CcUC03G048770 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G048770
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr03: 6645198 .. 6645691 (+)
RNA-Seq Expression	CcUC03G048770
Synteny	CcUC03G048770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTGTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCTCGAATTGCCACCGAAATATCTCGACTTGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGGGCCGGCTCAGCCCCGGCGGACCCGACCCGTACCACCATTAGCAACGATCGGATTTGGGGGTGTTCTTTTTTTGGTAAGAAGAAGAATAAACACCCCTGGCCCCGAAAGCACTTCATTCGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGACCGACATCGTATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

mRNA sequence

ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTGTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCTCGAATTGCCACCGAAATATCTCGACTTGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGGGCCGGCTCAGCCCCGGCGGACCCGACCCAATAAACACCCCTGGCCCCGAAAGCACTTCATTCGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGACCGACATCGTATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

Coding sequence (CDS)

ATGGAAGCTCGTAATTTGATTGCTCCAAAACATTCTGAATATGAAGGCAATGCCACAAAGTTTGTAATCCCAACATTCCCCATCAACAAAATCGCCCGATTCTTCGCATTTCGGTTCAACCCGAGTCCGAACCCGATCCAATTAAACAGAGCAGCGACCCGATCTCGAATTGCCACCGAAATATCTCGACTTGGGAATGAATACGCCAAGAAATTTGCCTATAAACCGGGCCGGCTCAGCCCCGGCGGACCCGACCCAATAAACACCCCTGGCCCCGAAAGCACTTCATTCGAAAATTGGGCATTTGATTCGAGAAATGCCGAATCATCAAGATTCGGAGCAACATTTGGATTTATAGCCGTTTCTTGTTGGGTCAATACAATGACCGACATCGTATCAAATCTCAAGAAACAAGCTAAGGTGATGATCCAGCTTTGA

Protein sequence

MEARNLIAPKHSEYEGNATKFVIPTFPINKIARFFAFRFNPSPNPIQLNRAATRSRIATEISRLGNEYAKKFAYKPGRLSPGGPDPINTPGPESTSFENWAFDSRNAESSRFGATFGFIAVSCWVNTMTDIVSNLKKQAKVMIQL

Homology

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BLAST of CcUC03G048770 vs. NCBI nr
Match: KAG6583968.1 (hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1  MEARNLIAPKHSEYEGNATKFVIPTFPINKIARFFAFRFNPSPNPIQLNRAATRSRIATE 60
          ++AR LI PK+S       KF IP   I +IARFFA   NPS +  + N A T  R+ATE
Sbjct: 20 LQARTLIGPKNS-------KFTIPISHITRIARFFAIPINPSQSSTKSNPALT--RMATE 79

Query: 61 ISRLGNEYAKKFAYKPGRLSPGGPDP 87
          ISRLGNE+AKKF YKP RLSPGGPDP
Sbjct: 80 ISRLGNEHAKKFGYKPTRLSPGGPDP 96

The following BLAST results are available for this feature:

BLAST of CcUC03G048770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583968.1	4.4e-15	59.30	hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC03G048770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC03G048770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC03G048770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G048770.1	CcUC03G048770.1	mRNA