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CcUC02G040770 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCCATGGCTATGACAGCCTCCTTCCTTCCCACCGCCACCACCAAACAACCCTCCACCGCCGCCCGCCGAGCTCTCGTCATCGCCAAGGCCTCGACCTCTAACCACACCTCCAATGTCAATTTGGAGAGCAAGAATGTGAAGGTGGAGAGCAGGCAAGGGCGGCGGGAGTTGGTGGCAGCCGCTGTCACGGTGGCAGCAGCGACCTTGGCGAAGGCGGCAATGGCGGATGAGCCGCCACGTGGCTCCCCCGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA ATGGCCTCCATGGCTATGACAGCCTCCTTCCTTCCCACCGCCACCACCAAACAACCCTCCACCGCCGCCCGCCGAGCTCTCGTCATCGCCAAGGCCTCGACCTCTAACCACACCTCCAATGTCAATTTGGAGAGCAAGAATGTGAAGGTGGAGAGCAGGCAAGGGCGGCGGGAGTTGGTGGCAGCCGCTGTCACGGTGGCAGCAGCGACCTTGGCGAAGGCGGCAATGGCGGATGAGCCGCCACGTGGCTCCCCCGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA ATGGCCTCCATGGCTATGACAGCCTCCTTCCTTCCCACCGCCACCACCAAACAACCCTCCACCGCCGCCCGCCGAGCTCTCGTCATCGCCAAGGCCTCGACCTCTAACCACACCTCCAATGTCAATTTGGAGAGCAAGAATGTGAAGGTGGAGAGCAGGCAAGGGCGGCGGGAGTTGGTGGCAGCCGCTGTCACGGTGGCAGCAGCGACCTTGGCGAAGGCGGCAATGGCGGATGAGCCGCCACGTGGCTCCCCCGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA MASMAMTASFLPTATTKQPSTAARRALVIAKASTSNHTSNVNLESKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK Homology
BLAST of CcUC02G040770 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa]) HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39 Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0
BLAST of CcUC02G040770 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]) HSP 1 Score: 171.8 bits (434), Expect = 3.2e-39 Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0
BLAST of CcUC02G040770 vs. NCBI nr
Match: XP_004143237.1 (photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]) HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38 Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 0
BLAST of CcUC02G040770 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima]) HSP 1 Score: 143.7 bits (361), Expect = 9.3e-31 Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of CcUC02G040770 vs. NCBI nr
Match: KAG6570402.1 (Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010275.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29 Identity = 88/113 (77.88%), Postives = 92/113 (81.42%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 1.8e-13 Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12 Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 4.5e-12 Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39 Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39 Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy TrEMBL
Match: A0A0A0KIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39 Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 4.5e-31 Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of CcUC02G040770 vs. ExPASy TrEMBL
Match: A0A6J1FY72 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449001 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 4.5e-31 Identity = 85/110 (77.27%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of CcUC02G040770 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein ) HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16 Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 0
BLAST of CcUC02G040770 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T ) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14 Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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