTGACAATGGAATTTCTTCTTGTAACTAATTCTCTGTTAGAAATGCTTCTTATTACTATATATATAAAAGCACTCAAACAGCATGTATACTAGGGAGAATTCCACCTCATAGAAAAGATGCTTCATGCGGTCACTTATCAGGCGACTTTCATCTCTTAAAGCCAAACTAATGGCAGGATGCAACCAGTGAGCAGTTCTGAGCCACGCCTCCACAGAAGGGTGGCTTGCAGAGACATGGCACCACCATATAGGTCCAGCTGGTTGCTTCCAATAAGGTGCTACAAGATCTGCAACAGCAAGGTCGTCTTCTTCATCCATAAAATCAAACGATATTGAGGCCCATTCAGCATCTACTTGTATTGTTTGAACCAGCTCTGATATTCTGTCCCATCCTATAGGTAACCAATTATTACTCTCAACTCTTTCTCTTTCACAAGACTGGCCACATTGGCTCTTCAGATCCTCTGGAGATGTAGGTTCGAATAATCTTTTCCTCTCATGTGTATTGGCATTGCCATTATTCAGTTCAGTTGTAGGCAACATTGTGGTTGGAAATTCACTATTCATTTGTCGCCTATCTGTCATCTTGGATTTGGATTTTGAATCACTTGATTTTTTTGGTCTCCCAATATATTCAAAAGCACAAATAAGCCCATCTGTCCAAAGATCACATCCAAGTGCCGCATCCTTGTTAAAGGTTTTGTGGGCTTCTGGTTTCTCCACACTATTTTTATGAGAGCTATGGTGGACATCCATTTTCCTTAAATTTGTATCCTGATAAGCAGATCAGGGAAATGACATATCAGCAGCAATGCAAGAATATTCTCATTCTAGAGATGCACAGACAACCTCGTTCCTATCCTGGAACCACTCACTCTTCGGCATGAACAGTCCATGTAGAACGACAAAAACAAGCATCTCTTTTATAGGCTCCTTTTTTCGTTTGAAGTTTAAATTCACTCCCATGAATAATCATAAAAGTGTTCAGTTCAGCTCCAATCACCAATACAATACCGCACCAAAAAGTACGCACAATCAGCAGAATCAACCATCAAGATAATCGAACTAACAAGTTTTTGAAGCAAAATCCCCTCGTTACTCCGTTTCGGGAACTTGTACAAATCAATTATCAGCCAGCATGCTAATTTCTGACTAAATTGCCTATTATACCGATCTAGATGCAAGAAAATGGAACAAAATTAAGGAAAATTTGAACTCACCGGCAAAGTAAGGCGATGCGTCGAACTAAACCAGAAAAAAGTTCGCCACTGTTGGAGACTCCACGGTGAGTGGATAAAATGCTTCTGTAGCTGTGCGTCGAAGCTCCGCTACTCCTAACCGGAGCCGCAAGCGTTATCCATGGAGAATCATGAGCTGGGAAGCGGCAAGGCTTCAACAGTCGTCGTCGGGCTTACTACCTTCAATTCCATTTTGTCATATGGTAGATTAAAGTTTTTTAGATTTTGGGCAAAATGAAATATATACCCAACTTTTTTAAGGTTTTTTAAATGAGTTTTTTTAACTTTATGTCCACTAGCATAGTTTTATTCCACTTTACATATGTCGATTATATATATATATATTTTAGTCTGTCTAATCAGTTTACACATTTCGACTAATCTCACGTACAAATCACTTGATTTTAAATATTTTAGTGTCAAAAAAATCCACATAATACCTATATGATATTAAATCACCCATGACTCCTTCAGTCTTTAACTTTTTTTATGTTCCCACTGCATCTCAAAATAATTTTATTCTAGAATGTAGGGTAG

mRNA sequence

ATGGGAATGTCATCCTCGTCACTGAATGGATCACCAGCAGATTGTCCTAGTAGTTCAAATAGCAGTCCTCCAGCCACCCGTACTGGAACCTATTTTCCAGAGAACTTTAATGGTATACCTAGAGCTCAGTTTTGTATCCTGAAATTCCAAACTAATGGCAGGATGCAACCAGTGAGCAGTTCTGAGCCACGCCTCCACAGAAGGGTGGCTTGCAGAGACATGGCACCACCATATAGGTCCAGCTGGTTGCTTCCAATAAGCTCTGATATTCTGTCCCATCCTATAGGTAACCAATTATTACTCTCAACTCTTTCTCTTTCACAAGACTGGCCACATTGGCTCTTCAGATCCTCTGGAGATGTAGGTTCGAATAATCTTTTCCTCTCATGTGTATTGGCATTGCCATTATTCAGTTCAGTTGTAGGCAACATTGTGGTTGGAAATTCACTATTCATTTGTCGCCTATCTGTCATCTTGGATTTGGATTTTGAATCACTTGATTTTTTTGGTCTCCCAATATATTCAAAAGCACAAATAAGCCCATCTGTCCAAAGATCACATCCAAGTGCCGCATCCTTGTTAAAGATCAGGGAAATGACATATCAGCAGCAATGCAAGAATATTCTCATTCTAGAGATGCACAGACAACCTCCTGTGCGTCGAAGCTCCGCTACTCCTAACCGGAGCCGCAAGCGTTATCCATGGAGAATCATGAGCTGGGAAGCGGCAAGGCTTCAACAGTCGTCGTCGGGCTTACTACCTTCAATTCCATTTTGTCATATGAATGTAGGGTAG

Coding sequence (CDS)

ATGGGAATGTCATCCTCGTCACTGAATGGATCACCAGCAGATTGTCCTAGTAGTTCAAATAGCAGTCCTCCAGCCACCCGTACTGGAACCTATTTTCCAGAGAACTTTAATGGTATACCTAGAGCTCAGTTTTGTATCCTGAAATTCCAAACTAATGGCAGGATGCAACCAGTGAGCAGTTCTGAGCCACGCCTCCACAGAAGGGTGGCTTGCAGAGACATGGCACCACCATATAGGTCCAGCTGGTTGCTTCCAATAAGCTCTGATATTCTGTCCCATCCTATAGGTAACCAATTATTACTCTCAACTCTTTCTCTTTCACAAGACTGGCCACATTGGCTCTTCAGATCCTCTGGAGATGTAGGTTCGAATAATCTTTTCCTCTCATGTGTATTGGCATTGCCATTATTCAGTTCAGTTGTAGGCAACATTGTGGTTGGAAATTCACTATTCATTTGTCGCCTATCTGTCATCTTGGATTTGGATTTTGAATCACTTGATTTTTTTGGTCTCCCAATATATTCAAAAGCACAAATAAGCCCATCTGTCCAAAGATCACATCCAAGTGCCGCATCCTTGTTAAAGATCAGGGAAATGACATATCAGCAGCAATGCAAGAATATTCTCATTCTAGAGATGCACAGACAACCTCCTGTGCGTCGAAGCTCCGCTACTCCTAACCGGAGCCGCAAGCGTTATCCATGGAGAATCATGAGCTGGGAAGCGGCAAGGCTTCAACAGTCGTCGTCGGGCTTACTACCTTCAATTCCATTTTGTCATATGAATGTAGGGTAG

Protein sequence

MGMSSSSLNGSPADCPSSSNSSPPATRTGTYFPENFNGIPRAQFCILKFQTNGRMQPVSSSEPRLHRRVACRDMAPPYRSSWLLPISSDILSHPIGNQLLLSTLSLSQDWPHWLFRSSGDVGSNNLFLSCVLALPLFSSVVGNIVVGNSLFICRLSVILDLDFESLDFFGLPIYSKAQISPSVQRSHPSAASLLKIREMTYQQQCKNILILEMHRQPPVRRSSATPNRSRKRYPWRIMSWEAARLQQSSSGLLPSIPFCHMNVG
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009635Neural proliferation differentiation control-1PFAMPF06809NPDC1coord: 124..225
e-value: 1.5E-4
score: 20.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G049510.1CcUC03G049510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane