CcUC03G043490 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G043490
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Pentatricopeptide repeat-containing protein
Location	CicolChr03: 1154974 .. 1158163 (-)
RNA-Seq Expression	CcUC03G043490
Synteny	CcUC03G043490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAACAATTGAACCCTAAATGACAAAACCCTCTGTGCTCCCCTCCTCTTCTTCGTGAAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCCAATAATCCGATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCCGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATTTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCCTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGGTTTGTTCCCCCTTCCTTTTCTTCTATATGTTCTGTCCTTTTTGTAGCTCTTTCTGGATATTGACATACATTTTAGATTTTACTTCATGAATCGTCTCAAAAATAGTTAATAGGCTTCTGTAAGTTGATGCTATGATTTTTTTTTCTTCTTAACTGTTATGTTATTGATTGTTATTTACTTTAGGTGAATAACTTTGCTAATTTCTAAGATTATGTTTCTCAGCTTCTAGCTTTCTTAGTATGAATGTGATGTTCTTGACTTTTGCCCTGTCTCTTTTCATGGAGCTATTGTGCAATTTTTGTCAAGTTGCAGCTCTCCCTCTCTTTATGCATGGTAGTAATTGAAGCATGCTAAGGAAGGTCATAGAGGAAGTAAATTCATGTATTGGTGTTCCTCTAAATGATATGATGAGTTGTTTTCCCACTTCCTCTTATATGTTAAGCTTGATTTATGTCGAGGAAGTTGCCTTTGCATTCAAGATTCTTCCATACGAATACTGCTTGTTTCTCCCTTGTTCAACTCTGATCTGCCCCTTGAGTGCTTATCATATCTAGTTCAAACTTTTTGTATGAATTAAGATCTCAAATATGAAATCTATTTCACTCTGGTTGCATGTGGGAACATTTGCCTTTTATATTCTTTTATTTTTCAACTCAAGATTGAATTGATTTTATTTCATGGTGTCTGTGAATCTTACACATTGAATTTTCCAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCGTGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGAGGTATGTTCTATGCAACACTTTTTTCCTCTTTAAATATTTCTTGTCAATTAATGTTGACATTTGTTTTGTTTGTATTCTAAAGGATGGTAGCACTTAGTAAGCAGTCATAGTAGGCCATTCGCCATTGTACGGTTATAAATTCAAAAACCTTAAGTTACTTGTGACATTTAACATCTTACAAGTTTTTAAATGCCAAATATTTTTCACTTTTTCGAAGTAATGGGAAAATGAAAAAAATGTGCCTGTGAAAGAAAGTAAAATTCGTTTGACGAGCATAGGGGAGGTAGGATAAAGAGTTGGCCAGATATAGAGTGGGACGTGTGGATAGTAGTTGAGTTGGAGCCAAGAACTCTCTTAGTCTTGCGGTTCTCTCGTATTGGATCCTTGGGAAGAGGATCAAGTGAGTCATGTGGTCCTTGTAAACAACTTGATGCTATCTTCTTTCAGACCTTTAAATGAAATGCACCAAAATTTTAAAGGAAGGGAAGCTTGATGTTATCTTCTTTCAGCCCTTTAAATGAAATGCATCAAAACTTTAAAGGAAGGGAAATTCATAGATCAACCCCATCGTCTCCGCTCTGTAGAAACTATAAACAGCAAGATCCCCTTTGGATGTCTTCAATATTTAGGGGTTACGAACCAACCATAGAGTTATTCAACAGGTGAGGAGATTGTCCTCCACCATCCCTTTTGTGATAAAGGGCATTGTTTGTGGTAGGTGGGGTGTGCACTATTTTGTGGGGGCTTTGGGGAGAGTGACAATAGAATCTTCAGAGGGTGCGATAGTTCTTTGGACGATGTTTGGTCCTTCGTTAAATTCTACGTTTCTAGGCTCTTTTGTAACTATTTGCTGGAATGGAGCCATTTCTTGTAGTTTGGCGTGTATTCGTCCATTTATTCTCAATTTATTCTCAATGAAATCTGGAGTGCATTGGTTGTCCACACTTTTGTTGGGTTAGTAGATTCTTTTGGAAGAGTATACCATTGTAGAATGTAGAAAGTGTTTAAAGCGCACTGTTATTAGAAAACCTTTGAAACCACTTATATAGGGCAGTTGTTTCTTATTGCTTCACCATCTTTTTCTCTTTTCTATCAACCTCATCAGGGTCTACATCAGATGTCTGTTCTTGTTTCATTGGCCCTGAATTTATCCTAATATACTATACATATGATCTTTTGCTTTTCAATTACCGTCGTATTACGTATTATTTCAGTGAATTAACATGATGGTGTGGATGAATATTACTCTGGTTTCCTGATGCTTGTCCCTGCTGAAGCTGAAAGCAAAGTGTGTGGAGCTTGATGATATGAAACTGCAAGGATATGGAGATGTTATCAATGGCATTTCTCCGGACCGGGGACTTGAGCTTCAAAGAAGATGGTGAAAATACCAAAGCTTGATTCAAATGTAGGTGTTGTTTCTTTTTAAAAGAATGCAGTTTGTTGAAGGATCATTGTCCAGAAATTTTCTATTTAATGAGGAATGTAAATGCCACCGAGAAATACAAATTTGTAACTCTTCCTTCAAACTTATGAATCACAGACACAGATATATACAATAAGGTACGGCGATTTGTTAATTTTTGAAAAACTAAGATACGG

mRNA sequence

AAGAAAACAATTGAACCCTAAATGACAAAACCCTCTGTGCTCCCCTCCTCTTCTTCGTGAAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCCAATAATCCGATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCCGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATTTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCCTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCGTGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGAGTGAATTAACATGATGGTGTGGATGAATATTACTCTGGTTTCCTGATGCTTGTCCCTGCTGAAGCTGAAAGCAAAGTGTGTGGAGCTTGATGATATGAAACTGCAAGGATATGGAGATGTTATCAATGGCATTTCTCCGGACCGGGGACTTGAGCTTCAAAGAAGATGGTGAAAATACCAAAGCTTGATTCAAATGTAGGTGTTGTTTCTTTTTAAAAGAATGCAGTTTGTTGAAGGATCATTGTCCAGAAATTTTCTATTTAATGAGGAATGTAAATGCCACCGAGAAATACAAATTTGTAACTCTTCCTTCAAACTTATGAATCACAGACACAGATATATACAATAAGGTACGGCGATTTGTTAATTTTTGAAAAACTAAGATACGG

Coding sequence (CDS)

ATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCCGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATTTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCCTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCGTGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGA

Protein sequence

MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQRVYDPPEEIFGLR

Homology

[Close]

BLAST of CcUC03G043490 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-133
Identity = 240/255 (94.12%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFASVF+R L RR I D SLPVKSTI+G QPD SRPLWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDVF+YKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. NCBI nr
Match: XP_008457435.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] >KAA0031765.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 471.9 bits (1213), Expect = 3.6e-129
Identity = 232/255 (90.98%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFA VF+R L RR I D+ LPV STI+G QPD SRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ V+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CcUC03G043490 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 464.2 bits (1193), Expect = 7.5e-127
Identity = 226/255 (88.63%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS  KLPI  SVF+R LMRR I DI LPVKST++G QPD SRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462.2 bits (1188), Expect = 2.8e-126
Identity = 225/255 (88.24%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS SKLPI  SVF+R L  R I DISLPVKST++G QPD S+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.7 bits (1184), Expect = 8.3e-126
Identity = 224/255 (87.84%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS SKLPI  SVF+R L  R I DISLPVKST++G QPD S+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MD+AM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.7e-95
Identity = 172/249 (69.08%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 10  KLPIFASVFIRCLMR----RAISDISLPVKSTISGIQPDLSRPLWGF-RLYHDGRPRGPL 69
           K P FAS+F + + R      IS  +L  K+ +  I P   +P   F   +HDGRPRGPL
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPP---KPFTVFVSRFHDGRPRGPL 69

Query: 70  WRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALA 129
           WR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQEE ALA
Sbjct: 70  WRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALA 129

Query: 130 VKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIR 189
           +K+F +I+KQ+WY+PDVFMYKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIR
Sbjct: 130 IKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIR 189

Query: 190 GFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQRV 249
           GFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++  
Sbjct: 190 GFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHA 249

Query: 250 YDPPEEIFG 254
           YDPPEEIFG
Sbjct: 250 YDPPEEIFG 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.1e-47
Identity = 84/181 (46.41%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD+F Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQRVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 120 EVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  V E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-09
Identity = 45/161 (27.95%), Postives = 81/161 (50.31%), Query Frame = 0


Query: 66  RSRKAIGKEALFVI---QGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVA 125
           ++ K   ++A+ +I   +  K   E ++  +K +   VL  L   + A+  E        
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWE-------- 139

Query: 126 LAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEV 185
            A+++F L+R+Q WYKP+V +Y  LI+ L + K+ + A +L++ M  E    + + YT +
Sbjct: 140 SAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTAL 199

Query: 186 IRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL 223
           +  + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 VSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 112 LGELERQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREEN 171
           L +L  +++   A+++F ++R+Q +Y+P    Y  L++ L +S + + A KL++ M EE 
Sbjct: 95  LSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEG 154

Query: 172 LFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLK 220
           L P  + YT ++  + R     DA ++ + MK  P   PD   +  LLK
Sbjct: 155 LEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLK 203

[Close]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.8e-130
Identity = 231/255 (90.59%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLP+FASVF++ L RR I D+ LPVKSTI+  QPD  RP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ V+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 232/255 (90.98%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFA VF+R L RR I D+ LPV STI+G QPD SRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ V+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL
Match: A0A1S3C5H5 (pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN=LOC103497124 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 232/255 (90.98%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFA VF+R L RR I D+ LPV STI+G QPD SRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ V+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.6e-127
Identity = 226/255 (88.63%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS  KLPI  SVF+R LMRR I DI LPVKST++G QPD SRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL+YGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 5.2e-126
Identity = 229/255 (89.80%), Postives = 240/255 (94.12%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIR FS SKLPIFASVF+R L RR I DI LPVKS I+G QPD SRP+ GFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMKSHV RLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDVFMYKDLIIALA SKKMDDAM+LWESMR+E+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQRVYDPPEEIFGLR 256
           DQ VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]

BLAST of CcUC03G043490 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 349.7 bits (896), Expect = 1.9e-96
Identity = 172/249 (69.08%), Postives = 207/249 (83.13%), Query Frame = 0


Query: 10  KLPIFASVFIRCLMR----RAISDISLPVKSTISGIQPDLSRPLWGF-RLYHDGRPRGPL 69
           K P FAS+F + + R      IS  +L  K+ +  I P   +P   F   +HDGRPRGPL
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPP---KPFTVFVSRFHDGRPRGPL 69

Query: 70  WRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALA 129
           WR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQEE ALA
Sbjct: 70  WRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALA 129

Query: 130 VKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIR 189
           +K+F +I+KQ+WY+PDVFMYKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIR
Sbjct: 130 IKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIR 189

Query: 190 GFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQRV 249
           GFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++  
Sbjct: 190 GFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHA 249

Query: 250 YDPPEEIFG 254
           YDPPEEIFG
Sbjct: 250 YDPPEEIFG 255

[Close]

BLAST of CcUC03G043490 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 189.1 bits (479), Expect = 4.3e-48
Identity = 84/181 (46.41%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD+F Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQRVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of CcUC03G043490 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-17
Identity = 60/177 (33.90%), Postives = 90/177 (50.85%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKLEKFMKSHVLRLLK 120
           R PL R R  +  EA+  +Q LKR                      L++ + S   RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMIAVLGELERQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWE 180
            DM+AVL EL RQ E +LA+K+F  IRK+ WYKP V MY D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 222
           +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]

BLAST of CcUC03G043490 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 117 RQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDS 176
           R++EV  A K+F+ + +   ++ +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEV-SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 177 QTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK 220
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L++
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303

[Close]

BLAST of CcUC03G043490 vs. TAIR 10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 120 EVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  V E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

The following BLAST results are available for this feature:

BLAST of CcUC03G043490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895593.1	1.4e-133	94.12	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955...	[more]
XP_008457435.1	3.6e-129	90.98	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] ...	[more]
XP_022964699.1	7.5e-127	88.63	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964...	[more]
XP_023519300.1	2.8e-126	88.24	protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs...	[more]
XP_023521051.1	8.3e-126	87.84	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of CcUC03G043490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	2.7e-95	69.08	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	6.1e-47	46.41	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FMQ1	5.0e-09	35.29	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
Q9FKC3	8.6e-09	27.95	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9SQU6	4.3e-08	30.28	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop...	[more]

BLAST of CcUC03G043490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE9	7.8e-130	90.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]
A0A5A7SRJ7	1.7e-129	90.98	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C5H5	1.7e-129	90.98	pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1HLK1	3.6e-127	88.63	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1E045	5.2e-126	89.80	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]

BLAST of CcUC03G043490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	1.9e-96	69.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	4.3e-48	46.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	5.2e-17	33.90	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT1G77340.1	2.1e-10	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G12100.1	3.6e-10	35.29	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 143..175 e-value: 3.6E-6 score: 24.8 coord: 178..205 e-value: 9.2E-5 score: 20.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 4.1E-10 score: 39.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.599635
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.158661
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..255 e-value: 1.8E-56 score: 192.4
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 4..254
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 4..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G043490.1	CcUC03G043490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding