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Overview
Name | CcUC02G040620 |
Type | gene |
Organism | Citrullus colocynthis (Watermelon (PI 537277) v1) |
Description | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; |
Location | CicolChr02: 35889574 .. 35889879 (+) |
RNA-Seq Expression | CcUC02G040620 |
Synteny | CcUC02G040620 |
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGGTAAGGAAAACCCTAAGTTTTCTTCAAAGTTCAATTCTGTTACCTGTCGTCTTCTTATATATCCTTGTTATTCCCTTTTTCCTTTTGTTTCTCGAGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCCCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCATCTGTGA mRNA sequence ATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGGTAAGGAAAACCCTAAGTTTTCTTCAAAGTTCAATTCTGTTACCTGTCGTCTTCTTATATATCCTTGTTATTCCCTTTTTCCTTTTGTTTCTCGAGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCCCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCATCTGTGA Coding sequence (CDS) ATGGCGAGAGATAGCTGTTTGGCTCGAGTTACTGCCGGAGTTGCCGTTGGTGGCGCTGTAGGCGGAGCCGTCGGTAAGGAAAACCCTAAGTTTTCTTCAAAGTTCAATTCTGTTACCTGTCGTCTTCTTATATATCCTTGTTATTCCCTTTTTCCTTTTGTTTCTCGAGTTCCGAGTTCTGGTTATGGTTTGATTGTTGTTCCCCTTCTTCGGTTATTGAGTAGTTATATGTATGGGATGTGTTGGATTAAAGAGTTTGACATAAGCAGGAAGCTGGATAATTGGTCAAGTTGCGTTCATCTGTGA Protein sequence MARDSCLARVTAGVAVGGAVGGAVGKENPKFSSKFNSVTCRLLIYPCYSLFPFVSRVPSSGYGLIVVPLLRLLSSYMYGMCWIKEFDISRKLDNWSSCVHL
Homology
BLAST of CcUC02G040620 vs. TAIR 10
Match: AT3G07910.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 8.9e-05 Identity = 20/25 (80.00%), Postives = 25/25 (100.00%), Query Frame = 0 Query: 1 MARDSCLARVTAGVAVGGAVGGAVG 26 MA++SCLA++TAGVAVGGA+GGAVG Sbjct: 1 MAKNSCLAKITAGVAVGGALGGAVG 25
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
AT3G07910.1 | 8.9e-05 | 80.00 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
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