CcUC03G044440 (gene) Watermelon (PI 537277) v1

BLAST of CcUC03G044440 vs. NCBI nr
Match: XP_038894318.1 (DNA-directed RNA polymerase III subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 2634.4 bits (6827), Expect = 0.0e+00
Identity = 1334/1452 (91.87%), Postives = 1352/1452 (93.11%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MN+AQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID
Sbjct: 1    MNRAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKC TCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCTTCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLYKDFLRK+RNPKLE LRK DLVKKIIKKC++LT+GNKS KCSRCGYLNGSV
Sbjct: 121  SRILLEEKLYKDFLRKIRNPKLEPLRKSDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS
Sbjct: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEKLIVT+VPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK
Sbjct: 241  DRPEKLIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARM+RHLD
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMVRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAL+KPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YSVLLRDYKAHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDG+KILSPSEFSKTVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGNKILSPSEFSKTVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWG-TLLADNESDVGKSTIGSSDNDDIVIR 1080
            +DATPECGCSPAFIGSLK FLNKYVEAQKKSW  TLLADNE D+GK  IGSSDND+I+IR
Sbjct: 1021 HDATPECGCSPAFIGSLKTFLNKYVEAQKKSWSMTLLADNELDIGKRIIGSSDNDNIMIR 1080

Query: 1081 NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1140
            NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA
Sbjct: 1081 NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1140

Query: 1141 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKC 1200
            GVASMNVTLGVPRIKEIINGAKRISTPIVTAAL  DDNVNIARMVKARIEKTNLGQIAKC
Sbjct: 1141 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKC 1200

Query: 1201 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRV 1260
            IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRV
Sbjct: 1201 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRV 1260

Query: 1261 LPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQ 1320
            LPQD DRSKLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQ
Sbjct: 1261 LPQDTDRSKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQ 1320

Query: 1321 AVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDL 1380
            AVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDL
Sbjct: 1321 AVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDL 1380

Query: 1381 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPM 1436
            MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPM
Sbjct: 1381 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPM 1385

BLAST of CcUC03G044440 vs. NCBI nr
Match: XP_004148776.1 (DNA-directed RNA polymerase III subunit 1 isoform X1 [Cucumis sativus] >KAE8652732.1 hypothetical protein Csa_013764 [Cucumis sativus])

HSP 1 Score: 2612.8 bits (6771), Expect = 0.0e+00
Identity = 1317/1451 (90.76%), Postives = 1351/1451 (93.11%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MN+AQ EGLVFTKQPYIEDVGPRKIKSMQFTTFSG+EISK+AEVQVYKGLYYDTTRKPID
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKCATCHANFGDCPGHYGY++LALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKL+KDFLRKMRNPKLEALRK DLVKKIIKKC++LT+GNKS +CSRCGYLNGSV
Sbjct: 121  SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYR+RSKDAGVVSEDLRAPYNVSNDILNPFRVL LF+RMSDEDCELLFLS
Sbjct: 181  KKAVSMLGILHYRARSKDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            +RPEKLI+T+V VPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPF+MQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPIHMARILTYPERVT HNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAL+KPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YSVLLRDYKAHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGDQL+K+KQTTILEGYRD
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLE+KITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP+DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DA+PECGCSPAF+GSLKIFLNKYVEAQKKSWGTLLADNES V KS I SSDND+IVIRN
Sbjct: 1021 DDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
            KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAKRISTPIVTAAL  DDNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQDADR+KLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. NCBI nr
Match: XP_008465290.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit 1 [Cucumis melo])

HSP 1 Score: 2610.1 bits (6764), Expect = 0.0e+00
Identity = 1315/1451 (90.63%), Postives = 1349/1451 (92.97%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MN+AQ EGLVFTKQPYIEDVGPRKIKSMQFTTFSG+EISK+AEVQVYKGLYYDTTRKPID
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGY++L+LPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKC++LT+GNKS KCSRCGYLNGSV
Sbjct: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYR+RSKDAGVVSEDLRAPYNVSNDILNPFRVL LF+RMSDEDCELLFLS
Sbjct: 181  KKAVSMLGILHYRARSKDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEKLI+T+V VPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDL+DLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLIDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YSVLLRDYKAHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGDQL+K+ + TILEGYRD
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKNKXTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI+YDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIYYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP+DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DA+PECGCSPAFIGSLKIFLNKY+EAQKKSW TLLADNE+ V KS I SSDND+IVIRN
Sbjct: 1021 DDASPECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLADNETAVDKSIISSSDNDNIVIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
             VVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 NVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAKRISTPIVTAAL  DDNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQDADR+KLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. NCBI nr
Match: XP_022964790.1 (DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata])

HSP 1 Score: 2609.7 bits (6763), Expect = 0.0e+00
Identity = 1320/1451 (90.97%), Postives = 1346/1451 (92.76%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MNKAQ EGLVFTKQPYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPID
Sbjct: 1    MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLY DFLRKMRNPKLE LRK +L KKIIKKCT+LTS NKSMKCS CGYLNGSV
Sbjct: 121  SRILLEEKLYNDFLRKMRNPKLEPLRKSELAKKIIKKCTALTSNNKSMKCSGCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSD+DCELLFLS
Sbjct: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDKDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEK IVT+VPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKFIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQLK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPL+GFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLSGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPI MARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPILMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSL+ISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLVISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCP+DGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPHDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YS+LLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+QLIKQKQTTILEGYRD
Sbjct: 661  YSILLRDYKPHAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGEQLIKQKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQMIACVGQQSVGGRRAPDGF+DRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSG PLNFERLFLKAKATCP DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGTPLNFERLFLKAKATCPIDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DATPE GCSPAF+GSLKIFLNKYVEAQKKSW TLLADNESDVGKS IGSS+ND+I+IRN
Sbjct: 1021 SDATPESGCSPAFVGSLKIFLNKYVEAQKKSWSTLLADNESDVGKSVIGSSENDNIMIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
            KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAK+ISTPIVTAALK +DNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKKISTPIVTAALKHNDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMS+RSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSTRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQD DRSKLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDTDRSKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. NCBI nr
Match: KAG6583479.1 (DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 2608.6 bits (6760), Expect = 0.0e+00
Identity = 1319/1451 (90.90%), Postives = 1346/1451 (92.76%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MN+AQ EGLVFTKQPYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPID
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLY DFLRKMRNPKLE LRK +L KKIIKKCT+LTS NKSMKCS CGYLNGSV
Sbjct: 121  SRILLEEKLYNDFLRKMRNPKLEPLRKSELAKKIIKKCTALTSNNKSMKCSGCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSD+DCELLFLS
Sbjct: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDKDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEK IVT+VPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKFIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQLK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPL+GFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLSGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPI MARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPILMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSL+ISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLVISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCP+DGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPHDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YS+LLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+QLIKQKQTTILEGYRD
Sbjct: 661  YSILLRDYKPHAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGEQLIKQKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQMIACVGQQSVGGRRAPDGF+DRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSG PLNFERLFLKAKATCP DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGTPLNFERLFLKAKATCPIDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DATPE GCSPAF+GSLKIFLNKYVEAQKKSW TLLADNESDVGKS IGSS+ND+I+IRN
Sbjct: 1021 SDATPESGCSPAFVGSLKIFLNKYVEAQKKSWSTLLADNESDVGKSVIGSSENDNIMIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
            KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAK+ISTPIVTAALK +DNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKKISTPIVTAALKHNDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMS+RSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSTRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQD DRSKLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDTDRSKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. ExPASy Swiss-Prot
Match: F4JXF9 (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 1668.3 bits (4319), Expect = 0.0e+00
Identity = 881/1455 (60.55%), Postives = 1048/1455 (72.03%), Query Frame = 0

Query: 11   FTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
            FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9    FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLY 130
             NK   C TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK CS +LL+EKLY
Sbjct: 69   PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128

Query: 131  KDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGIL 190
            +D LRKMRNP++E L+K +L K ++KKC+++ S  + + C +CGYLNG VKK  +  GI 
Sbjct: 129  EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIAAQFGIG 188

Query: 191  HYRSRSKDAGVVSEDLR----------APYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 250
                RSK  G   ++ +          A  N    +L+P  VL LFKRMSD+DCELL+++
Sbjct: 189  ISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIA 248

Query: 251  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 310
             RPE LI+T + VPP++IRPSV++ G QSNEND+T RLK+II  NAS+ + LS   S PK
Sbjct: 249  YRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPK 308

Query: 311  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 370
             ++ WD +Q EVA+ INS+VRG         PL+G +QRLKGK GRFR NL GKRVEFTG
Sbjct: 309  NMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTG 368

Query: 371  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 430
            RTVISPDPNLKITEV +PI MA+ILT+PE V+ HNIEKLRQCV NGP+KYPGAR +R+ D
Sbjct: 369  RTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPD 428

Query: 431  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 490
            GS R+L+   RKR+ADEL  G IV+RHL++GDVVLFNRQPSLHRMSIMCHR R+MPWRTL
Sbjct: 429  GSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 488

Query: 491  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 550
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 489  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFL 548

Query: 551  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 610
            TSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTP ++KPIELWTGKQ+FSVL+RP+A
Sbjct: 549  TSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNA 608

Query: 611  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 670
            S++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKATLGNGNKDGL
Sbjct: 609  SIRVYVTLNVKEKNFK--KGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGL 668

Query: 671  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 730
            YS+LLRDY +HAAA CMNRLAKLSARWIG HGFSIGIDDVQPG++L K+++ +I  GY  
Sbjct: 669  YSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQ 728

Query: 731  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 790
            C ++I  FN GNL  +AG D A+SLEA+IT ILN IREAT   CM  LHWRNSPLIMSQC
Sbjct: 729  CHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQC 788

Query: 791  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 850
            GSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHF R +K+PA              
Sbjct: 789  GSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPA-------------- 848

Query: 851  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 910
                                                                 AKGFVAN
Sbjct: 849  -----------------------------------------------------AKGFVAN 908

Query: 911  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 970
            SFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL +HYD++VRNA GC
Sbjct: 909  SFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGC 968

Query: 971  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATC-PTDGHKILSPSEFSKTVEERLS 1030
            I+QF YGDDGMDPA MEGK GAPLNF RLFLK +ATC P   H  LS  E S+  EE L 
Sbjct: 969  ILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELV 1028

Query: 1031 KNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIR 1090
            ++D +    C+ AF+ SL+ F+                        S +G          
Sbjct: 1029 RHDKSRV--CTDAFVKSLREFV------------------------SLLGVKSASP---- 1088

Query: 1091 NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1150
             +V+   +GVT +QL+VF+  C+ RY  KKIEAGTAIG IGAQSIGEPGTQMTLKTFHFA
Sbjct: 1089 PQVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFA 1148

Query: 1151 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKC 1210
            GVASMN+T GVPRI EIIN +K ISTP+++A L+    +  AR VK RIEKT LGQ+A+ 
Sbjct: 1149 GVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAES 1208

Query: 1211 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRV 1270
            I+++M+S SA + I LD + I +A L +    VK +I+ TP++KL    + VL D  L +
Sbjct: 1209 IEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVL-DTGLDI 1268

Query: 1271 LPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDK---VRNAKKFSLLVEGT 1330
             P   D+S+ HFNLH LKN+LP ++V GIKTV R V+ E+ DK   +    K+ L VEGT
Sbjct: 1269 TPV-VDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTKWKLFVEGT 1328

Query: 1331 GLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLL 1390
             L AVMGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMMLL
Sbjct: 1329 NLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLL 1360

Query: 1391 GDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMG 1436
             D+MT+RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+AA +G+ D IEGV+ECVIMG
Sbjct: 1389 ADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMG 1360

BLAST of CcUC03G044440 vs. ExPASy Swiss-Prot
Match: Q86AQ5 (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum OX=44689 GN=polr3a PE=3 SV=1)

HSP 1 Score: 1256.1 bits (3249), Expect = 0.0e+00
Identity = 695/1518 (45.78%), Postives = 930/1518 (61.26%), Query Frame = 0

Query: 18   EDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYD-TTRKPIDGGLLDPRMGPANKGCK 77
            ED  P+KI  +QF   S  +I +++ VQ+     +D   RKP   G+LD ++G ++K   
Sbjct: 7    EDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAM 66

Query: 78   CATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLYKDFLRK 137
            C TC  +  DC GH+GY+ L LPVF++GY   I+ IL+ ICKSCS ILL E+  + +LRK
Sbjct: 67   CTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRK 126

Query: 138  MRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGILHYRSRS 197
            MRN K++ L++  L+KKI  +C       K+ +C +CG  NG +KK+     I+H + + 
Sbjct: 127  MRNKKMDNLQRKSLLKKIFLEC------RKTKECLKCGSTNGMIKKS-GAFKIIHEKYKG 186

Query: 198  K------------DAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS---D 257
            K            DA   + ++++    + D LNP   L+LFK++S +D E++ +     
Sbjct: 187  KTESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIEIMNMDPVIG 246

Query: 258  RPEKLIVTDVPVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 317
            RPE+LI+T + VPP++IRPSV MD GS +NE+D+T +L  I+  N  +   +  +     
Sbjct: 247  RPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRA-EMSA 306

Query: 318  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 377
             +E WD LQ+  A  INSDV G+P  M+ +K + G  QRLKGK GRFRGNL GKRV+F+G
Sbjct: 307  IMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSG 366

Query: 378  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 437
            RTVISPDPNL I EVAVP  +A  +TYPERVT +NIE+L++ V NGPD++PGA  + + D
Sbjct: 367  RTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPGANYIIYAD 426

Query: 438  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 497
            G  + L    R++ A ELK G+IVERH+ DGD++LFNRQPSLH++SIM H+ RVMPWRTL
Sbjct: 427  GVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTL 486

Query: 498  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 557
            RFNE VC PYNADFDGDEMN+H                V NNL TP+NGE LVA+TQDFL
Sbjct: 487  RFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFL 546

Query: 558  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 617
            T+S+LI+R+D FY+R  F+LMC++  D  + +DLP PA++KP+ELWTGKQ+F VL+RP  
Sbjct: 547  TASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSV 606

Query: 618  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 677
               V  N   + ++YSK          MCP DG+VYFRNSEL+ G + K+ +G GNK+ L
Sbjct: 607  KSHVLCNFETRSRTYSK-------NLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSL 666

Query: 678  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 737
            + +L+RD+    AA CM RLAKL AR++G+ GFSIGI D++P + L ++K+  I   Y+ 
Sbjct: 667  FHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETAYKK 726

Query: 738  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 797
            C   +  + +G+L   +GC   Q+ EAK+ Q L+ IR+    +C+ +L   NSPLIM  C
Sbjct: 727  CAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLC 786

Query: 798  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 857
            GSKGS INI+QMI CVGQQ V G R P+GF +R+ PHF+  AK P               
Sbjct: 787  GSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNP--------------- 846

Query: 858  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 917
                                                                ++KGFV+N
Sbjct: 847  ----------------------------------------------------KSKGFVSN 906

Query: 918  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 977
            SFY+G+  TEFFFHTMGGREGLVDTAVKTA+TGYM RRL+KALEDLS HYD +VR++ G 
Sbjct: 907  SFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGG 966

Query: 978  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1037
            IVQF YGDDG+DPA ME K   P++F R  +  K+T        + P E  K VE  +  
Sbjct: 967  IVQFIYGDDGLDPAGMEAKD-RPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESII-- 1026

Query: 1038 NDATPECGCSPAFIGSLKIFLN------KYVE------AQKKSWGTLLADNESDV----- 1097
             D++    C+  F   +++F N       Y++       Q K     L DNE ++     
Sbjct: 1027 -DSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSFDLNDNEDEIIIEDN 1086

Query: 1098 --------GKSTIGSSDNDDIVIRN----------------------------------- 1157
                      +T  ++ N+ + I N                                   
Sbjct: 1087 SPMDISTTTTTTTTTTTNNAVKITNITTDIEMNESNKEENDKIEKERIEKEKESKRLKLL 1146

Query: 1158 -------KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTL 1217
                    VV  I  +T  Q+++FLD CL +Y   +IE GTA+GAIGAQSIGEPGTQMTL
Sbjct: 1147 GERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTL 1206

Query: 1218 KTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNL 1277
            KTFHFAGVASMNVTLGVPRIKEIIN AK ISTPI+TA+L  D ++  AR+V  RIEKT L
Sbjct: 1207 KTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTL 1266

Query: 1278 GQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLD 1337
            G +A  I+ V+      + IK+D   +   +L +++  + Q+I  T  LKLK E +    
Sbjct: 1267 GHVATHIKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNG 1326

Query: 1338 DRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLV 1397
            D KLR++P    R    + L FLKN LPAV+VKGI TV R VI +  +K    +++ LLV
Sbjct: 1327 DYKLRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVDEK---QERYQLLV 1386

Query: 1398 EGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHM 1436
            EG  L+AVM T G+ G +T SNHI+E +  LGIE AR  I+ EI   M SHGMSIDIRH+
Sbjct: 1387 EGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHV 1435

BLAST of CcUC03G044440 vs. ExPASy Swiss-Prot
Match: A4IF62 (DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1)

HSP 1 Score: 1204.1 bits (3114), Expect = 0.0e+00
Identity = 686/1462 (46.92%), Postives = 902/1462 (61.70%), Query Frame = 0

Query: 13   KQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVY-KGLY-YDTTRKPIDGGLLDPRMGP 72
            K+ + E    +KI  + F   S  E+ + A +QV  K LY  D    P+  G+LD RMG 
Sbjct: 3    KEQFRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGT 62

Query: 73   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLY 132
            + K   C TC  N  DC GHYGY+ L LP F+VGYF  ++ IL+ ICK+C  I+L ++  
Sbjct: 63   SEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEK 122

Query: 133  KDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGIL 192
            K FL  ++ P L  L+K  L KKI  KC       K   C  CG  NG+VKK   +L I+
Sbjct: 123  KQFLDYLKRPGLTYLQKRGLKKKISDKC------RKKNTCHHCGAFNGTVKKC-GLLKII 182

Query: 193  H--YRSRSKDAGVV--------------SEDLRAPYNVSNDILNPFRVLSLFKRMSDEDC 252
            H  Y++  K    +              ++++      + + LNP  VL+LFKR+  ED 
Sbjct: 183  HEKYKTNKKVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVLNLFKRIPAEDI 242

Query: 253  ELLFL---SDRPEKLIVTDVPVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQ 312
             LL +   + +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  + +
Sbjct: 243  PLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 302

Query: 313  ELSTSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGN 372
               +       +E WD LQ + A  INS++ GIP  M   K   GFVQRLKGKQGRFRGN
Sbjct: 303  HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 362

Query: 373  LCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKY 432
            L GKRV+F+GRTVISPDPNL+I EVAVP+H+A+ILT+PE+V   NI  LR+ V NGP+ +
Sbjct: 363  LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVH 422

Query: 433  PGARMLRHLDGSM-RSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMC 492
            PGA  ++     M R L    R+++A ELK+G+IVERHL DGDVVLFNRQPSLH++SIM 
Sbjct: 423  PGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 482

Query: 493  HRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHV----------------QNNLCTPKNG 552
            H  RV P RT RFNE VC PYNADFDGDEMN+H+                + NL TP+NG
Sbjct: 483  HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 542

Query: 553  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD---LVDLPTPALIKPIELW 612
            E L+A+ QDFLT ++L+T KDTF+DRA    + + +  G D    V LP P ++KP+ LW
Sbjct: 543  EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLW 602

Query: 613  TGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQ 672
            TGKQ+FSV++RP     V  NL  K K Y          E +C ND +V  +NSEL+SG 
Sbjct: 603  TGKQIFSVILRPSDDNPVRANLRTKGKQYC------GRGEDLCVNDSYVTIQNSELMSGS 662

Query: 673  VGKATLGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQL 732
            + K TLG+G+K+ ++ +LLRD+  + AA  M+RLA+L+  ++ N GFSIGI DV PG  L
Sbjct: 663  MDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 722

Query: 733  IKQKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQ 792
            +K K   +  GY+ CD+ I   NTG L  + GC A ++LEA I + L+ IR+   + C++
Sbjct: 723  LKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLR 782

Query: 793  NLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA 852
             L   NSPL M+ CGSKGS INISQMIACVGQQ++ G R PDGF +RSLPHF + +K PA
Sbjct: 783  ELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPA 842

Query: 853  IKEILERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLL 912
                                                                        
Sbjct: 843  ------------------------------------------------------------ 902

Query: 913  YLDKYYQAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 972
                   AKGFVANSFYSGLT TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL
Sbjct: 903  -------AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 962

Query: 973  SIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILS 1032
               YD +VR++ G I+QF YG DG+DPA MEGK   PL F+R+    KA  P      LS
Sbjct: 963  CSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCRSEPALS 1022

Query: 1033 PSEFSKTVEERLSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKS 1092
             +E   + E  + KN+    C C  +F+  +K F+ +  E  KK+             + 
Sbjct: 1023 KNELLLSAESIMKKNEFL--C-CQDSFLQEIKKFIKEVSEKIKKT-------------RD 1082

Query: 1093 TIGSSDNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGE 1152
              G +DN       +V+  +  +T  Q++ FL+TC  +Y   ++E G+A+GA+ AQSIGE
Sbjct: 1083 KYGINDNG--TTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGE 1142

Query: 1153 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKA 1212
            PGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN +K ISTPI+TA L +DD+ + AR+VK 
Sbjct: 1143 PGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKG 1202

Query: 1213 RIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKH 1272
            RIEKT LG+I++ I+ V       I +KL +E+IR   L V+A  V+ +I ++ KL++K 
Sbjct: 1203 RIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKP 1262

Query: 1273 EHVNVLDDRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNA 1332
              V V  +  + V P++  +S +++ L FLK  LP VVV+GI  V RAVI    D+    
Sbjct: 1263 GDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--HIDEQSGK 1322

Query: 1333 KKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGM 1392
            +K+ LLVEG  L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGM
Sbjct: 1323 EKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 1362

Query: 1393 SIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKI 1433
            SID RH+MLL DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+AA  G+ D +
Sbjct: 1383 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 1362

BLAST of CcUC03G044440 vs. ExPASy Swiss-Prot
Match: O14802 (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2)

HSP 1 Score: 1203.7 bits (3113), Expect = 0.0e+00
Identity = 690/1462 (47.20%), Postives = 900/1462 (61.56%), Query Frame = 0

Query: 13   KQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVY-KGLY-YDTTRKPIDGGLLDPRMGP 72
            K+ + E    +KI  + F   S  E+ + A +QV  K LY  D    P+  G+LD RMG 
Sbjct: 3    KEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGT 62

Query: 73   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLY 132
            + K   C TC  N  DC GHYGY+ L LP F+VGYF  ++ IL+ ICK+C  I+L ++  
Sbjct: 63   SEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEK 122

Query: 133  KDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGIL 192
            K FL  ++ P L  L+K  L KKI  KC       K   C  CG  NG+VKK   +L I+
Sbjct: 123  KQFLDYLKRPGLTYLQKRGLKKKISDKC------RKKNICHHCGAFNGTVKKC-GLLKII 182

Query: 193  H--YRSRSKDAGVVSEDLRAPYNV--------------SNDILNPFRVLSLFKRMSDEDC 252
            H  Y++  K    +  +    +                + + LNP  VL+LFKR+  ED 
Sbjct: 183  HEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDV 242

Query: 253  ELLFL---SDRPEKLIVTDVPVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQ 312
             LL +   + +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  + +
Sbjct: 243  PLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 302

Query: 313  ELSTSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGN 372
               +       +E WD LQ + A  INS++ GIP  M   K   GFVQRLKGKQGRFRGN
Sbjct: 303  HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 362

Query: 373  LCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKY 432
            L GKRV+F+GRTVISPDPNL+I EVAVP+H+A+ILT+PE+V   NI  LR+ V NGP+ +
Sbjct: 363  LSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVH 422

Query: 433  PGARMLRHLDGSM-RSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMC 492
            PGA  ++     M R L    R+++A ELKYG+IVERHL DGDVVLFNRQPSLH++SIM 
Sbjct: 423  PGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 482

Query: 493  HRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHV----------------QNNLCTPKNG 552
            H  RV P RT RFNE VC PYNADFDGDEMN+H+                + NL TP+NG
Sbjct: 483  HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 542

Query: 553  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD---LVDLPTPALIKPIELW 612
            E L+A+ QDFLT ++L+T KDTF+DRA    + + +  G D    V LP P ++KP+ LW
Sbjct: 543  EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLW 602

Query: 613  TGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQ 672
            TGKQ+FSV++RP     V  NL  K K Y   KG     E +C ND +V  +NSEL+SG 
Sbjct: 603  TGKQIFSVILRPSDDNPVRANLRTKGKQYCG-KG-----EDLCANDSYVTIQNSELMSGS 662

Query: 673  VGKATLGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQL 732
            + K TLG+G+K+ ++ +LLRD+  + AA  M+RLA+L+  ++ N GFSIGI DV PG  L
Sbjct: 663  MDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 722

Query: 733  IKQKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQ 792
            +K K   +  GY+ CD+ I   NTG L  + GC A ++LEA I + L+ IR+   + C++
Sbjct: 723  LKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLR 782

Query: 793  NLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA 852
             L   NSPL M+ CGSKGS INISQMIACVGQQ++ G R PDGF +RSLPHF + +K PA
Sbjct: 783  ELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPA 842

Query: 853  IKEILERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLL 912
                                                                        
Sbjct: 843  ------------------------------------------------------------ 902

Query: 913  YLDKYYQAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 972
                   AKGFVANSFYSGLT TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL
Sbjct: 903  -------AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 962

Query: 973  SIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILS 1032
               YD +VR++ G I+QF YG DG+DPA MEGK   PL F+R+    KA  P      LS
Sbjct: 963  CSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIKAVFPCPSEPALS 1022

Query: 1033 PSEFSKTVEERLSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKS 1092
             +E   T E  + K++    C C  +F+  +K F+    E  KK+             + 
Sbjct: 1023 KNELILTTESIMKKSEFL--C-CQDSFLQEIKKFIKGVSEKIKKT-------------RD 1082

Query: 1093 TIGSSDNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGE 1152
              G +DN       +V+  +  +T  Q++ FL+TC  +Y   ++E G+A+GA+ AQSIGE
Sbjct: 1083 KYGINDNG--TTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGE 1142

Query: 1153 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKA 1212
            PGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN +K ISTPI+TA L +DD+ + AR+VK 
Sbjct: 1143 PGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKG 1202

Query: 1213 RIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKH 1272
            RIEKT LG+I++ I+ V       I +KL +E+IR   L V+A  V+ + I T KL++K 
Sbjct: 1203 RIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYS-ICTSKLRVKP 1262

Query: 1273 EHVNVLDDRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNA 1332
              V V  +  + V P++  +S +++ L FLK  LP VVV+GI  V RAVI    D+    
Sbjct: 1263 GDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVI--HIDEQSGK 1322

Query: 1333 KKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGM 1392
            +K+ LLVEG  L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGM
Sbjct: 1323 EKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 1362

Query: 1393 SIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKI 1433
            SID RH+MLL DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+AA  G+ D +
Sbjct: 1383 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 1362

BLAST of CcUC03G044440 vs. ExPASy Swiss-Prot
Match: Q5ZL98 (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1)

HSP 1 Score: 1199.1 bits (3101), Expect = 0.0e+00
Identity = 688/1462 (47.06%), Postives = 903/1462 (61.76%), Query Frame = 0

Query: 13   KQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVY-KGLY-YDTTRKPIDGGLLDPRMGP 72
            K+ + E    +KI  + F   S  E+ + A +QV  K LY  D    P+  G+LD RMG 
Sbjct: 3    KEQFRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGT 62

Query: 73   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLY 132
            + K   C TC  N  DC GHYGY+ L LP F+VGYF  ++ IL+ ICK+C RI+L  +  
Sbjct: 63   SEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEK 122

Query: 133  KDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGIL 192
            K FL  ++ P L  L+K  L KK+ +KC       K   C  CG  NG+VKK   +L I+
Sbjct: 123  KQFLDYLKRPGLTYLQKRGLKKKVSEKC------RKKNTCPYCGAFNGTVKKC-GLLKII 182

Query: 193  H--YRSRSKDAGVV--------------SEDLRAPYNVSNDILNPFRVLSLFKRMSDEDC 252
            H  Y++  K    +              ++++      + + LNP  VL+LFKR+  ED 
Sbjct: 183  HEKYKTNKKVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVLNLFKRIPAEDI 242

Query: 253  ELLFL---SDRPEKLIVTDVPVPPIAIRPSVIMD-GSQSNENDITERLKRIIQQNASVSQ 312
             LL +   + +P  LI+T + VPP+ IRPSV+ D  S +NE+D+T +L  II  N  + +
Sbjct: 243  PLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKK 302

Query: 313  ELSTSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGN 372
               +       +E WD LQ + A  INS++ GIP  M   K   GFVQRLKGKQGRFRGN
Sbjct: 303  HRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGN 362

Query: 373  LCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKY 432
            L GKRV+F+GRTVISPDPNL+I EVAVPIH+A+ILT+PE+V   NI  +R+ V NGPD +
Sbjct: 363  LSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVH 422

Query: 433  PGARMLRHLDGSM-RSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMC 492
            PGA  ++     M R L    R+++A ELK+G+IVERHL DGD+VLFNRQPSLH++SIM 
Sbjct: 423  PGANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMA 482

Query: 493  HRVRVMPWRTLRFNESVCNPYNADFDGDEMNMHV----------------QNNLCTPKNG 552
            H  RV P RT RFNE VC PYNADFDGDEMN+H+                + NL TP+NG
Sbjct: 483  HIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 542

Query: 553  EILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD---LVDLPTPALIKPIELW 612
            E L+A+ QDFLT ++L+T KDTF+DRA    + + +  G D    V LP PA++KP+ LW
Sbjct: 543  EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILKPVTLW 602

Query: 613  TGKQLFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQ 672
            TGKQ+FS +++P     V  NL  K K Y   KG     E +C ND +V  +NSEL+SG 
Sbjct: 603  TGKQVFSSILKPSDDCPVKANLRTKGKQYCG-KG-----EDLCYNDSYVTIQNSELMSGS 662

Query: 673  VGKATLGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQL 732
            + K TLG+G+K+ ++ +LLRD+    AA  M+RLA+L+  ++ N GFSIGI DV PG  L
Sbjct: 663  MDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGL 722

Query: 733  IKQKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQ 792
            +K K   +  GY+ CD+ I   NTG L  + GC A ++LEA I + L+ IR+   + C++
Sbjct: 723  LKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLR 782

Query: 793  NLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA 852
             L   NSPLIM+ CGSKGS INISQMIACVGQQ++ G R PDGF +RSLPHF + +K PA
Sbjct: 783  ELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPA 842

Query: 853  IKEILERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLL 912
                                                                        
Sbjct: 843  ------------------------------------------------------------ 902

Query: 913  YLDKYYQAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDL 972
                   AKGFVANSFYSGLT TEFFFHTM GREGLVDTAVKTA+TGYM RRL+K+LEDL
Sbjct: 903  -------AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDL 962

Query: 973  SIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILS 1032
               YD +VR++ G I+QF YG DG+DPA MEGK   PL F+R+    +A  P      LS
Sbjct: 963  CSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKRVLDNIRAVYPCRSEPALS 1022

Query: 1033 PSEFSKTVEERLSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKS 1092
             +E   T E  + KN+    C C  +F+  +K F+    E  KK+             + 
Sbjct: 1023 KNELVLTSESIMKKNEFL--C-CRDSFLQEIKKFIKGVSEKIKKT-------------RD 1082

Query: 1093 TIGSSDNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGE 1152
              G +DN       +V+  +  +T  QL+ FL+TC  +Y   ++E G+A+GA+ AQSIGE
Sbjct: 1083 KYGINDNG--TTEPRVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGE 1142

Query: 1153 PGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKA 1212
            PGTQMTLKTFHFAGVASMN+TLGVPRIKEIIN +K ISTPI+TA L +DD+ + AR+VK 
Sbjct: 1143 PGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKG 1202

Query: 1213 RIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKH 1272
            RIEKT LG+I++ I+ V       I +KL +E+IR   L V+A  V+ +I ++ KL++K 
Sbjct: 1203 RIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICIS-KLRVKP 1262

Query: 1273 EHVNVLDDRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNA 1332
              V V  +  + V P++  +S +++ L  LK  LP VVV+GI  V RAVI    D+    
Sbjct: 1263 GDVAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVI--HIDEQSGK 1322

Query: 1333 KKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGM 1392
            +K+ LLVEG  L+AVM T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGM
Sbjct: 1323 EKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 1362

Query: 1393 SIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKI 1433
            SID RH+MLL DLMT++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+AA  G+ D +
Sbjct: 1383 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 1362

BLAST of CcUC03G044440 vs. ExPASy TrEMBL
Match: A0A1S3CNX9 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3 SV=1)

HSP 1 Score: 2610.1 bits (6764), Expect = 0.0e+00
Identity = 1315/1451 (90.63%), Postives = 1349/1451 (92.97%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MN+AQ EGLVFTKQPYIEDVGPRKIKSMQFTTFSG+EISK+AEVQVYKGLYYDTTRKPID
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGY++L+LPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKC++LT+GNKS KCSRCGYLNGSV
Sbjct: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYR+RSKDAGVVSEDLRAPYNVSNDILNPFRVL LF+RMSDEDCELLFLS
Sbjct: 181  KKAVSMLGILHYRARSKDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEKLI+T+V VPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDL+DLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLIDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YSVLLRDYKAHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGDQL+K+ + TILEGYRD
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKNKXTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI+YDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIYYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP+DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DA+PECGCSPAFIGSLKIFLNKY+EAQKKSW TLLADNE+ V KS I SSDND+IVIRN
Sbjct: 1021 DDASPECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLADNETAVDKSIISSSDNDNIVIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
             VVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 NVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAKRISTPIVTAAL  DDNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQDADR+KLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. ExPASy TrEMBL
Match: A0A6J1HLT9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111464789 PE=3 SV=1)

HSP 1 Score: 2609.7 bits (6763), Expect = 0.0e+00
Identity = 1320/1451 (90.97%), Postives = 1346/1451 (92.76%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MNKAQ EGLVFTKQPYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPID
Sbjct: 1    MNKAQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLY DFLRKMRNPKLE LRK +L KKIIKKCT+LTS NKSMKCS CGYLNGSV
Sbjct: 121  SRILLEEKLYNDFLRKMRNPKLEPLRKSELAKKIIKKCTALTSNNKSMKCSGCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSD+DCELLFLS
Sbjct: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDKDCELLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEK IVT+VPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKFIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQLK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPL+GFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLSGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPI MARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPILMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSL+ISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLVISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCP+DGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPHDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YS+LLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+QLIKQKQTTILEGYRD
Sbjct: 661  YSILLRDYKPHAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGEQLIKQKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQMIACVGQQSVGGRRAPDGF+DRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSG PLNFERLFLKAKATCP DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGTPLNFERLFLKAKATCPIDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DATPE GCSPAF+GSLKIFLNKYVEAQKKSW TLLADNESDVGKS IGSS+ND+I+IRN
Sbjct: 1021 SDATPESGCSPAFVGSLKIFLNKYVEAQKKSWSTLLADNESDVGKSVIGSSENDNIMIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
            KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAK+ISTPIVTAALK +DNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKKISTPIVTAALKHNDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMS+RSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSTRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQD DRSKLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDTDRSKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. ExPASy TrEMBL
Match: A0A6J1I0L0 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 PE=3 SV=1)

HSP 1 Score: 2605.9 bits (6753), Expect = 0.0e+00
Identity = 1316/1451 (90.70%), Postives = 1346/1451 (92.76%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            MNK Q EGLVFTKQPYIEDVGPRKIKSMQF+TFSGSEISKMAEVQVYKGLYYDTTRKPID
Sbjct: 1    MNKTQVEGLVFTKQPYIEDVGPRKIKSMQFSTFSGSEISKMAEVQVYKGLYYDTTRKPID 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            SRILLEEKLY DFLRKMRNPKLE LRK +L KKIIKKCT+LTS NKSMKCS CGYLNGSV
Sbjct: 121  SRILLEEKLYNDFLRKMRNPKLEPLRKSELAKKIIKKCTALTSNNKSMKCSGCGYLNGSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 240
            KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSD+DCE+LFLS
Sbjct: 181  KKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDKDCEVLFLS 240

Query: 241  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 300
            DRPEK IVT+VPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQ K
Sbjct: 241  DRPEKFIVTNVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQLK 300

Query: 301  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360
             LESWDMLQSEVAQLINSDVRGIPFTMQVSKPL+GFVQRLKGKQGRFRGNLCGKRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLSGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420
            RTVISPDPNLKITEVAVPI MARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD
Sbjct: 361  RTVISPDPNLKITEVAVPILMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480
            GSMRSL+ISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL
Sbjct: 421  GSMRSLVISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 481  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 540
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600
            TSSFLITRKDTFYDR+AFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA
Sbjct: 541  TSSFLITRKDTFYDRSAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 600

Query: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660
            SMKVYLNLTVKEKSYSKVKGNEKERETMCP+DGFVYFRNSELISGQVGKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPHDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 661  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 720
            YS+LLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQPG+QLIKQKQTTILEGYRD
Sbjct: 661  YSILLRDYKPHAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGEQLIKQKQTTILEGYRD 720

Query: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780
            CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 840
            GSKGSPINISQMIACVGQQSVGGRRAPDGF+DRSLPHFRRKAKTPA              
Sbjct: 781  GSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFRRKAKTPA-------------- 840

Query: 841  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 900
                                                                 AKGFVAN
Sbjct: 841  -----------------------------------------------------AKGFVAN 900

Query: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960
            SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC
Sbjct: 901  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 960

Query: 961  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEERLSK 1020
            IVQFCYGDDGMDPAQMEGKSG PLNFERLFLKAKATCP DG+KILSPSEFS+TVE+RLSK
Sbjct: 961  IVQFCYGDDGMDPAQMEGKSGTPLNFERLFLKAKATCPIDGNKILSPSEFSETVEDRLSK 1020

Query: 1021 NDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRN 1080
            +DA+PECGCSPAF+GSLKIFLNKYVEAQKKSW TLLADNES+VGKS IGSS+ND+I+IRN
Sbjct: 1021 SDASPECGCSPAFVGSLKIFLNKYVEAQKKSWSTLLADNESNVGKSIIGSSENDNIMIRN 1080

Query: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140
            KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG
Sbjct: 1081 KVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1140

Query: 1141 VASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCI 1200
            VASMNVTLGVPRIKEIINGAK+ISTPIVTAALK +DNVNIARMVKARIEKTNLGQIAKCI
Sbjct: 1141 VASMNVTLGVPRIKEIINGAKKISTPIVTAALKHNDNVNIARMVKARIEKTNLGQIAKCI 1200

Query: 1201 QIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRVL 1260
            QIVMS+RSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKLRVL
Sbjct: 1201 QIVMSTRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVL 1260

Query: 1261 PQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEGTGLQA 1320
            PQD DRSKLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEGTGLQA
Sbjct: 1261 PQDTDRSKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQA 1320

Query: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380
            VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM
Sbjct: 1321 VMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLM 1380

Query: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMGIPMP 1436
            TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA+VNGRDDKIEGVSECVIMGIPMP
Sbjct: 1381 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMP 1384

BLAST of CcUC03G044440 vs. ExPASy TrEMBL
Match: A0A2I4DDG5 (DNA-directed RNA polymerase subunit OS=Juglans regia OX=51240 GN=LOC108979063 PE=3 SV=1)

HSP 1 Score: 2093.9 bits (5424), Expect = 0.0e+00
Identity = 1054/1460 (72.19%), Postives = 1199/1460 (82.12%), Query Frame = 0

Query: 1    MNKAQAEGLVFTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPID 60
            M  AQAE + FTK PYIEDVGPRKIKSM+F+TFS SEISK+AEVQVYKG YYD  R PI+
Sbjct: 1    MAGAQAEDIAFTKHPYIEDVGPRKIKSMKFSTFSESEISKLAEVQVYKGQYYDAKRNPIE 60

Query: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSC 120
            GGLLDPRMGPANK C CATCH +FG+CPGH+GYL LA+PV+NVGY +TIL+ILKCICKSC
Sbjct: 61   GGLLDPRMGPANKNCICATCHGSFGNCPGHFGYLKLAVPVYNVGYMSTILDILKCICKSC 120

Query: 121  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 180
            + ILLEE L K++L+KMR+PK+E L+K +L+K I+KKC +LTSGNK++KCSRCGY+N SV
Sbjct: 121  AHILLEENLRKEYLKKMRSPKIEPLKKTELMKVIVKKCNNLTSGNKAVKCSRCGYVNVSV 180

Query: 181  KKAVSMLGILHYRSRSKDAGVV--------SEDLRAPYNVSNDILNPFRVLSLFKRMSDE 240
            K+A+SM GILH R +  D  V         +++ ++P+NV+  ILNP +VL LFKRM DE
Sbjct: 181  KRAMSMPGILHERQKCNDGSVEEFRSAISHTKESKSPFNVATYILNPVQVLVLFKRMLDE 240

Query: 241  DCELLFLSDRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQEL 300
            DCELL+LSDRPEKLI+T++ VPPI IRPSVIMDGSQSNENDITERLK+IIQ NAS+SQEL
Sbjct: 241  DCELLYLSDRPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKKIIQANASLSQEL 300

Query: 301  STSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLC 360
              ++S  K L  WD+LQ EVAQ INSDVR +PFTMQVSKPL GFVQRLKGKQGRFRGNL 
Sbjct: 301  LEASSASKCLAGWDILQLEVAQYINSDVR-VPFTMQVSKPLGGFVQRLKGKQGRFRGNLS 360

Query: 361  GKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPG 420
            GKRVE+TGRTVISPDPNLKITEVA+PI MARILTYPE V+ HNIEKLRQCV NGPDKYPG
Sbjct: 361  GKRVEYTGRTVISPDPNLKITEVAIPIQMARILTYPECVSHHNIEKLRQCVCNGPDKYPG 420

Query: 421  ARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRV 480
            ARML H DGSMRSL  S R++LAD LKYGEIV RHLEDGD+VLFNRQPSLHRMSIMCHR 
Sbjct: 421  ARMLTHTDGSMRSLFPSVRRKLADALKYGEIVHRHLEDGDIVLFNRQPSLHRMSIMCHRA 480

Query: 481  RVMPWRTLRFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEIL 540
            R+MPWRTLRFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEIL
Sbjct: 481  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEIL 540

Query: 541  VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLF 600
            VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPTPA++KPIELWTGKQLF
Sbjct: 541  VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMMDGMDFVDLPTPAILKPIELWTGKQLF 600

Query: 601  SVLVRPHASMKVYLNLTVKEKSYSKVK-GNEKERETMCPNDGFVYFRNSELISGQVGKAT 660
            SVLVRPH +++V++NLT+KEKSY K K   E+E + MCPNDGFVYFRNSEL+SGQ+GKAT
Sbjct: 601  SVLVRPHTNVRVFVNLTLKEKSYMKPKEEGEREMDAMCPNDGFVYFRNSELLSGQLGKAT 660

Query: 661  LGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQ 720
            LGNGNKDGL+S+LLRDYKAHAAAACMNRLAKLSARWIGNHGF+IGIDDVQP   L  ++Q
Sbjct: 661  LGNGNKDGLFSILLRDYKAHAAAACMNRLAKLSARWIGNHGFTIGIDDVQPSKYLNDRRQ 720

Query: 721  TTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWR 780
             TI +GY+ CD++I L+N GNLPPE GCDAAQ+LEA IT+ILN IR+ T  VCM+ LHWR
Sbjct: 721  ETISKGYQGCDEKIKLYNEGNLPPETGCDAAQTLEAGITRILNNIRDETGKVCMKELHWR 780

Query: 781  NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEIL 840
            NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHF RKAKTPA     
Sbjct: 781  NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPA----- 840

Query: 841  ERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKY 900
                                                                        
Sbjct: 841  ------------------------------------------------------------ 900

Query: 901  YQAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYD 960
              AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSR+LIKALEDLSI YD
Sbjct: 901  --AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRKLIKALEDLSIQYD 960

Query: 961  SSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFS 1020
            ++VRNA GCIVQF YGDDGMDPA ME KSG+PLNFERLFLKAKATCP+ G + LSPSE S
Sbjct: 961  NTVRNASGCIVQFRYGDDGMDPANMEAKSGSPLNFERLFLKAKATCPSGGTEYLSPSEVS 1020

Query: 1021 KTVEERLSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSS 1080
            + VE R S+ D TPE GCS AF  S K FL++Y ++ +K+  T          KS    +
Sbjct: 1021 ERVESRFSEIDMTPEGGCSVAFKKSFKSFLDEYGKSLEKTMDTF---------KSVENLA 1080

Query: 1081 DNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQM 1140
              ++  I+ K+V+NI+G+T +QL+VFL+TC+SRYH KKIEAGTAIGAIGAQSIGEPGTQM
Sbjct: 1081 AKENSEIQEKIVKNISGITPKQLEVFLNTCISRYHLKKIEAGTAIGAIGAQSIGEPGTQM 1140

Query: 1141 TLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKT 1200
            TLKTFHFAGVASMNVTLGVPRIKEI+NGAK+ISTPI+TAAL  DDNVN ARMV+ RIEKT
Sbjct: 1141 TLKTFHFAGVASMNVTLGVPRIKEIMNGAKKISTPIITAALNCDDNVNAARMVRGRIEKT 1200

Query: 1201 NLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNV 1260
            NLGQ+AK I++VM+SRSA + +KLDME+IRD +L +DAN+VK++II TPKLKLKHEH+ V
Sbjct: 1201 NLGQVAKSIKLVMTSRSASLVVKLDMERIRDVQLCIDANIVKESIIQTPKLKLKHEHIKV 1260

Query: 1261 LDDRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSL 1320
            LD  KL +L  + D+SK+HF+LH LKN+LP V+VKGIKTV RA+IK+E++K     K+SL
Sbjct: 1261 LDVGKLEILSPETDKSKIHFHLHSLKNLLPMVIVKGIKTVERAIIKKEQNKKMKTIKYSL 1320

Query: 1321 LVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIR 1380
            LVEG GLQ VMGTEG+DGC T SNH+IEVQQ LGIEAARKCIIEEIKYTMESHGM+IDIR
Sbjct: 1321 LVEGAGLQEVMGTEGIDGCKTTSNHVIEVQQTLGIEAARKCIIEEIKYTMESHGMNIDIR 1380

Query: 1381 HMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSE 1436
            HMMLL DLMTFRGEVLGITRFGIQKMDKS+LMLASFEKTADHLFNA++NGRDD+IEGVSE
Sbjct: 1381 HMMLLADLMTFRGEVLGITRFGIQKMDKSILMLASFEKTADHLFNASINGRDDRIEGVSE 1383

BLAST of CcUC03G044440 vs. ExPASy TrEMBL
Match: A0A0A0LV87 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_1G084260 PE=3 SV=1)

HSP 1 Score: 2000.7 bits (5182), Expect = 0.0e+00
Identity = 1018/1138 (89.46%), Postives = 1041/1138 (91.48%), Query Frame = 0

Query: 178  GSVKKAVSMLGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELL 237
            GSVKKAVSMLGILHYR+RSKDAGVVSEDLRAPYNVSNDILNPFRVL LF+RMSDEDCELL
Sbjct: 4    GSVKKAVSMLGILHYRARSKDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELL 63

Query: 238  FLSDRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNS 297
            FLS+RPEKLI+T+V VPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNS
Sbjct: 64   FLSNRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNS 123

Query: 298  QPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVE 357
            Q K LESWDMLQSEVAQLINSDVRGIPF+MQVSKPLAGFVQRLKGKQGRFRGNLCGKRVE
Sbjct: 124  QAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVE 183

Query: 358  FTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLR 417
            FTGRTVISPDPNLKITEVAVPIHMARILTYPERVT HNIEKLRQCVSNGPDKYPGARMLR
Sbjct: 184  FTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLR 243

Query: 418  HLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW 477
            HLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW
Sbjct: 244  HLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW 303

Query: 478  RTLRFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQ 537
            RTLRFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQ
Sbjct: 304  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQ 363

Query: 538  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVR 597
            DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAL+KPIELWTGKQLFSVLVR
Sbjct: 364  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVR 423

Query: 598  PHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNK 657
            PHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNK
Sbjct: 424  PHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNK 483

Query: 658  DGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEG 717
            DGLYSVLLRDYKAHAAA CMNRLAKLSARWIGNHGFSIGIDDVQPGDQL+K+KQTTILEG
Sbjct: 484  DGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEG 543

Query: 718  YRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIM 777
            YRDCDKQINLFNTGNLPPEAGCDAAQSLE+KITQILNGIREATANVCMQNLHWRNSPLIM
Sbjct: 544  YRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIM 603

Query: 778  SQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRH 837
            SQCGSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA           
Sbjct: 604  SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPA----------- 663

Query: 838  AVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGF 897
                                                                    AKGF
Sbjct: 664  --------------------------------------------------------AKGF 723

Query: 898  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNA 957
            VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNA
Sbjct: 724  VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNA 783

Query: 958  GGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPTDGHKILSPSEFSKTVEER 1017
            GGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCP+DG+KILSPSEFS+TVE+R
Sbjct: 784  GGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDR 843

Query: 1018 LSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIV 1077
            LSK+DA+PECGCSPAF+GSLKIFLNKYVEAQKKSWGTLLADNES V KS I SSDND+IV
Sbjct: 844  LSKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIV 903

Query: 1078 IRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFH 1137
            IRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFH
Sbjct: 904  IRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFH 963

Query: 1138 FAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIA 1197
            FAGVASMNVTLGVPRIKEIINGAKRISTPIVTAAL  DDNVNIARMVKARIEKTNLGQIA
Sbjct: 964  FAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIA 1023

Query: 1198 KCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKL 1257
            KCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAI++TPKLKLKHEH+NVLDDRKL
Sbjct: 1024 KCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKL 1074

Query: 1258 RVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDKVRNAKKFSLLVEG 1300
            RVLPQDADR+KLHFNLHFLKNMLP VVVKGIKTVGRAVIKEEKDK RNAKKFSLLVEG
Sbjct: 1084 RVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEG 1074

BLAST of CcUC03G044440 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 1668.3 bits (4319), Expect = 0.0e+00
Identity = 881/1455 (60.55%), Postives = 1048/1455 (72.03%), Query Frame = 0

Query: 11   FTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
            FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9    FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLY 130
             NK   C TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK CS +LL+EKLY
Sbjct: 69   PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128

Query: 131  KDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSVKKAVSMLGIL 190
            +D LRKMRNP++E L+K +L K ++KKC+++ S  + + C +CGYLNG VKK  +  GI 
Sbjct: 129  EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMVKKIAAQFGIG 188

Query: 191  HYRSRSKDAGVVSEDLR----------APYNVSNDILNPFRVLSLFKRMSDEDCELLFLS 250
                RSK  G   ++ +          A  N    +L+P  VL LFKRMSD+DCELL+++
Sbjct: 189  ISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIA 248

Query: 251  DRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPK 310
             RPE LI+T + VPP++IRPSV++ G QSNEND+T RLK+II  NAS+ + LS   S PK
Sbjct: 249  YRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPK 308

Query: 311  YLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 370
             ++ WD +Q EVA+ INS+VRG         PL+G +QRLKGK GRFR NL GKRVEFTG
Sbjct: 309  NMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTG 368

Query: 371  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 430
            RTVISPDPNLKITEV +PI MA+ILT+PE V+ HNIEKLRQCV NGP+KYPGAR +R+ D
Sbjct: 369  RTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPD 428

Query: 431  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 490
            GS R+L+   RKR+ADEL  G IV+RHL++GDVVLFNRQPSLHRMSIMCHR R+MPWRTL
Sbjct: 429  GSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 488

Query: 491  RFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGEILVASTQDFL 550
            RFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGEILVASTQDFL
Sbjct: 489  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFL 548

Query: 551  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLVRPHA 610
            TSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTP ++KPIELWTGKQ+FSVL+RP+A
Sbjct: 549  TSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNA 608

Query: 611  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 670
            S++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKATLGNGNKDGL
Sbjct: 609  SIRVYVTLNVKEKNFK--KGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGL 668

Query: 671  YSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILEGYRD 730
            YS+LLRDY +HAAA CMNRLAKLSARWIG HGFSIGIDDVQPG++L K+++ +I  GY  
Sbjct: 669  YSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQ 728

Query: 731  CDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLIMSQC 790
            C ++I  FN GNL  +AG D A+SLEA+IT ILN IREAT   CM  LHWRNSPLIMSQC
Sbjct: 729  CHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQC 788

Query: 791  GSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVV 850
            GSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHF R +K+PA              
Sbjct: 789  GSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPA-------------- 848

Query: 851  DVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVAN 910
                                                                 AKGFVAN
Sbjct: 849  -----------------------------------------------------AKGFVAN 908

Query: 911  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGC 970
            SFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYMSRRL+KALEDL +HYD++VRNA GC
Sbjct: 909  SFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGC 968

Query: 971  IVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATC-PTDGHKILSPSEFSKTVEERLS 1030
            I+QF YGDDGMDPA MEGK GAPLNF RLFLK +ATC P   H  LS  E S+  EE L 
Sbjct: 969  ILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELV 1028

Query: 1031 KNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIR 1090
            ++D +    C+ AF+ SL+ F+                        S +G          
Sbjct: 1029 RHDKSRV--CTDAFVKSLREFV------------------------SLLGVKSASP---- 1088

Query: 1091 NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1150
             +V+   +GVT +QL+VF+  C+ RY  KKIEAGTAIG IGAQSIGEPGTQMTLKTFHFA
Sbjct: 1089 PQVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFA 1148

Query: 1151 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKC 1210
            GVASMN+T GVPRI EIIN +K ISTP+++A L+    +  AR VK RIEKT LGQ+A+ 
Sbjct: 1149 GVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAES 1208

Query: 1211 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKLKLKHEHVNVLDDRKLRV 1270
            I+++M+S SA + I LD + I +A L +    VK +I+ TP++KL    + VL D  L +
Sbjct: 1209 IEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVL-DTGLDI 1268

Query: 1271 LPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDK---VRNAKKFSLLVEGT 1330
             P   D+S+ HFNLH LKN+LP ++V GIKTV R V+ E+ DK   +    K+ L VEGT
Sbjct: 1269 TPV-VDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTKWKLFVEGT 1328

Query: 1331 GLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLL 1390
             L AVMGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMMLL
Sbjct: 1329 NLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLL 1360

Query: 1391 GDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNAAVNGRDDKIEGVSECVIMG 1436
             D+MT+RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+AA +G+ D IEGV+ECVIMG
Sbjct: 1389 ADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMG 1360

BLAST of CcUC03G044440 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 1638.2 bits (4241), Expect = 0.0e+00
Identity = 877/1474 (59.50%), Postives = 1045/1474 (70.90%), Query Frame = 0

Query: 11   FTKQPYIEDVGPRKIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
            FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9    FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71   ANKGCKCATCHANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICK----------SC 130
             NK   C TC  NF +CPGHYGYL L LPV+NVGYF  IL+ILKCICK           C
Sbjct: 69   PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRC 128

Query: 131  SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCTSLTSGNKSMKCSRCGYLNGSV 190
            S +LL+EKLY+D LRKMRNP++E L+K +L K ++KKC+++ S  + + C +CGYLNG V
Sbjct: 129  SNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGMV 188

Query: 191  KKAVSMLGILHYRSRSKDAGVVSEDLR----------APYNVSNDILNPFRVLSLFKRMS 250
            KK  +  GI     RSK  G   ++ +          A  N    +L+P  VL LFKRMS
Sbjct: 189  KKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMS 248

Query: 251  DEDCELLFLSDRPEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQ 310
            D+DCELL+++ RPE LI+T + VPP++IRPSV++ G QSNEND+T RLK+II  NAS+ +
Sbjct: 249  DKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHK 308

Query: 311  ELSTSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGN 370
             LS   S PK ++ WD +Q EVA+ INS+VRG         PL+G +QRLKGK GRFR N
Sbjct: 309  ILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRAN 368

Query: 371  LCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKY 430
            L GKRVEFTGRTVISPDPNLKITEV +PI MA+ILT+PE V+ HNIEKLRQCV NGP+KY
Sbjct: 369  LSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKY 428

Query: 431  PGARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCH 490
            PGAR +R+ DGS R+L+   RKR+ADEL  G IV+RHL++GDVVLFNRQPSLHRMSIMCH
Sbjct: 429  PGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCH 488

Query: 491  RVRVMPWRTLRFNESVCNPYNADFDGDEMNMH----------------VQNNLCTPKNGE 550
            R R+MPWRTLRFNESVCNPYNADFDGDEMNMH                VQNNLCTPKNGE
Sbjct: 489  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 548

Query: 551  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALIKPIELWTGKQ 610
            ILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTP ++KPIELWTGKQ
Sbjct: 549  ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQ 608

Query: 611  LFSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKA 670
            +FSVL+RP+AS++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKA
Sbjct: 609  IFSVLLRPNASIRVYVTLNVKEKNFK--KGEHGFDETMCINDGWVYFRNSELISGQLGKA 668

Query: 671  T-------LGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPG 730
            T       LGNGNKDGLYS+LLRDY +HAAA CMNRLAKLSARWIG HGFSIGIDDVQPG
Sbjct: 669  TLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPG 728

Query: 731  DQLIKQKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANV 790
            ++L K+++ +I  GY  C ++I  FN GNL  +AG D A+SLEA+IT ILN IREAT   
Sbjct: 729  EELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKA 788

Query: 791  CMQNLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAK 850
            CM  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQQ+V G RAPDGFIDRSLPHF R +K
Sbjct: 789  CMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSK 848

Query: 851  TPAIKEILERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTF 910
            +PA                                                         
Sbjct: 849  SPA--------------------------------------------------------- 908

Query: 911  QLLYLDKYYQAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKAL 970
                      AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA TGYMSRRL+KAL
Sbjct: 909  ----------AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKAL 968

Query: 971  EDLSIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATC-PTDGH 1030
            EDL +HYD++VRNA GCI+QF YGDDGMDPA MEGK GAPLNF RLFLK +ATC P   H
Sbjct: 969  EDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHH 1028

Query: 1031 KILSPSEFSKTVEERLSKNDATPECGCSPAFIGSLKIFLNKYVEAQKKSWGTLLADNESD 1090
              LS  E S+  EE L ++D +    C+ AF+ SL+ F+                     
Sbjct: 1029 TYLSSEELSQKFEEELVRHDKSRV--CTDAFVKSLREFV--------------------- 1088

Query: 1091 VGKSTIGSSDNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQ 1150
               S +G           +V+   +GVT +QL+VF+  C+ RY  KKIEAGTAIG IGAQ
Sbjct: 1089 ---SLLGVKSASP----PQVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQ 1148

Query: 1151 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALKQDDNVNIAR 1210
            SIGEPGTQMTLKTFHFAGVASMN+T GVPRI EIIN +K ISTP+++A L+    +  AR
Sbjct: 1149 SIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSAR 1208

Query: 1211 MVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIILTPKL 1270
             VK RIEKT LGQ+A+ I+++M+S SA + I LD + I +A L +    VK +I+ TP++
Sbjct: 1209 WVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRI 1268

Query: 1271 KLKHEHVNVLDDRKLRVLPQDADRSKLHFNLHFLKNMLPAVVVKGIKTVGRAVIKEEKDK 1330
            KL    + VL D  L + P   D+S+ HFNLH LKN+LP ++V GIKTV R V+ E+ DK
Sbjct: 1269 KLNDNDIRVL-DTGLDITPV-VDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDK 1328

Query: 1331 VRNAKKFSLLV-----EGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEI 1390
            +       L++       T L AVMGT G++G  T SN+++EV + LGIEAAR  II+EI
Sbjct: 1329 M----LAKLIIPCPRWACTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEI 1375

Query: 1391 KYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNA 1436
               M +HGMSIDIRHMMLL D+MT+RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+A
Sbjct: 1389 GTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSA 1375

BLAST of CcUC03G044440 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 718.4 bits (1853), Expect = 1.2e-206
Identity = 508/1545 (32.88%), Postives = 761/1545 (49.26%), Query Frame = 0

Query: 24   KIKSMQFTTFSGSEISKMAEVQVYKGLYYDTTR--KPIDGGLLDPRMGPANKGCKCATCH 83
            K++ +QF   S  EI +M+ + V    + +TT   KP  GGL D R+G  ++  KC TC 
Sbjct: 14   KVRVVQFGILSPDEIRQMSVIHVE---HSETTEKGKPKVGGLSDTRLGTIDRKVKCETCM 73

Query: 84   ANFGDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLYK-DFLRKMRNP 143
            AN  +CPGH+GYL LA P+++VG+  T+L I++C+C +CS+IL +E+ +K     K++NP
Sbjct: 74   ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQAMKIKNP 133

Query: 144  KLEALRKCDLVKKIIKKCTSLT--------------SGNKSMKCSRCGYLNGSVKKAVSM 203
            K       + +KKI+  C + T              S ++ +K SR G      K  +  
Sbjct: 134  K-------NRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLTIEG 193

Query: 204  LGILHYRSRSKDAGVVSEDLRAPYNVSNDILNPFRVLSLFKRMSDEDCELLFLSD---RP 263
            + ++      +      + L  P       L   RVLS+ KR+SD DC+LL  +    RP
Sbjct: 194  MKMIAEYKIQRKKNDEPDQLPEPAE-RKQTLGADRVLSVLKRISDADCQLLGFNPKFARP 253

Query: 264  EKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPKYL- 323
            + +I+  +P+PP  +RPSV+MD +  +E+D+T +L  II+ N ++ ++    N  P ++ 
Sbjct: 254  DWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQ--EKNGAPAHII 313

Query: 324  -ESWDMLQSEVAQLINSDVRGIPFTMQVS-KPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 383
             E   +LQ  +A   ++++ G P   Q S +P+     RLK K+GR RGNL GKRV+F+ 
Sbjct: 314  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 373

Query: 384  RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHL- 443
            RTVI+PDP + I E+ VP  +A  LTYPE VT +NIE+L++ V  GP   PG    +++ 
Sbjct: 374  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 433

Query: 444  -DGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWR 503
             D   R  +   +K     L+ G  VERHL+DGD VLFNRQPSLH+MSIM HR+R+MP+ 
Sbjct: 434  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 493

Query: 504  TLRFNESVCNPYNADFDGDEMNMHVQNN----------------LCTPKNGEILVASTQD 563
            T R N SV +PYNADFDGDEMNMHV  +                + +P+    ++   QD
Sbjct: 494  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 553

Query: 564  FLTSSFLITRKDTFYDRAAF--SLMCSYMGDGMDLVDLPTPALIKPIELWTGKQLFSVLV 623
             L     IT++DTF ++  F  +LM     DG     +P PA++KP  LWTGKQ+F++++
Sbjct: 554  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDG----KVPAPAILKPRPLWTGKQVFNLII 613

Query: 624  RPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGN 683
                ++  Y                + E   + P D  V     EL++G + K TLG  N
Sbjct: 614  PKQINLLRY-----------SAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSN 673

Query: 684  KDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGDQLIKQKQTTILE 743
               L  V+  +    AA   +     L   W+  +GF+IGI D       +++   TI  
Sbjct: 674  -GSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISN 733

Query: 744  GYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRNSPLI 803
                    I  F    L PE G     + E ++ Q+LN  R+   +   ++L   N+   
Sbjct: 734  AKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKA 793

Query: 804  MSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAIKEILERLLR 863
            M   GSKGS INISQM ACVGQQ+V G+R P GF  R+LPHF +    P           
Sbjct: 794  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGP----------- 853

Query: 864  HAVVDVGFEMVILLHLFVVHDILEMMVVTVTCFWQSVSVSLGCNMTFQLLYLDKYYQAKG 923
                                                                    +++G
Sbjct: 854  --------------------------------------------------------ESRG 913

Query: 924  FVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRN 983
            FV NS+  GLT  EFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+ED+ + YD +VRN
Sbjct: 914  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 973

Query: 984  AGGCIVQFCYGDDGMDPAQMEGKSGAPL-----NFERLFL------KAKATCPTDGH--- 1043
            + G ++QF YG+DGMD   +E +    L      F+R F           T  +D H   
Sbjct: 974  SLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLED 1033

Query: 1044 -------KILSPSEFSKTVEERLSKNDATPECGCS----PAFI--------GSLKIFLNK 1103
                   + +  +E+SK   +R          G S    P  I         + KI L K
Sbjct: 1034 LKGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRK 1093

Query: 1104 --------YVEAQKKSWGTLLADNESDVGKSTIGSSDNDDI--------VIRNKVVQNIA 1163
                     V+A  K    LL     D    ++ +  N  +         + +K V    
Sbjct: 1094 ISDMHPVEIVDAVDKLQERLLVVPGDDA--LSVEAQKNATLFFNILLRSTLASKRVLEEY 1153

Query: 1164 GVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1223
             ++    +  +    SR+    +  G  IG + AQSIGEP TQMTL TFH+AGV++ NVT
Sbjct: 1154 KLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1213

Query: 1224 LGVPRIKEIINGAKRISTPIVTAALKQDDNVNI--ARMVKARIEKTNLGQIAKCIQIVMS 1283
            LGVPR++EIIN AKRI TP ++  L  + + +   A+ V+  +E T L  + +  ++   
Sbjct: 1214 LGVPRLREIINVAKRIKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYD 1273

Query: 1284 SRSALIEIKLDMEKIRDAELYVDANV-------------VKQAIILTPKLKLKH--EHVN 1343
                   I+ D E +R      D +V             + + +++  KL +    E +N
Sbjct: 1274 PDPMSTIIEEDFEFVRSYYEMPDEDVSPDKISPWLLRIELNREMMVDKKLSMADIAEKIN 1333

Query: 1344 VLDDRKLRVLPQDADRSKLHFNLH--------------------FLK----NMLPAVVVK 1403
            +  D  L  +  D +  KL   +                     FLK    NML  + ++
Sbjct: 1334 LEFDDDLTCIFNDDNAQKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALR 1393

Query: 1404 GIKTVGRAVIK-------EEKDKVRNAKKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIE 1429
            GI  + +  IK       +E+   + ++++ L  EG  L AVM  E VD   T SNH+IE
Sbjct: 1394 GIPDINKVFIKQVRKSRFDEEGGFKTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIE 1453

BLAST of CcUC03G044440 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 406.4 bits (1043), Expect = 9.9e-113
Identity = 430/1780 (24.16%), Postives = 682/1780 (38.31%), Query Frame = 0

Query: 25   IKSMQFTTFSGSEISKMAEVQVYKGLYYDTTRKPIDGGLLDPRMGPANKGCKCATCHANF 84
            ++S++F+  +  ++ K + ++V   + +D    P  GGL D ++GP +    C +C    
Sbjct: 27   VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNSCGQLK 86

Query: 85   GDCPGHYGYLSLALPVFNVGYFTTILEILKCICKSCSRILLEEKLYKDFLRKMRNPKLEA 144
              CPGH G++ L  P+++   F  +   L+  C  C   + +    +D  R +   KL  
Sbjct: 87   LACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKP---EDVERAVSQLKL-- 146

Query: 145  LRKCDLV-------------KKIIKKCTSLTSGN-------------------------- 204
            + K D+V             K   + C S+ + +                          
Sbjct: 147  IIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAV 206

Query: 205  -------KSMKCSRCGYLNGSVKKAVSMLGILHYRSRSKDAGVVSEDLRA---------- 264
                    S  CSRC  +N  ++K   M G +  R+  KD+ V +  +R           
Sbjct: 207  LKNFMRLSSKSCSRCKGINPKLEK--PMFGWVRMRA-MKDSDVGANVIRGLKLKKSTSSV 266

Query: 265  ------------------------------------PYNVSNDILNPFRVLSLFKRMSDE 324
                                                 +N   D+L P  V ++ K +   
Sbjct: 267  ENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLL-PSEVRNILKHLWQN 326

Query: 325  DCELL-FLSD----RPEKL-----IVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRII 384
            + E   F+ D      EK+      +  V VPP   RP     G    E+  T  L ++I
Sbjct: 327  EHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGLNKVI 386

Query: 385  QQNASVSQELSTSNSQPKYLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKG 444
            + N  +    +    Q K +  W  LQ  V  L +S       T+Q  +  +G  Q L+ 
Sbjct: 387  ESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTA----TVQSQRDSSGICQLLEK 446

Query: 445  KQGRFRGNLCGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQC 504
            K+G FR  + GKRV    R+VISPDP + + ++ +P   A  LTYPERVT  N+EKLR+ 
Sbjct: 447  KEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREA 506

Query: 505  VSNGPDKYPGARMLRHLDGSMR------------SLMISGR------KRLADELKYGEIV 564
            + NGPD +PGA        +M+              ++S R       +  D    G+ V
Sbjct: 507  IINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTV 566

Query: 565  ERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPW-RTLRFNESVCNPYNADFDGDEMNMH- 624
             RH+ DGD+VL NRQP+LH+ S+M H+VRV+   +TLR + + C+ YNADFDGDEMN+H 
Sbjct: 567  HRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHF 626

Query: 625  ---------------VQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFS---- 684
                             N    P NGE L A  QD + SS L+T++DTF D+  F+    
Sbjct: 627  PQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLF 686

Query: 685  -------LMCSYMGDGMDLVDLP---------TPALIKPIELWTGKQLFSVLV------R 744
                   ++ ++ G     V +          TPA++KP+ LWTGKQ+ + ++       
Sbjct: 687  SSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGH 746

Query: 745  PHASMKVYLNL----------TVKEKSYSKVKGNE-KERETMCPNDGFVYFRNSELISGQ 804
            P  +++    L           VK  S    K  E  E      N+  ++ R +E + G 
Sbjct: 747  PPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGV 806

Query: 805  VGKATLGNGNKDGLYSVLLRDYKAHAAAACMNRLAKLSARWIGNHGFSIGIDDV----QP 864
            + KA   +    GL   +   Y ++AA   ++  ++L   ++  HGF+ G+DD+      
Sbjct: 807  IDKAQFAD---YGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDM 866

Query: 865  GDQLIKQKQTTILEGYRDCDKQINLFNTGNLPP------------EAGCDAAQSLEAKIT 924
             ++  KQ Q     G R   K   +     + P            E G  A  SL+  I 
Sbjct: 867  DEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIV 926

Query: 925  QILN-----GIREATANVCMQNLHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRR 984
              LN     G+     +  +     RN   +M+  G+KGS +N  Q+ + +GQQ + G+R
Sbjct: 927  NYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKR 986

Query: 985  APDGFIDRSLPHFRRKAKTPAIKEILERLLRHAVVDVGFEMVILLHLFVVHDILEMMVVT 1044
             P     ++LP F     +P                                        
Sbjct: 987  VPRMVSGKTLPCFHPWDWSP---------------------------------------- 1046

Query: 1045 VTCFWQSVSVSLGCNMTFQLLYLDKYYQAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 1104
                                       +A GF+++ F SGL   E++FH M GREGLVDT
Sbjct: 1047 ---------------------------RAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1106

Query: 1105 AVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYGDDGMDPAQMEGKSGAPLN 1164
            AVKT+ +GY+ R L+K LE L ++YD +VR+A G I+QF YG+DG+D      +S     
Sbjct: 1107 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD----VHRSSFIEK 1166

Query: 1165 FERLFLKAKATCPTDGHKILSPSEFSKTVEERLSKNDATPECGCSPAFIGSLKIFLNKYV 1224
            F+ L +                    K  E+ LS        G S ++I  L I L K  
Sbjct: 1167 FKELTINQDMV-------------LQKCSEDMLS--------GAS-SYISDLPISLKKGA 1226

Query: 1225 EAQKKSWGTLLADNESDVGKSTIGSSDNDDIVIRNKVVQNIAGVTHRQLQVFLDTCLSRY 1284
            E                              V    + + IA    RQ +  L    S++
Sbjct: 1227 E----------------------------KFVEAMPMNERIASKFVRQ-EELLKLVKSKF 1286

Query: 1285 HTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEII-NGAKRIS 1344
                 + G  +G + AQS+GEP TQMTL TFH AG   MNVTLG+PR++EI+   A  I 
Sbjct: 1287 FASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIK 1346

Query: 1345 TPIVTAALKQDDNVNIARMVKARIEKTNLGQIAKCIQIVM-------SSRSALIEIKLDM 1404
            TPI+T  L +      A  +  R+ K  +  I K +++ +       +   ++ ++K+++
Sbjct: 1347 TPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINL 1406

Query: 1405 EKIRDAELYVDAN------------VVKQAIILTPKLKLKH------------------- 1436
             K      + D              + K    +   +K+ H                   
Sbjct: 1407 YKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETD 1466

BLAST of CcUC03G044440 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 89/309 (28.80%), Postives = 150/309 (48.54%), Query Frame = 0

Query: 243 PEKLIVTDVPVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQPKYL 302
           PE +++  +PV P  +RP + ++G +   +DI E  +R+I +N +++  L+TS S P  L
Sbjct: 261 PEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGEL 320

Query: 303 ESWD--MLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 362
                 ++Q  V  L+++ +RG P     +K    F   ++GK+GRFR  L GKRV+++G
Sbjct: 321 VMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSG 380

Query: 363 RTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPGARMLRHLD 422
           R+VI   P+L +    +P  +A             IE  +  V  G        + +HL 
Sbjct: 381 RSVIVVGPSLSLHRCGLPREIA-------------IELFQTFVIRG-------LIRQHLA 440

Query: 423 GS--MRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWR 482
            +  +    I  +K +  E      + + +  G  VL NR P+LHR+ I   +  ++  R
Sbjct: 441 SNIGVAKSQIREKKPIVWE------ILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGR 500

Query: 483 TLRFNESVCNPYNADFDGDEMNMHV----------------QNNLCTPKNGEILVASTQD 532
           T+  +  VC  +NADFDGD+M +HV                  NL +P  G+ +   TQD
Sbjct: 501 TICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 543