CcUC03G047790 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G047790
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNase H domain-containing protein
Location	CicolChr03: 5544635 .. 5545258 (+)
RNA-Seq Expression	CcUC03G047790
Synteny	CcUC03G047790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCACTAAAAAACATTCTAAAATGTCCCAAATACCAAATTATCCGATCAAAATCATTGTTAGCAAGGCAATGGCACAAACAACCGATTCCAGTGACATGGACGAAGCCCGAAATTGGATGGACAAAGCTGAATTTCGATGGGTCTTCAAAAGGGAAAAAACCACCAGGACGGGCTAGCATTGGGGGCGTTCTAAGAGACCACGAGGCCCAGTTTTTGCTAGGATATGCGGAGGCCATAGGCCGAGCCAATAGCACCATGGCTGAACTCACAGCACTGACCAAAGGCTTGGAATTGGTGCTTGAAAATGGGTGGAAGGACGTTTGGGTTGAAGGGGATGCGAAGGGATTGGTTGAAATTATAGTTGAAAATAAAGAGGTTAAATGTGTGGAAGCTCGAAGTCATTTTAGGTACATAAAATCTTTGATACTTGATTTGGATAATTGTAAGGTTAGTCATATTTATAGGGAAGGTAATAGAGTTGCTAATACCTTTGCTTCCATTGGCCATCGTTATAAGAAGCTTGAAATTTGGAGGCAAATTCCTCCATTGGAGATTTTGGATATGATGCGTCAAGATGCTGAGGGAAAGATTACTTTTAGGAAAATAAATACGAGGTAG

mRNA sequence

ATGTTTTCACTAAAAAACATTCTAAAATGTCCCAAATACCAAATTATCCGATCAAAATCATTGTTAGCAAGGCAATGGCACAAACAACCGATTCCAGTGACATGGACGAAGCCCGAAATTGGATGGACAAAGCTGAATTTCGATGGGTCTTCAAAAGGGAAAAAACCACCAGGACGGGCTAGCATTGGGGGCGTTCTAAGAGACCACGAGGCCCAGTTTTTGCTAGGATATGCGGAGGCCATAGGCCGAGCCAATAGCACCATGGCTGAACTCACAGCACTGACCAAAGGCTTGGAATTGGTGCTTGAAAATGGGTGGAAGGACGTTTGGGTTGAAGGGGATGCGAAGGGATTGGTTGAAATTATAGTTGAAAATAAAGAGGTTAAATGTGTGGAAGCTCGAAGTCATTTTAGGTACATAAAATCTTTGATACTTGATTTGGATAATTGTAAGGTTAGTCATATTTATAGGGAAGGTAATAGAGTTGCTAATACCTTTGCTTCCATTGGCCATCGTTATAAGAAGCTTGAAATTTGGAGGCAAATTCCTCCATTGGAGATTTTGGATATGATGCGTCAAGATGCTGAGGGAAAGATTACTTTTAGGAAAATAAATACGAGGTAG

Coding sequence (CDS)

ATGTTTTCACTAAAAAACATTCTAAAATGTCCCAAATACCAAATTATCCGATCAAAATCATTGTTAGCAAGGCAATGGCACAAACAACCGATTCCAGTGACATGGACGAAGCCCGAAATTGGATGGACAAAGCTGAATTTCGATGGGTCTTCAAAAGGGAAAAAACCACCAGGACGGGCTAGCATTGGGGGCGTTCTAAGAGACCACGAGGCCCAGTTTTTGCTAGGATATGCGGAGGCCATAGGCCGAGCCAATAGCACCATGGCTGAACTCACAGCACTGACCAAAGGCTTGGAATTGGTGCTTGAAAATGGGTGGAAGGACGTTTGGGTTGAAGGGGATGCGAAGGGATTGGTTGAAATTATAGTTGAAAATAAAGAGGTTAAATGTGTGGAAGCTCGAAGTCATTTTAGGTACATAAAATCTTTGATACTTGATTTGGATAATTGTAAGGTTAGTCATATTTATAGGGAAGGTAATAGAGTTGCTAATACCTTTGCTTCCATTGGCCATCGTTATAAGAAGCTTGAAATTTGGAGGCAAATTCCTCCATTGGAGATTTTGGATATGATGCGTCAAGATGCTGAGGGAAAGATTACTTTTAGGAAAATAAATACGAGGTAG

Protein sequence

MFSLKNILKCPKYQIIRSKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWRQIPPLEILDMMRQDAEGKITFRKINTR

Homology

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BLAST of CcUC03G047790 vs. NCBI nr
Match: KAG6584039.1 (putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 3.0e-94
Identity = 171/208 (82.21%), Postives = 187/208 (89.90%), Query Frame = 0


Query: 1   MFSLKNILKCPKYQIIRSKS-LLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGR 60
           MFSL  +LKCP YQI R ++ LLARQ HKQPIPV W +P+IGWTKLNFDGSS+GK  PGR
Sbjct: 1   MFSLNTMLKCPNYQINRIRALLLARQCHKQPIPVAWKRPDIGWTKLNFDGSSRGKMSPGR 60

Query: 61  ASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGVLRDH+AQFLLGYAE IGRANST+AELTAL+KGLELVLENGWKDVW+EGDAKGL+
Sbjct: 61  ASIGGVLRDHQAQFLLGYAEPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLI 120

Query: 121 EIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIW 180
           EIIV  K+ KCVEARS FRYI SLILDL+NCKVSHIYREGNRVAN FASIGHRYKKLE+W
Sbjct: 121 EIIVGKKKAKCVEARSQFRYINSLILDLNNCKVSHIYREGNRVANRFASIGHRYKKLEVW 180

Query: 181 RQIPPLEILDMMRQDAEGKITFRKINTR 208
           R IPPLE LDMMR+DAEGKI+FR INTR
Sbjct: 181 RDIPPLETLDMMREDAEGKISFRNINTR 208

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BLAST of CcUC03G047790 vs. NCBI nr
Match: KAA0056936.1 (putative ribonuclease H protein [Cucumis melo var. makuwa] >TYK26364.1 putative ribonuclease H protein [Cucumis melo var. makuwa])

HSP 1 Score: 344.4 bits (882), Expect = 7.0e-91
Identity = 171/201 (85.07%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 6   NILKCPKYQIIRSKSLL-ARQWHKQ--PIPVTWTKPEIGWTKLNFDGSSKGKKPPGRASI 65
           NILK   YQ IRSKSLL ARQ HKQ  PIPV W +PEIGWTKLNFDGSSKG K PG ASI
Sbjct: 3   NILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASI 62

Query: 66  GGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEII 125
           GGVLRDH+AQFLLGYAEAIGRANS MAELTALTKGLELVLENGWKDVWVEGD KGLVEI+
Sbjct: 63  GGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEIL 122

Query: 126 VENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWRQI 185
            +NKEVKCVE RS+FRYIKSLILDLDNCKVSHIYREGN+VA+ FASIGHRYKKLEIWR++
Sbjct: 123 ADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWREL 182

Query: 186 PPLEILDMMRQDAEGKITFRK 204
           PPLE LDMMR DAEGKITFR+
Sbjct: 183 PPLETLDMMRHDAEGKITFRR 203

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BLAST of CcUC03G047790 vs. NCBI nr
Match: XP_038895327.1 (uncharacterized protein LOC120083578 [Benincasa hispida])

HSP 1 Score: 327.0 bits (837), Expect = 1.2e-85
Identity = 166/207 (80.19%), Postives = 171/207 (82.61%), Query Frame = 0


Query: 1   MFSLKNILKCPKYQIIRSKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGRA 60
           MF+LK ILKC  YQIIRS   LARQWHKQPIPV WT+PEIGWTKLNFDGSSKGKK PGRA
Sbjct: 1   MFTLKTILKCSNYQIIRSS--LARQWHKQPIPVAWTRPEIGWTKLNFDGSSKGKKTPGRA 60

Query: 61  SIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVE 120
           SIGGVLRDH+AQFLLGYAE IGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVE
Sbjct: 61  SIGGVLRDHDAQFLLGYAEPIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVE 120

Query: 121 IIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWR 180
           IIVENKEVKCVEARSHFR                           FASIGHRYKKLEIWR
Sbjct: 121 IIVENKEVKCVEARSHFR---------------------------FASIGHRYKKLEIWR 178

Query: 181 QIPPLEILDMMRQDAEGKITFRKINTR 208
           +IPPLEILDMMRQDAEGKITFR+INTR
Sbjct: 181 EIPPLEILDMMRQDAEGKITFRRINTR 178

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BLAST of CcUC03G047790 vs. NCBI nr
Match: KAE8652698.1 (hypothetical protein Csa_013405 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 7.5e-85
Identity = 160/202 (79.21%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 6   NILKCPKYQIIRSKSLL--ARQWHKQ--PIPVTWTKPEIGWTKLNFDGSSKGKKPPGRAS 65
           NI K   YQII SKSLL  AR+ HK+  PIPV WT+PE GWTKLNFDGSSKG+  PG AS
Sbjct: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62

Query: 66  IGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEI 125
           IGGVLRDH+AQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGDAKGLVEI
Sbjct: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122

Query: 126 IVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWRQ 185
           + EN+EVKC+EARS+ R+IKSL+LD DNCKVSHIYREGN+VA+ FASIGHR KKLEIWR+
Sbjct: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182

Query: 186 IPPLEILDMMRQDAEGKITFRK 204
           +PPLE LDMMR DAEGKITFR+
Sbjct: 183 LPPLETLDMMRHDAEGKITFRR 204

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BLAST of CcUC03G047790 vs. NCBI nr
Match: KAG5516709.1 (hypothetical protein RHGRI_037449 [Rhododendron griersonianum])

HSP 1 Score: 260.0 bits (663), Expect = 1.7e-65
Identity = 120/203 (59.11%), Postives = 152/203 (74.88%), Query Frame = 0


Query: 1   MFSLKNILKCPKYQIIRSKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGRA 60
           M ++ NI++C K      +  + R WHK+PI V W KPEIGWTKLNFDGS KGK   G+A
Sbjct: 1   MLTIPNIMRCQKLTQSPFRLAIIRNWHKEPIQVAWEKPEIGWTKLNFDGSCKGK--TGKA 60

Query: 61  SIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVE 120
           SIGGV R+H+A+FLLGYAEAIGR  ST+AEL AL +GLELVLENGW+DVW+EGD+K LVE
Sbjct: 61  SIGGVFRNHKAEFLLGYAEAIGRTTSTIAELAALRRGLELVLENGWEDVWLEGDSKALVE 120

Query: 121 IIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWR 180
           II   K VKC EA+ H  +I  +I +L+NC +SH+YREGN+ A+ FA +GH+ KK ++WR
Sbjct: 121 IIARRKRVKCAEAQGHISHINLMIPELNNCMLSHVYREGNKAADKFAQMGHQMKKPQVWR 180

Query: 181 QIPPLEILDMMRQDAEGKITFRK 204
             PP ++L +M  DAEGKI  RK
Sbjct: 181 HNPPHQVLRIMHDDAEGKIFLRK 201

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BLAST of CcUC03G047790 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 50/176 (28.41%), Postives = 84/176 (47.73%), Query Frame = 0


Query: 33  VTWTKPEIGWTKLNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIGRANSTMAELT 92
           + W  P +GW K+N DG+S+G   PG AS GGVLRD    +  G++  IGR ++  AEL 
Sbjct: 450 IGWVSPCVGWVKVNTDGASRGN--PGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELW 509

Query: 93  ALTKGLELVLENGWKDVWVEGDAKGLVEI----IVENKEVKCVEARSHFRYIKSLILDLD 152
            +  GL    E     V +E D++ +V      I ++  +  +    H    K  ++   
Sbjct: 510 GVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLV--- 569

Query: 153 NCKVSHIYREGNRVANTFASIGHRYKKLEIWRQIPPLEILDMMRQDAEGKITFRKI 205
             ++ H+YRE NR+A+  A+             + P  +  ++R+D  G    R++
Sbjct: 570 --RIVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRRV 618

[Close]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL
Match: A0A5D3DS33 (Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00240 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.4e-91
Identity = 171/201 (85.07%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 6   NILKCPKYQIIRSKSLL-ARQWHKQ--PIPVTWTKPEIGWTKLNFDGSSKGKKPPGRASI 65
           NILK   YQ IRSKSLL ARQ HKQ  PIPV W +PEIGWTKLNFDGSSKG K PG ASI
Sbjct: 3   NILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASI 62

Query: 66  GGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEII 125
           GGVLRDH+AQFLLGYAEAIGRANS MAELTALTKGLELVLENGWKDVWVEGD KGLVEI+
Sbjct: 63  GGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEIL 122

Query: 126 VENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWRQI 185
            +NKEVKCVE RS+FRYIKSLILDLDNCKVSHIYREGN+VA+ FASIGHRYKKLEIWR++
Sbjct: 123 ADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWREL 182

Query: 186 PPLEILDMMRQDAEGKITFRK 204
           PPLE LDMMR DAEGKITFR+
Sbjct: 183 PPLETLDMMRHDAEGKITFRR 203

[Close]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL
Match: A0A0A0LUF5 (RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071820 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 160/202 (79.21%), Postives = 178/202 (88.12%), Query Frame = 0


Query: 6   NILKCPKYQIIRSKSLL--ARQWHKQ--PIPVTWTKPEIGWTKLNFDGSSKGKKPPGRAS 65
           NI K   YQII SKSLL  AR+ HK+  PIPV WT+PE GWTKLNFDGSSKG+  PG AS
Sbjct: 3   NIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVAS 62

Query: 66  IGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEI 125
           IGGVLRDH+AQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGDAKGLVEI
Sbjct: 63  IGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLVEI 122

Query: 126 IVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIWRQ 185
           + EN+EVKC+EARS+ R+IKSL+LD DNCKVSHIYREGN+VA+ FASIGHR KKLEIWR+
Sbjct: 123 LAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIWRE 182

Query: 186 IPPLEILDMMRQDAEGKITFRK 204
           +PPLE LDMMR DAEGKITFR+
Sbjct: 183 LPPLETLDMMRHDAEGKITFRR 204

[Close]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL
Match: A0A2N9IF10 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50940 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-65
Identity = 122/204 (59.80%), Postives = 156/204 (76.47%), Query Frame = 0


Query: 1   MFSLKNILKCPKYQIIR-SKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGR 60
           M S+ NIL+C    I++ S     R WHK+ IPVTW KPEIGWTKLNFDGSSKG+    +
Sbjct: 1   MLSITNILRCQSRPILQNSVRFFLRNWHKEAIPVTWEKPEIGWTKLNFDGSSKGR--ANK 60

Query: 61  ASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLV 120
           ASIGGV R+H+A+FLLGYAE+IG+ANST+AEL AL +GLELVLENGW DVW+EGDAK L+
Sbjct: 61  ASIGGVFRNHKAEFLLGYAESIGKANSTIAELAALRRGLELVLENGWNDVWLEGDAKTLI 120

Query: 121 EIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIW 180
           +IIV+ + VKC+E + H   I  ++L+LDN  V+H+YREGNR A+ FA IGH  K   IW
Sbjct: 121 DIIVQGRRVKCLEVQRHISDINLILLELDNFHVTHVYREGNRAADKFAQIGHHMKNPGIW 180

Query: 181 RQIPPLEILDMMRQDAEGKITFRK 204
           R+ PP E+L +M++DA+GKI  R+
Sbjct: 181 REDPPDELLAIMKEDAQGKIVLRR 202

[Close]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL
Match: A0A7N2LU47 (RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 6.0e-64
Identity = 124/204 (60.78%), Postives = 154/204 (75.49%), Query Frame = 0


Query: 1   MFSLKNILKC--PKYQIIRSKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPG 60
           M S+ NIL+C  P  + I S  +L R WHK+ IPV W KPE GWTKLNFDGSSKGK    
Sbjct: 1   MLSITNILRCQIPITKQI-SVRILIRNWHKEAIPVVWEKPEKGWTKLNFDGSSKGK--AN 60

Query: 61  RASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGL 120
           +ASIGGV R+H+A+F+LGYAE+IGRANST+AEL AL +GLELVLENGW DVW+EGDAK L
Sbjct: 61  KASIGGVFRNHKAEFILGYAESIGRANSTIAELAALRRGLELVLENGWNDVWLEGDAKTL 120

Query: 121 VEIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEI 180
           ++II + ++VK  E + H R I  +IL+LDNC V+H+YREGNR A+ FA IGH  +K  I
Sbjct: 121 IDIIAKRRQVKSSEVQRHIRDINLIILELDNCLVTHVYREGNRAADKFAQIGHHMEKPGI 180

Query: 181 WRQIPPLEILDMMRQDAEGKITFR 203
           WR +PP E+L +M+ DAEGK   R
Sbjct: 181 WRNVPPDELLAIMKDDAEGKTVLR 201

[Close]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL
Match: A0A6A4P089 (Putative ribonuclease H OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0059991 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.7e-63
Identity = 122/204 (59.80%), Postives = 152/204 (74.51%), Query Frame = 0


Query: 1   MFSLKNILKCPKYQIIRSKSLLARQWHKQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGRA 60
           M  L NIL+C K  +    S L R  HK+PIPV W KP IGWTKLNFDGS KGK   G+A
Sbjct: 1   MLDLINILRCQKL-VHSPVSQLIRYLHKEPIPVAWKKPRIGWTKLNFDGSCKGKS--GKA 60

Query: 61  SIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLENGW-KDVWVEGDAKGLV 120
           SIGGV+R+H A+FLLGYAE+IG+ANST+AEL AL +GLELVLENGW  D+W EGDAK LV
Sbjct: 61  SIGGVVRNHNAEFLLGYAESIGQANSTIAELLALRRGLELVLENGWNNDIWFEGDAKTLV 120

Query: 121 EIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVANTFASIGHRYKKLEIW 180
           +IIV+ ++V+C+E R H  +I S++   +NC VSHIYREGNR A+ FA +GH   +  IW
Sbjct: 121 QIIVQKRQVRCMEVRRHINHINSILSGFNNCIVSHIYREGNRAADKFAQMGHHLNEPTIW 180

Query: 181 RQIPPLEILDMMRQDAEGKITFRK 204
             IPP E+L +M+QDA+GKI  R+
Sbjct: 181 THIPPHEVLAIMQQDAQGKIALRR 201

[Close]

BLAST of CcUC03G047790 vs. TAIR 10
Match: AT1G04625.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-11
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = 0


Query: 28  KQPIPVTWTKPEIGWTKLNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIG--RAN 87
           ++P    WT P IGWTK N+DG+     P   +  G +LRD    F LG A AIG    N
Sbjct: 75  QEPTANLWTTPPIGWTKCNYDGTYHSNAP---SKAGWLLRDDRGTF-LGAAHAIGSITTN 134

Query: 88  STMAELTALTKGLELVLENGWKDVWVEGDAKGLVEIIVENKEVKCVEARSHFRYIKSLIL 147
              +EL AL   ++     G++ ++ EGD K + EI+  N         +  R I +   
Sbjct: 135 PMESELQALVMAMQHCWSRGYRKIYFEGDNKEVSEIV--NGRSSNFAVFNWIRDISAWRS 194

Query: 148 DLDNCKVSHIYREGNRVANTFA 168
             + CK +   R  N  A+  A
Sbjct: 195 KFEECKFTWTRRFSNMAADALA 210

[Close]

BLAST of CcUC03G047790 vs. TAIR 10
Match: AT2G46460.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10
Identity = 37/134 (27.61%), Postives = 67/134 (50.00%), Query Frame = 0


Query: 35  WTKPEIGWTKLNFDGSSKGKKPPGRASIGGVLRDHEAQFL-LGYAEAIGRANSTMAELTA 94
           WT+P  GW K N+DGS   + P   +  G ++RD   QF+  G A     +N+  +E  A
Sbjct: 3   WTRPPHGWKKCNYDGSYNREMP---SKAGWIIRDESGQFVSAGQATGNHTSNALESEFQA 62

Query: 95  LTKGLELVLENGWKDVWVEGDAKGLVEIIVENKEVKCVEARSHFRYIKSLILDLDNCKVS 154
           L   ++    +G + +W EGD + ++EI+  N+     +  +  R +++       C+ +
Sbjct: 63  LLITMQSCWSHGHRKIWFEGDNREVMEIL--NRRKSRFDIFNWIRDVQAWKQRFQECRFT 122

Query: 155 HIYREGNRVANTFA 168
            I R+ N+ A+  A
Sbjct: 123 WINRKQNKPADILA 131

[Close]

BLAST of CcUC03G047790 vs. TAIR 10
Match: AT5G42905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-10
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 33  VTWTKPEIGWTKLNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIGRANSTMAELT 92
           + W  P +GW K+N DG+S+G   PG AS GGVLRD E  +  G++  IGR ++  AEL 
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGN--PGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELW 197

Query: 93  ALTKGLELVLENGWKDVWVEGDAKGLV 120
            +  GL    E     V +E D++ +V
Sbjct: 198 GVYYGLYFAWEKKVPRVELEVDSEAIV 222

[Close]

BLAST of CcUC03G047790 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-09
Identity = 39/124 (31.45%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 45  LNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLEN 104
           + FDG+SKG   PG+A  G VLR  +   L    E +G A + +AE  AL  GL   L+ 
Sbjct: 157 IEFDGASKGN--PGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDK 216

Query: 105 GWKDVWVEGDAKGLVEIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVAN 164
           G+K+V V GD+  +   +    +    +     +  K L+       + HI RE N  A+
Sbjct: 217 GFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEAD 276

Query: 165 TFAS 169
             A+
Sbjct: 277 KQAN 278

[Close]

BLAST of CcUC03G047790 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-09
Identity = 39/124 (31.45%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 45  LNFDGSSKGKKPPGRASIGGVLRDHEAQFLLGYAEAIGRANSTMAELTALTKGLELVLEN 104
           + FDG+SKG   PG+A  G VLR  +   L    E +G A + +AE  AL  GL   L+ 
Sbjct: 157 IEFDGASKGN--PGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDK 216

Query: 105 GWKDVWVEGDAKGLVEIIVENKEVKCVEARSHFRYIKSLILDLDNCKVSHIYREGNRVAN 164
           G+K+V V GD+  +   +    +    +     +  K L+       + HI RE N  A+
Sbjct: 217 GFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEAD 276

Query: 165 TFAS 169
             A+
Sbjct: 277 KQAN 278

The following BLAST results are available for this feature:

BLAST of CcUC03G047790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584039.1	3.0e-94	82.21	putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0056936.1	7.0e-91	85.07	putative ribonuclease H protein [Cucumis melo var. makuwa] >TYK26364.1 putative ...	[more]
XP_038895327.1	1.2e-85	80.19	uncharacterized protein LOC120083578 [Benincasa hispida]	[more]
KAE8652698.1	7.5e-85	79.21	hypothetical protein Csa_013405 [Cucumis sativus]	[more]
KAG5516709.1	1.7e-65	59.11	hypothetical protein RHGRI_037449 [Rhododendron griersonianum]	[more]

BLAST of CcUC03G047790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.5e-11	28.41	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of CcUC03G047790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS33	3.4e-91	85.07	Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0LUF5	3.6e-85	79.21	RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071820 PE=...	[more]
A0A2N9IF10	1.9e-65	59.80	RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50940 ...	[more]
A0A7N2LU47	6.0e-64	60.78	RNase H domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6A4P089	8.7e-63	59.80	Putative ribonuclease H OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0059991 PE=4 SV=1	[more]

BLAST of CcUC03G047790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04625.1	4.5e-11	31.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G46460.1	3.8e-10	27.61	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G42905.1	5.0e-10	40.23	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.1	4.2e-09	31.45	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.2	4.2e-09	31.45	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 42..171 e-value: 4.7E-22 score: 80.5
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 46..168 e-value: 1.1E-29 score: 102.7
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 39..172 score: 9.646213
None	No IPR available	PANTHER	PTHR47723:SF3	OS06G0683500 PROTEIN	coord: 19..198
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 19..198
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 45..163 e-value: 1.75301E-32 score: 112.022
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 40..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G047790.1	CcUC03G047790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity