CcUC03G043850 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G043850
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionmetallothionein-like protein LSC54
LocationCicolChr03: 1503394 .. 1504755 (-)
RNA-Seq ExpressionCcUC03G043850
SyntenyCcUC03G043850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACACAACAAATCCAACAAGCATTTTGAGAATTAATTAAAATTATTATATAGTTCGAAAAGCAGAAATGGGTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGGGACAGCTGCAACTGCCAATCTGGGTTTGATCTCTCTCTTCCTCTTCTAAAAATTATATTTACTTCCATTTTTTCATTTTATGATATAATTAAATTACTCATACACAATAATTTGTCACTTATATTTTTCATTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTAATTTATCTATGCAGGACCATCTCGGGGTCCATCATCCTTAAGAAGTAAGTAATGAATTTGAGTTTTGTGTTTACAACTACGTGTATTGCAACACTTCTATGGCATTCTACGTTTCAAAAAGGTTAACTTTTAGGAGTGAGGGTTTAGGGATGGCCTTACCAATTGTGATTTGGGCTTATGAGGCCTTTTGGTCGAAAGCTTTGTCTATAACTCACATTGGATGACATAAAAATTCAATGGTAAAAGATTTTCGAAATCATACTTTCATACCCTCGAGAATAAAACTAATGATTGGGGAAGAATGTAACAAAAGTAATTTATTTATTTATTTATTTATTCTGAAAGAAAGGATACTTTATTATGGAGGTGGTGAAAAACATATAGCATATGTAATTTAGTTTTTAGAATTTTAAAAAAGTAAATGCAATCTAAAATTTTAGGAATAAACATTTACTAATTTTCTCCTTAAAACCAATTATATATGAAAGATGAAATAATAATATAAAAATGGTGTGATTGACTTTGCAGAGGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCAACTGCAAGTGAGCCATGGGAAGATGGATAAATGCCCCAAACAACAAAGCTTCTTCGTACAATAAATTGATGAATATATGATCAAACTACAAACTTTGTTTTTCTTTTTCTTTTTTCTTTTTCTTCTTTGTTTGATGAAAATGCAATATTGTAATTAATTAGCCTTGAAAGTCCAAGTTCCATATGGATTTGGGTTTTCTATGGCTTCTTGAAACCTAGTGTGAACTACCTAATATTGCTTTGTTGTAAGTGGGGACTTGGGTTGATAATATATTCATCAAAGTTTCAAGTATGTGTGTTTGAATTTGTGTTTAATATAAATATTTGGTTTTGGTGTCCTCTTAATCTTCT

mRNA sequence

AAAACACAACAAATCCAACAAGCATTTTGAGAATTAATTAAAATTATTATATAGTTCGAAAAGCAGAAATGGGTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGGGACAGCTGCAACTGCCAATCTGGGACCATCTCGGGGTCCATCATCCTTAAGAAAGGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCAACTGCAAGTGAGCCATGGGAAGATGGATAAATGCCCCAAACAACAAAGCTTCTTCGTACAATAAATTGATGAATATATGATCAAACTACAAACTTTGTTTTTCTTTTTCTTTTTTCTTTTTCTTCTTTGTTTGATGAAAATGCAATATTGTAATTAATTAGCCTTGAAAGTCCAAGTTCCATATGGATTTGGGTTTTCTATGGCTTCTTGAAACCTAGTGTGAACTACCTAATATTGCTTTGTTGTAAGTGGGGACTTGGGTTGATAATATATTCATCAAAGTTTCAAGTATGTGTGTTTGAATTTGTGTTTAATATAAATATTTGGTTTTGGTGTCCTCTTAATCTTCT

Coding sequence (CDS)

ATGGGTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGGGACAGCTGCAACTGCCAATCTGGGACCATCTCGGGGTCCATCATCCTTAAGAAAGGTGGATGCAGCTGTGGGAGTAGTTGCTCATGTGACCCATGCAACTGCAAGTGA

Protein sequence

MGSGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSCDPCNCK
Homology
[Close]
BLAST of CcUC03G043850 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSCDPCNCK 50
          MGSGCKCGD+CSCGDSCNCQSG+I+ + IL K GCSCGSSCSCDPCNCK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

[Close]
BLAST of CcUC03G043850 vs. NCBI nr
Match: AAC27529.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 7  CGDNCSCGDSCNCQSGTISGSIILKKG-GCSCGSSCSCDPCNC 49
          CGDNCSCGD+C+C SG     +  KKG GC+CG  C+CDPC C
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

[Close]
BLAST of CcUC03G043850 vs. NCBI nr
Match: AKU19651.1 (metallothionein-like protein [Oxytropis ochrocephala])

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQSGT-----------------ISGSIILKKGGCSCGSSCSC 50
          M S C CG +C+CG +C C+  T                 +   +  + GGCSCGSSC+C
Sbjct: 1  MSSNCGCGSSCNCGSNCTCEGNTTETMIMGVGPAKVQFEDVEMGVAAETGGCSCGSSCTC 60

[Close]
BLAST of CcUC03G043850 vs. NCBI nr
Match: AAC27530.1 (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 26/47 (55.32%), Postives = 27/47 (57.45%), Query Frame = 0 

Query: 2  GSGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSCDPCNC 49
          G  C CGDNCSCG  CNC     + S   K  GC CG  CSCDPC C
Sbjct: 4  GDNCNCGDNCSCGSGCNC-----NRSYAKKDDGCKCGDDCSCDPCTC 45

[Close]
BLAST of CcUC03G043850 vs. NCBI nr
Match: KAF3967927.1 (hypothetical protein CMV_008126 [Castanea mollissima])

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 31/74 (41.89%), Postives = 37/74 (50.00%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQSG-------TISGSII------------------LKKGGC 50
          M S CKCG +C+CG  CNC S        T + +II                   + GGC
Sbjct: 1  MSSSCKCGSSCNCGSGCNCNSNYPVLSEKTSAETIITGVAPAKIQSEGSEMNFGAENGGC 60

[Close]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match: Q41670 (Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-06
Identity = 31/74 (41.89%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 3  SGCKCGDNCSCGDSCNC--QSGTISGS-------IIL------------------KKGGC 50
          SGC CG +C+CGDSC C  +S  +S S       +IL                  K+GGC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEGGC 61

[Close]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match: P43399 (Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.5e-06
Identity = 29/74 (39.19%), Postives = 35/74 (47.30%), Query Frame = 0 

Query: 3  SGCKCGDNCSCGDSCNCQ---------SGTISGSIILKKG------------------GC 50
          SGC CG +C+CGDSC C              + ++IL  G                  GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSGC 61

[Close]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match: P20830 (Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-05
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = 0 

Query: 3  SGCKCGDNCSCGDSCNC--QSGTISGS-------IIL------------------KKGGC 50
          SGC CG +C+CGDSC C  +S  +S S       +IL                  + GGC
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGGC 61

[Close]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match: Q41669 (Metallothionein-like protein 1A OS=Vicia faba OX=3906 GN=MT1A PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.6e-04
Identity = 25/76 (32.89%), Postives = 31/76 (40.79%), Query Frame = 0 

Query: 3  SGCKCGDNCSCGDSCNCQSGT------------------------------ISGSIILKK 49
          SGC CG +C+CGDSC C   +                                 S+  K+
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETKETKETVVLGFGPAKIHFDGAEMSVASKE 61

[Close]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match: Q39458 (Metallothionein-like protein 1 OS=Cicer arietinum OX=3827 PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 6.1e-04
Identity = 25/69 (36.23%), Postives = 33/69 (47.83%), Query Frame = 0 

Query: 2  GSGCKCGDNCSCGDSCN---CQSGTISGSIIL------------------KKGGCSCGSS 50
          GS C CGD C C         ++G  + +++L                  + GGC CGSS
Sbjct: 7  GSSCNCGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGCKCGSS 66

[Close]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-16
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSCDPCNCK 50
          MGSGCKCGD+CSCGDSCNCQSG+I+ + IL K GCSCGSSCSCDPCNCK
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSCGSSCSCDPCNCK 78

[Close]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match: A0A251UNQ3 (Putative metallothionein, family 15, plant OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0136101 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.7e-04
Identity = 28/68 (41.18%), Postives = 33/68 (48.53%), Query Frame = 0 

Query: 5  CKCGDNCSCGDSCNCQS------------------------GTISGSIILKKGGCSCGSS 49
          CKCG NCSCG SCNC S                        G+ + ++     GCSCGSS
Sbjct: 3  CKCGSNCSCGSSCNCNSCDVEKSTTTTIIVDGVAPKMTFAEGSETSTVAESGNGCSCGSS 62

[Close]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match: A0A2U1KC45 (Metallothionein-like protein 1 OS=Artemisia annua OX=35608 GN=CTI12_AA161680 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-04
Identity = 28/72 (38.89%), Postives = 33/72 (45.83%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQS------------------------GTISGSIILKKGGCS 49
          M SGCKCG NCSCG  CNC S                        G+ +  +     GC 
Sbjct: 1  MSSGCKCGSNCSCGSGCNCNSYDVEKSTTTMMIVDGVAPKMTFAEGSETNFVAEGGNGCK 60

[Close]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match: A0A251UM24 (Putative metallothionein-like protein 1 OS=Helianthus annuus OX=4232 GN=MT1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.8e-04
Identity = 29/72 (40.28%), Postives = 32/72 (44.44%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQS------------------------GTISGSIILKKGGCS 49
          M S C CG NCSCG  CNC S                         T + ++     GCS
Sbjct: 1  MSSKCNCGSNCSCGSGCNCNSYDVEKSTTTTIIVDGVAPKMTFVEATETSTVAESGNGCS 60

[Close]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match: A0A2D1VNM4 (Metallothionein type 1 OS=Ipomoea nil OX=35883 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-04
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 0 

Query: 1  MGSGCKCGDNCSCGDSCNCQSGTISGSIILKKG--------------------GCSCGSS 49
          M SGCKCG +C CG +C C+  T + +II  KG                    GC CGS+
Sbjct: 1  MSSGCKCGSDCKCGSNCGCEEVTTTVTII--KGAAPVKLSLEGSSEKATEGGHGCKCGSN 60

[Close]
BLAST of CcUC03G043850 vs. TAIR 10
Match: AT1G07610.1 (metallothionein 1C )

HSP 1 Score: 43.1 bits (100), Expect = 7.4e-05
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 2  GSGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSC-DPCNC 49
          GS C CG +C CGDSC+C+      +   +   CSCGS+CSC   CNC
Sbjct: 3  GSNCGCGSSCKCGDSCSCEK-----NYNKECDNCSCGSNCSCGSSCNC 45

[Close]
BLAST of CcUC03G043850 vs. TAIR 10
Match: AT1G07600.1 (metallothionein 1A )

HSP 1 Score: 41.2 bits (95), Expect = 2.8e-04
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 0 

Query: 3  SGCKCGDNCSCGDSCNCQSGTISGSIILKKGGCSCGSSCSC-DPCNC 49
          S C CG +C CGDSC+C+      +   +   CSCGS+CSC   CNC
Sbjct: 4  SNCGCGSSCKCGDSCSCEK-----NYNKECDNCSCGSNCSCGSNCNC 45

The following BLAST results are available for this feature:
BLAST of CcUC03G043850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022997994.11.5e-1583.67metallothionein-like protein LSC54 [Cucurbita maxima][more]
AAC27529.11.4e-0560.47metallothionein [Mesembryanthemum crystallinum][more]
AKU19651.16.9e-0540.91metallothionein-like protein [Oxytropis ochrocephala][more]
AAC27530.11.5e-0455.32metallothionein [Mesembryanthemum crystallinum][more]
KAF3967927.12.0e-0441.89hypothetical protein CMV_008126 [Castanea mollissima][more]
BLAST of CcUC03G043850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q416702.2e-0641.89Metallothionein-like protein 1B OS=Vicia faba OX=3906 GN=MT1B PE=3 SV=1[more]
P433996.5e-0639.19Metallothionein-like protein 1 OS=Trifolium repens OX=3899 GN=MT1B PE=3 SV=1[more]
P208301.9e-0540.54Metallothionein-like protein 1 OS=Pisum sativum OX=3888 GN=MTA PE=3 SV=1[more]
Q416693.6e-0432.89Metallothionein-like protein 1A OS=Vicia faba OX=3906 GN=MT1A PE=3 SV=1[more]
Q394586.1e-0436.23Metallothionein-like protein 1 OS=Cicer arietinum OX=3827 PE=3 SV=1[more]
BLAST of CcUC03G043850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KD427.2e-1683.67metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P... [more]
A0A251UNQ33.7e-0441.18Putative metallothionein, family 15, plant OS=Helianthus annuus OX=4232 GN=HannX... [more]
A0A2U1KC454.8e-0438.89Metallothionein-like protein 1 OS=Artemisia annua OX=35608 GN=CTI12_AA161680 PE=... [more]
A0A251UM244.8e-0440.28Putative metallothionein-like protein 1 OS=Helianthus annuus OX=4232 GN=MT1 PE=3... [more]
A0A2D1VNM46.3e-0442.65Metallothionein type 1 OS=Ipomoea nil OX=35883 PE=3 SV=1[more]
BLAST of CcUC03G043850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07610.17.4e-0547.92metallothionein 1C [more]
AT1G07600.12.8e-0446.81metallothionein 1A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G043850.1CcUC03G043850.1mRNA