CcUC03G049120 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G049120
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Rho_N domain-containing protein
Location	CicolChr03: 7043815 .. 7045392 (-)
RNA-Seq Expression	CcUC03G049120
Synteny	CcUC03G049120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACGTGGGAGCATGAGCTTCAGAAGCCGTGTGGCCCAGCGGTAAATGGCAATAAAGAAGAACCGACCTATATAATATACGTACAGCTTGTGGATCTGATGCAATTTGGATATTCAAAGAATTGCATTTTTCTGGAAAAAAATCAGATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATATGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGGTATCGAGCTTGAAACTCCCAATAACCAGTCTTGAATTTCGCAAATCTGTTGTTTGTCCATATCATTCAGCTTTGTCTGCTGTATTTGAAGTGAACAATCTATTTTTGTTTTGTCATCACTTTTTATTGCAGAATTTGTAGATCTTGTGTACTTCACAAGCTGAGTGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGACATTGCAGATGTTTATCCTAGTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAACGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGACGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGTAATTTCTTGATTGTCTCGTCTGACGCTTTTGTGGGAAATTTGGTTCACTTTTAAATCCATGAATGCATCTCGCAAGAACTAAAATTTATAATTTATAAACATCTCTATTAATTGGCAATGTGATTCTATTCCCGAACCAACATACACATCAAACAAATACATTTAGCAGCATTGTTATGGCCTTGTGAATAATAGCATGGCGACACTTCCAAGTGAATATGCATCGTCACAAGCTATGATAAAAAGCTTCTATCTCGTATCTTTACTAAATAATAGAGCTATGGACAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATTCATGATACTTCGCCACCAGCTACAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAAATCATATCATCAGGGCATTTTGAGGAGAAATCATTGGTCTCTTCTGTTTTTATTTTTTTTACCTTTCCTTTGGCGTTCCTCTTTCTACCTGCTTCACATGTTTTGATAACAAAATTGCAAGTTGATCTTCCGGTGGATCGTAACATTCGAAAGACTTTTGTTCATACATTAC

mRNA sequence

ATGTCCACGTGGGAGCATGAGCTTCAGAAGCCGTGTGGCCCAGCGGTAAATGGCAATAAAGAAGAACCGACCTATATAATATACGTACAGCTTGTGGATCTGATGCAATTTGGATATTCAAAGAATTGCATTTTTCTGGAAAAAAATCAGATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATATGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGACATTGCAGATGTTTATCCTAGTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAACGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGACGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATTCATGATACTTCGCCACCAGCTACAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAAATCATATCATCAGGGCATTTTGAGGAGAAATCATTGGTCTCTTCTGTTTTTATTTTTTTTACCTTTCCTTTGGCGTTCCTCTTTCTACCTGCTTCACATGTTTTGATAACAAAATTGCAAGTTGATCTTCCGGTGGATCGTAACATTCGAAAGACTTTTGTTCATACATTAC

Coding sequence (CDS)

ATGTCCACGTGGGAGCATGAGCTTCAGAAGCCGTGTGGCCCAGCGGTAAATGGCAATAAAGAAGAACCGACCTATATAATATACGTACAGCTTGTGGATCTGATGCAATTTGGATATTCAAAGAATTGCATTTTTCTGGAAAAAAATCAGATGGAAGCAATAGTTTTCCAGCCTCGGATTCTAAACCGCTTTCCCAATATGGTCTCTTTGGGAAGGAGACCCACGTTCGCTTCGAAAGACATTGCAGATGTTTATCCTAGTAAGAGCATTAAATTATCTGTTACGAACAATAGGCCAGATGGAAATGGAGGGAATCGGCCTCCTCGTAGAAACTCTGCGCCAGGAAAAACGAGGAAGAATGAAGTTTCTTCGAGGAAAACAGAAGCCCATAAGAACGAGGAAGACCTAAAAGAATCAAAATACAATAACCAGGAAGAAATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCTAAGGAATCCGCAAGCTCCAATGATGAAGAATCCTGCAAGGACGAACATGGAGCCGAGTCTATTTTAGAGACTCTTCGTGAATCAAGGAAGCAGGTGAAAGGCAAAACTTCAAAGAAGGTAGGAGCTAAAGCGTTGAGAAGTAAAGGCACGTCTGAAGGGAAGGAAATTCATGATACTTCGCCACCAGCTACAGATTTCAAGTTGGTTCGACCACCCTCTAAATTTGTGAAGAGATCGCCAATCCCATCTCCCCAACGAGGACGTGGTTCGCATCTTAGAGTTGATGCATCTCAGGCCATAGCTGAAAGCAGGGAGTTGAAGGTCCCAAGTATAGAGAATATGAAACTTACCGAGCTGAAAGCACTAGCAAAATCTAGAGGAATTAAGGGTTACTCCAAATTGAAGAAAAATGAGCTAATTGAACTCCTGGGATCCTAA

Protein sequence

MSTWEHELQKPCGPAVNGNKEEPTYIIYVQLVDLMQFGYSKNCIFLEKNQMEAIVFQPRILNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS

Homology

[Close]

BLAST of CcUC03G049120 vs. NCBI nr
Match: XP_038893912.1 (SAP-like protein BP-73 isoform X3 [Benincasa hispida])

HSP 1 Score: 416.4 bits (1069), Expect = 2.1e-112
Identity = 226/258 (87.60%), Postives = 238/258 (92.25%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRR 110
           MEA++FQPRIL RFP +VSLGRRPTFASKDIADVYPSK I+LSV+NNRPDG  GNRPPRR
Sbjct: 1   MEAVIFQPRILIRFPKLVSLGRRPTFASKDIADVYPSKGIQLSVSNNRPDGKAGNRPPRR 60

Query: 111 NSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEES 170
            SAPGKTRKNE SSRKTEAH NEEDLK+SKYNNQEEIIALFRKI+TSIAKESASSNDEES
Sbjct: 61  ISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEES 120

Query: 171 CKDEHGAESILETLRESRKQVK----GKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFK 230
           CKDEHGAESILETLRESRKQVK    GK+SKK GAKALRS+GTSE KEIHD SPPA DF+
Sbjct: 121 CKDEHGAESILETLRESRKQVKELWTGKSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQ 180

Query: 231 LVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRG 290
           LVRPPSKFVKRSPIPSP RG GSH RVDA+QAIAESRELK PSI+NMKLTELKALAKSRG
Sbjct: 181 LVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESRELKFPSIKNMKLTELKALAKSRG 240

Query: 291 IKGYSKLKKNELIELLGS 305
           IKGYSKLKKNELIELLGS
Sbjct: 241 IKGYSKLKKNELIELLGS 258

[Close]

BLAST of CcUC03G049120 vs. NCBI nr
Match: XP_038893911.1 (SAP-like protein BP-73 isoform X2 [Benincasa hispida])

HSP 1 Score: 409.8 bits (1052), Expect = 2.0e-110
Identity = 226/275 (82.18%), Postives = 238/275 (86.55%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASK---------------------DIADVYPSKS 110
           MEA++FQPRIL RFP +VSLGRRPTFASK                     DIADVYPSK 
Sbjct: 1   MEAVIFQPRILIRFPKLVSLGRRPTFASKGIEPEIVLNFANPLFNLLNLADIADVYPSKG 60

Query: 111 IKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIA 170
           I+LSV+NNRPDG  GNRPPRR SAPGKTRKNE SSRKTEAH NEEDLK+SKYNNQEEIIA
Sbjct: 61  IQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIA 120

Query: 171 LFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGT 230
           LFRKI+TSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGK+SKK GAKALRS+GT
Sbjct: 121 LFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKSSKKAGAKALRSEGT 180

Query: 231 SEGKEIHDTSPPATDFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPS 290
           SE KEIHD SPPA DF+LVRPPSKFVKRSPIPSP RG GSH RVDA+QAIAESRELK PS
Sbjct: 181 SEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESRELKFPS 240

Query: 291 IENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 305
           I+NMKLTELKALAKSRGIKGYSKLKKNELIELLGS
Sbjct: 241 IKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 275

[Close]

BLAST of CcUC03G049120 vs. NCBI nr
Match: XP_038893910.1 (SAP-like protein BP-73 isoform X1 [Benincasa hispida])

HSP 1 Score: 404.1 bits (1037), Expect = 1.1e-108
Identity = 226/279 (81.00%), Postives = 238/279 (85.30%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASK---------------------DIADVYPSKS 110
           MEA++FQPRIL RFP +VSLGRRPTFASK                     DIADVYPSK 
Sbjct: 1   MEAVIFQPRILIRFPKLVSLGRRPTFASKGIEPEIVLNFANPLFNLLNLADIADVYPSKG 60

Query: 111 IKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIA 170
           I+LSV+NNRPDG  GNRPPRR SAPGKTRKNE SSRKTEAH NEEDLK+SKYNNQEEIIA
Sbjct: 61  IQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNEEDLKKSKYNNQEEIIA 120

Query: 171 LFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVK----GKTSKKVGAKALR 230
           LFRKI+TSIAKESASSNDEESCKDEHGAESILETLRESRKQVK    GK+SKK GAKALR
Sbjct: 121 LFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKELWTGKSSKKAGAKALR 180

Query: 231 SKGTSEGKEIHDTSPPATDFKLVRPPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESREL 290
           S+GTSE KEIHD SPPA DF+LVRPPSKFVKRSPIPSP RG GSH RVDA+QAIAESREL
Sbjct: 181 SEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHPRVDATQAIAESREL 240

Query: 291 KVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 305
           K PSI+NMKLTELKALAKSRGIKGYSKLKKNELIELLGS
Sbjct: 241 KFPSIKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 279

[Close]

BLAST of CcUC03G049120 vs. NCBI nr
Match: KGN65614.1 (hypothetical protein Csa_019894 [Cucumis sativus])

HSP 1 Score: 345.1 bits (884), Expect = 6.0e-91
Identity = 197/255 (77.25%), Postives = 218/255 (85.49%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRR 110
           MEA+VF PRIL RFPN++SL RRPTFASKD+ADVYPSK+I+ SV+ +RPDGN GNRPPRR
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVYPSKNIQPSVSKSRPDGNAGNRPPRR 60

Query: 111 NSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEES 170
           NS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQTSIAKESASS DEES
Sbjct: 61  NSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKESASSIDEES 120

Query: 171 CKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTS-PPATDFKLVR 230
            KDE+   SILETLRESRKQ+KGKTSKK GAK LRSKG SE KE+HD S PPA DFKLVR
Sbjct: 121 RKDENA--SILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVR 180

Query: 231 PPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKG 290
           PPSKFVKRSPIP         L+VDASQAIAESRELK PS ENMKLTELKALAKSRGIKG
Sbjct: 181 PPSKFVKRSPIP---------LKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKG 240

Query: 291 YSKLKKNELIELLGS 305
           YSKLKKNEL+E+L S
Sbjct: 241 YSKLKKNELMEILRS 244

[Close]

BLAST of CcUC03G049120 vs. NCBI nr
Match: XP_008446702.1 (PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein BP-73 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-85
Identity = 200/305 (65.57%), Postives = 223/305 (73.11%), Query Frame = 0


Query: 1   MSTWEHELQKPCGPAVNGNKEEPTYIIYVQLVDLMQFGYSKNCIFLEKNQMEAIVFQPRI 60
           MSTWEH+LQK  GP+   +        Y     L QF                 +F+ + 
Sbjct: 5   MSTWEHDLQKLNGPSGKSDGSSSFPASYSN--PLSQFN----------------LFEKKT 64

Query: 61  LNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKN 120
             RF ++++L         DIADVYPSK+I+LSV+NNRPDGN  NRPPRRNS PGKTRK+
Sbjct: 65  HVRFESLLNLA--------DIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLPGKTRKS 124

Query: 121 EVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESI 180
           E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SIAKESASS DEES KDEHGA SI
Sbjct: 125 ESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSI 184

Query: 181 LETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTS-PPATDFKLVRPPSKFVKRSP 240
           LETLRE RKQ+KGKTSKK GAK  RSKGTSE KE+HD S PPA DFKLVRPPSKFVKRSP
Sbjct: 185 LETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSP 244

Query: 241 IPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELI 300
           IP          +VDASQAIAESRELK PSIENMKL ELKALAKSRGIKGYSKLKKNEL+
Sbjct: 245 IPP---------KVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELM 274

Query: 301 ELLGS 305
           E+L S
Sbjct: 305 EILRS 274

[Close]

BLAST of CcUC03G049120 vs. ExPASy Swiss-Prot
Match: Q94K75 (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RHON1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-06
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 254 DASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 305
           DA +   E+ E  V  +  +KL EL+ +AKSRG+KG SK+KK EL+ELLGS
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

[Close]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL
Match: A0A0A0LX66 (Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.9e-91
Identity = 197/255 (77.25%), Postives = 218/255 (85.49%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRR 110
           MEA+VF PRIL RFPN++SL RRPTFASKD+ADVYPSK+I+ SV+ +RPDGN GNRPPRR
Sbjct: 1   MEAVVFLPRILIRFPNLISLRRRPTFASKDVADVYPSKNIQPSVSKSRPDGNAGNRPPRR 60

Query: 111 NSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEES 170
           NS PGK RK+E SSRKTE  K+EE +K+S+ N+QEE+IALFRKIQTSIAKESASS DEES
Sbjct: 61  NSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKESASSIDEES 120

Query: 171 CKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTS-PPATDFKLVR 230
            KDE+   SILETLRESRKQ+KGKTSKK GAK LRSKG SE KE+HD S PPA DFKLVR
Sbjct: 121 RKDENA--SILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPPAADFKLVR 180

Query: 231 PPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKG 290
           PPSKFVKRSPIP         L+VDASQAIAESRELK PS ENMKLTELKALAKSRGIKG
Sbjct: 181 PPSKFVKRSPIP---------LKVDASQAIAESRELKFPSTENMKLTELKALAKSRGIKG 240

Query: 291 YSKLKKNELIELLGS 305
           YSKLKKNEL+E+L S
Sbjct: 241 YSKLKKNELMEILRS 244

[Close]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.8e-86
Identity = 200/305 (65.57%), Postives = 223/305 (73.11%), Query Frame = 0


Query: 1   MSTWEHELQKPCGPAVNGNKEEPTYIIYVQLVDLMQFGYSKNCIFLEKNQMEAIVFQPRI 60
           MSTWEH+LQK  GP+   +        Y     L QF                 +F+ + 
Sbjct: 5   MSTWEHDLQKLNGPSGKSDGSSSFPASYSN--PLSQFN----------------LFEKKT 64

Query: 61  LNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKN 120
             RF ++++L         DIADVYPSK+I+LSV+NNRPDGN  NRPPRRNS PGKTRK+
Sbjct: 65  HVRFESLLNLA--------DIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLPGKTRKS 124

Query: 121 EVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESI 180
           E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SIAKESASS DEES KDEHGA SI
Sbjct: 125 ESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSI 184

Query: 181 LETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTS-PPATDFKLVRPPSKFVKRSP 240
           LETLRE RKQ+KGKTSKK GAK  RSKGTSE KE+HD S PPA DFKLVRPPSKFVKRSP
Sbjct: 185 LETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSP 244

Query: 241 IPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELI 300
           IP          +VDASQAIAESRELK PSIENMKL ELKALAKSRGIKGYSKLKKNEL+
Sbjct: 245 IPP---------KVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELM 274

Query: 301 ELLGS 305
           E+L S
Sbjct: 305 EILRS 274

[Close]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 4.8e-86
Identity = 200/305 (65.57%), Postives = 223/305 (73.11%), Query Frame = 0


Query: 1   MSTWEHELQKPCGPAVNGNKEEPTYIIYVQLVDLMQFGYSKNCIFLEKNQMEAIVFQPRI 60
           MSTWEH+LQK  GP+   +        Y     L QF                 +F+ + 
Sbjct: 5   MSTWEHDLQKLNGPSGKSDGSSSFPASYSN--PLSQFN----------------LFEKKT 64

Query: 61  LNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKN 120
             RF ++++L         DIADVYPSK+I+LSV+NNRPDGN  NRPPRRNS PGKTRK+
Sbjct: 65  HVRFESLLNLA--------DIADVYPSKNIQLSVSNNRPDGNARNRPPRRNSLPGKTRKS 124

Query: 121 EVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESI 180
           E SSRK EA KNEE++K+SK N+QEEIIALFRKIQ SIAKESASS DEES KDEHGA SI
Sbjct: 125 ESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKESASSIDEESHKDEHGATSI 184

Query: 181 LETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTS-PPATDFKLVRPPSKFVKRSP 240
           LETLRE RKQ+KGKTSKK GAK  RSKGTSE KE+HD S PPA DFKLVRPPSKFVKRSP
Sbjct: 185 LETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPPPAADFKLVRPPSKFVKRSP 244

Query: 241 IPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELI 300
           IP          +VDASQAIAESRELK PSIENMKL ELKALAKSRGIKGYSKLKKNEL+
Sbjct: 245 IPP---------KVDASQAIAESRELKFPSIENMKLAELKALAKSRGIKGYSKLKKNELM 274

Query: 301 ELLGS 305
           E+L S
Sbjct: 305 EILRS 274

[Close]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-77
Identity = 180/256 (70.31%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 51  MEAIVFQPRILNRFPNMVSLGRRPTFASKDIADVYPSKSIKLSVTNNRPDGNGGNRPPRR 110
           MEA+VFQ R L RFPN+VS GRRP FA K+IA V  SK I++SVT+N   GN G RPPRR
Sbjct: 1   MEAVVFQSRTL-RFPNLVSFGRRPIFALKEIAAVNSSKGIQVSVTSN-GGGNAGQRPPRR 60

Query: 111 NSAPGKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESASSNDEES 170
           +S PG+TRKNE    + EA    EDLK  K NNQEEIIALFRKIQTSIAK+SA++ DE+S
Sbjct: 61  SSGPGRTRKNE--PNRNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDS 120

Query: 171 CKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFKLVRP 230
            +DE GAESILE+LRESRKQVKG+TSKK G K LR KG SE  E++ TS PA +FKLVRP
Sbjct: 121 HEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS-PAAEFKLVRP 180

Query: 231 PSKFVKRSPIPSP--QRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIK 290
           PSKFVKRSPIPSP  + G  S LR + SQAIAESRE+K PS+ENMKLTELKA+AKSRGIK
Sbjct: 181 PSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIK 240

Query: 291 GYSKLKKNELIELLGS 305
           GYSKLKKNEL+ELL S
Sbjct: 241 GYSKLKKNELLELLRS 248

[Close]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 8.3e-70
Identity = 175/284 (61.62%), Postives = 205/284 (72.18%), Query Frame = 0


Query: 35  MQFGYSKNCIFLEKNQ------------MEAIVFQPRILNRFPNMVSLGRRPTFASKDIA 94
           MQFGYSKNCIF  K+              +  +F      RF ++++L         +IA
Sbjct: 1   MQFGYSKNCIFQGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLA--------EIA 60

Query: 95  DVYPSKSIKLSVTNNRPDGNGGNRPPRRNSAPGKTRKNEVSSRKTEAHKNEEDLKESKYN 154
            V  SK I++SVT+N   GN G RPPRR+S PG+TRKNE    + EA    EDLK  K N
Sbjct: 61  AVNSSKGIQVSVTSN-GGGNAGQRPPRRSSGPGRTRKNE--PNRNEA---AEDLKNPKSN 120

Query: 155 NQEEIIALFRKIQTSIAKESASSNDEESCKDEHGAESILETLRESRKQVKGKTSKKVGAK 214
           NQEEIIALFRKIQTSIAK+SA++ DE+S +DE GAESILE+LRESRKQVKG+TSKK G K
Sbjct: 121 NQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVK 180

Query: 215 ALRSKGTSEGKEIHDTSPPATDFKLVRPPSKFVKRSPIPSP--QRGRGSHLRVDASQAIA 274
            LR KG SE  E++ TS PA +FKLVRPPSKFVKRSPIPSP  + G  S LR + SQAIA
Sbjct: 181 VLRRKGISEEPEMYHTS-PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIA 240

Query: 275 ESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 305
           ESRE+K PS+ENMKLTELKA+AKSRGIKGYSKLKKNEL+ELL S
Sbjct: 241 ESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 269

[Close]

BLAST of CcUC03G049120 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-20
Identity = 75/198 (37.88%), Postives = 107/198 (54.04%), Query Frame = 0


Query: 115 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 174
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 70  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 175 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFKLVR 234
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 189

Query: 235 PPSKFVKRSPIPSPQRGRGSHLRV---DASQAIAESRELKVPSIENMKLTELKALAKSRG 294
           PPS FVKR+P+ S   G    L V   D +      +E K   IE MKL ELK +AK+RG
Sbjct: 190 PPSSFVKRTPLSSSASGPRGKLPVSNSDKALGKLTKKEEKASLIETMKLAELKEVAKNRG 244

Query: 295 IKGYSKLKKNELIELLGS 305
           IKGYSKL+K+EL+EL+ S
Sbjct: 250 IKGYSKLRKSELLELIRS 244

[Close]

BLAST of CcUC03G049120 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-13
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 115 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 174
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 70  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 129

Query: 175 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFKLVR 234
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 130 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 189

Query: 235 PPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKG 294
           PPS FVKR+P+ S   G                              ELK +AK+RGIKG
Sbjct: 190 PPSSFVKRTPLSSSASGP----------------------------RELKEVAKNRGIKG 213

Query: 295 YSKLKKNELIELLGS 305
           YSKL+K+EL+EL+ S
Sbjct: 250 YSKLRKSELLELIRS 213

[Close]

BLAST of CcUC03G049120 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-13
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 115 GKTRKNEVSSRKTEAHKNEEDLKESKYNNQEEIIALFRKIQTSIAKESA-----SSNDEE 174
           G+++K  V  +K    +     K    +NQEEII+L ++IQ+SI+K  +       N +E
Sbjct: 45  GRSKKGCVCCKKPSDRRTSNPSK----SNQEEIISLLKRIQSSISKGESRGVEEEKNSDE 104

Query: 175 SCKDEHGAESILETLRESRKQVKGKTSKKVGAKALRSKGTSEGKEIHDTSPPATDFKLVR 234
           S K++   ++IL+ L +SRK+ +G TS K                     PP    +L R
Sbjct: 105 SSKEKPLTKAILDVLEKSRKKTEGDTSVK-------------------EKPPKRQVELPR 164

Query: 235 PPSKFVKRSPIPSPQRGRGSHLRVDASQAIAESRELKVPSIENMKLTELKALAKSRGIKG 294
           PPS FVKR+P+ S   G                              ELK +AK+RGIKG
Sbjct: 165 PPSSFVKRTPLSSSASGP----------------------------RELKEVAKNRGIKG 188

Query: 295 YSKLKKNELIELLGS 305
           YSKL+K+EL+EL+ S
Sbjct: 225 YSKLRKSELLELIRS 188

[Close]

BLAST of CcUC03G049120 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-07
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 254 DASQAIAESRELKVPSIENMKLTELKALAKSRGIKGYSKLKKNELIELLGS 305
           DA +   E+ E  V  +  +KL EL+ +AKSRG+KG SK+KK EL+ELLGS
Sbjct: 348 DADEDSDEAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:

BLAST of CcUC03G049120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893912.1	2.1e-112	87.60	SAP-like protein BP-73 isoform X3 [Benincasa hispida]	[more]
XP_038893911.1	2.0e-110	82.18	SAP-like protein BP-73 isoform X2 [Benincasa hispida]	[more]
XP_038893910.1	1.1e-108	81.00	SAP-like protein BP-73 isoform X1 [Benincasa hispida]	[more]
KGN65614.1	6.0e-91	77.25	hypothetical protein Csa_019894 [Cucumis sativus]	[more]
XP_008446702.1	1.0e-85	65.57	PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein ...	[more]

BLAST of CcUC03G049120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94K75	8.1e-06	52.94	Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of CcUC03G049120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX66	2.9e-91	77.25	Rho_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G470300 PE=4 ...	[more]
A0A5A7UMB7	4.8e-86	65.57	SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A1S3BFQ9	4.8e-86	65.57	SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1	[more]
A0A6J1CGN3	7.0e-77	70.31	uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CF22	8.3e-70	61.62	uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CcUC03G049120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18740.1	6.0e-20	37.88	Rho termination factor	[more]
AT4G18740.2	1.4e-13	33.33	Rho termination factor	[more]
AT4G18740.3	1.4e-13	33.33	Rho termination factor	[more]
AT1G06190.1	5.8e-07	52.94	Rho termination factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011112	Rho termination factor, N-terminal	SMART	SM00959	Rho_N_2_a	coord: 269..304 e-value: 0.0011 score: 28.3
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 271..300 e-value: 6.4E-9 score: 35.6
None	No IPR available	GENE3D	1.10.720.10		coord: 259..299 e-value: 6.0E-8 score: 34.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..140
None	No IPR available	PANTHER	PTHR34449:SF2	RHO TERMINATION FACTOR	coord: 51..303
None	No IPR available	PANTHER	PTHR34449	RHO TERMINATION FACTOR	coord: 51..303
IPR036269	Rho termination factor, N-terminal domain superfamily	SUPERFAMILY	68912	Rho N-terminal domain-like	coord: 267..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G049120.1	CcUC03G049120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination