CcUC03G045830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G045830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionNuclear speckle splicing regulatory protein like
LocationCicolChr03: 3863805 .. 3864020 (-)
RNA-Seq ExpressionCcUC03G045830
SyntenyCcUC03G045830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGGGAAGCAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

mRNA sequence

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGGGAAGCAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

Coding sequence (CDS)

ATGGTGTCTAAAGTGGAAGAAACACTGAGAAGGAAGCACCAGCAAGTTCAGCCGCCGCAGGCGGCGGCGACGGGGAAGCAAATCCAGTGCAATAAAGCCAAGTATCCGAAGTTCAAGAGAAGTAGCTCCGATGTTGAAGAAGATGGCGCCTCTTCCGCCATGCTTTTGCTTGCTTGCATTGCTTTTGCCCCCAATTTTAGTTCCATCGCCGACTGA

Protein sequence

MVSKVEETLRRKHQQVQPPQAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACIAFAPNFSSIAD
Homology
BLAST of CcUC03G045830 vs. NCBI nr
Match: KAG6584135.1 (hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019725.1 hypothetical protein SDJN02_18688, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQ---AAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEETLR KHQQVQPPQ   AAAT KQIQCNKAKYPKFKRS S+VEEDGASSAMLLL
Sbjct: 1  MVSKVEETLRMKHQQVQPPQAAEAAATAKQIQCNKAKYPKFKRSCSNVEEDGASSAMLLL 60

Query: 61 ACIAFAPNFSSI 70
          ACIAFAP+FS +
Sbjct: 61 ACIAFAPDFSPV 72

BLAST of CcUC03G045830 vs. NCBI nr
Match: KGN64384.1 (hypothetical protein Csa_013100 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAATGKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AAAT KQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

BLAST of CcUC03G045830 vs. NCBI nr
Match: KAG7012298.1 (hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 54/72 (75.00%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQAA--ATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE LRRK QQVQ P AA  A  KQIQ NKAKYPKFKRSSSDV +DGASSA+LLLA
Sbjct: 1  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLA 60

Query: 61 CIAFAPNFSSIA 71
          CIAF+P  S ++
Sbjct: 61 CIAFSPASSPVS 72

BLAST of CcUC03G045830 vs. NCBI nr
Match: GFZ03822.1 (hypothetical protein Acr_16g0004460 [Actinidia rufa])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE ++++ QQ Q  Q     KQ+QCNK K  KFKRSSS++EEDGASSA+LLLACI
Sbjct: 1  MVSKVEEAMKKRQQQEQHQQQ----KQMQCNKGKASKFKRSSSNLEEDGASSAILLLACI 60

Query: 61 AFAPN 66
          AFAPN
Sbjct: 61 AFAPN 61

BLAST of CcUC03G045830 vs. NCBI nr
Match: KAG2676094.1 (hypothetical protein I3760_12G035800 [Carya illinoinensis] >KAG6633270.1 hypothetical protein CIPAW_12G036300 [Carya illinoinensis] >KAG6683880.1 hypothetical protein I3842_12G034800 [Carya illinoinensis] >KAG7951991.1 hypothetical protein I3843_12G035700 [Carya illinoinensis])

HSP 1 Score: 77.0 bits (188), Expect = 7.2e-11
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQ-VQPPQAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLAC 60
          MVSKVEE+++ K QQ  QP       KQ+QCNK K  KFKRSSS++EEDGASSA+LLLAC
Sbjct: 1  MVSKVEESMKGKQQQPQQPSHQQQLQKQMQCNKGKASKFKRSSSNLEEDGASSAILLLAC 60

Query: 61 IAFAPNFS 68
          IA AP+++
Sbjct: 61 IACAPSYA 68

BLAST of CcUC03G045830 vs. ExPASy TrEMBL
Match: A0A0A0LTS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-20
Identity = 59/70 (84.29%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQ-------AAATGKQIQCNKAKYPKFKRSSSDVEEDGASSA 60
          MVSKVEETLRRK+QQV PPQ       AAAT KQIQCNKAKYPKFKRSSS+VEEDGASSA
Sbjct: 1  MVSKVEETLRRKYQQVHPPQTAVAAVAAAATAKQIQCNKAKYPKFKRSSSNVEEDGASSA 60

Query: 61 MLLLACIAFA 64
          MLLLACIAFA
Sbjct: 61 MLLLACIAFA 70

BLAST of CcUC03G045830 vs. ExPASy TrEMBL
Match: A0A7J0FYN8 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_16g0004460 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPPQAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLACI 60
          MVSKVEE ++++ QQ Q  Q     KQ+QCNK K  KFKRSSS++EEDGASSA+LLLACI
Sbjct: 1  MVSKVEEAMKKRQQQEQHQQQ----KQMQCNKGKASKFKRSSSNLEEDGASSAILLLACI 60

Query: 61 AFAPN 66
          AFAPN
Sbjct: 61 AFAPN 61

BLAST of CcUC03G045830 vs. ExPASy TrEMBL
Match: A0A4D6KYW9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1293 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.7e-11
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQ--PPQAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLLA 60
          MVSKVEE ++RK Q  Q    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L LA
Sbjct: 1  MVSKVEEAMKRKKQMQQEGQNQQQQVQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFLA 60

Query: 61 CIAFAPNFS 68
          CIA AP+F+
Sbjct: 61 CIACAPSFA 69

BLAST of CcUC03G045830 vs. ExPASy TrEMBL
Match: I1K083 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPP---QAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

BLAST of CcUC03G045830 vs. ExPASy TrEMBL
Match: A0A445KJ74 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 1  MVSKVEETLRRKHQQVQPP---QAAATGKQIQCNKAKYPKFKRSSSDVEEDGASSAMLLL 60
          MVSKVEE ++R ++Q+QP    Q     KQIQCNK K  KFKRSSS++EEDGASSA+L L
Sbjct: 1  MVSKVEEAMKR-NKQMQPQAQNQQQQLQKQIQCNKGKAGKFKRSSSNLEEDGASSAILFL 60

Query: 61 ACIAFAPNFS 68
          ACIA+AP+++
Sbjct: 61 ACIAYAPSYA 69

BLAST of CcUC03G045830 vs. TAIR 10
Match: AT5G50335.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 3.7e-05
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 30 CNKAKYPKFKRSSSDVEEDGASSAMLLLACIA 62
          CNK K  +FKRS+S+++ DGASSA+ LLACIA
Sbjct: 35 CNKEKSCRFKRSTSNLDNDGASSAIFLLACIA 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584135.12.4e-2286.11hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN64384.11.1e-1984.29hypothetical protein Csa_013100 [Cucumis sativus][more]
KAG7012298.12.5e-1675.00hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyro... [more]
GFZ03822.11.1e-1167.69hypothetical protein Acr_16g0004460 [Actinidia rufa][more]
KAG2676094.17.2e-1163.24hypothetical protein I3760_12G035800 [Carya illinoinensis] >KAG6633270.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTS05.3e-2084.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050230 PE=4 SV=1[more]
A0A7J0FYN85.4e-1267.69Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_16g0004460 PE=4 SV=1[more]
A0A4D6KYW97.7e-1163.77Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1293 PE=4 SV=1[more]
I1K0831.0e-1061.43Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_05G045400 PE=4 SV=1[more]
A0A445KJ741.0e-1061.43Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_011276 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G50335.13.7e-0565.63unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR38398EXPRESSED PROTEINcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G045830.1CcUC03G045830.1mRNA