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CcUC02G040550 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCCCCTTAGTCGGTTGAATTGGGGTCAAAATAATCAAATGAATTAACCCTAGAATTAGATTTCCCTATAAAAGGGACTTCAAATACACAACTTTTGATTTTATCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCATTTCTTCCGGTTCAGAATAATTCTTCAGCATCTCCTTTCTTTTCAAGTTTTGATTTTTGCTGAACAACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGGTTTCTTTCTATCTATTCATTTTCGAAGTTGATCTACTTTCACGTACTTTCTTTCTCCAAGAGAATCCGGGGCGTAAAACTTTGCGTAAGAAATGGTTGTCTTCAATTTGTGTTGATAGTTCTTATTGGAAGTATTGTGTTCTCAAATCTGATTTAGTACTGTTGTCATCTGTTTTTCAAGATTTGCGTTTATTGGGGATCGTGGGTTAGTCTTGTTTTCTTTCATCGTCAAGATTGCGGACATCGGGAGGCTTATTTTCTGCGATTTAGTATCGAATTGAATTGGTTTTTCTTCTTGGTTGTATGGCTTTGGGGAATCATAAGAAGCAGAATCCATTTTTTATGTTCATCCCTTTGGCAGTGATTGGATTGATGTTGTTTCTCTTGCGAATTTGGTCGGTCGCCTGTGCATGGTTTTCTTTATTCTGTAAAGAGGATTTTCGTCCCTTTCAGTTATAGTTGCATATCTATGATTCTGTTCAAGTGTCTGTTTTCGGATATTGGATATTCGCGTTATACTAAGAGGATTTCTAACTTGCTGGATTTGTATGTTCAGTTGGAAATGTAGATCTTTTCTTCTGGTTCAGAATAATTCTTCAGCATCTCCTTTCTTTTCAAGTTTTGATTTGTCATTTGTTTTCCAAGATTAGCGTTTCTTTGGAGCTAATTAAAGAAGTCTCAGATCGTTGGTTTAGTCTTGTTTTCTTTCATTGTCAAGATTAAGGACATCGGGCCCTGCGATGTAATATCTAGGCAAATTATGGTTTAATCGAATTGAATTAGCTTGTGTGCTTTGGTTGTATGGCTATGAGGAATCATAAGAAGCAGAAGGTATTGTTTGTGTTGATCCGTTTTCCAGTAATTGGATTGCTGTTGTTTTTCTTTTGCGAATTTGGCCAGTCGCCTGTGCATGCTTTTCTTTATTCTATAAGGAGGTTAGAGTTGCATATCTATGATTCTGTTTAAGAGTGTTTTGAATATTGGATATTCGCGTATACATACTTCGAGGATTTCTTACTTGCTGGATTTGTATGTTCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGGTTTGTTCCAATTGATTCATCTTTCATATACTTATTAATATTTTTATAGCATGACTTATTCATATGTGTTTTATTTCGTTGTGGCTCTATGGTTGTATTGGAGATGGAGTTTTAAGTTGTTGCGAACGTATTCCCCTGGGAGTCCGCTAAACTTTGTAGGAGAAAATTCACTATATCCATATTGCCTTTGGTGCAATGTTTCTAATTGTACTTGAGGTTGCTCGGATTTAATTGGAAAAGGTATGCCGTTTTAGATTTATAACCTAAGCATCTTGGAGTCAGGGAGTTGTATGGAATGGAGTCTGATGGTGCTTTGACAGATATATCATAAACTAGCAGAAGTCATAGTTAAGTCTTGTGACTCTTGTCTTATTTTGTTGATTGATTATTGAAGTTGAAATGCTTGCTTGGTGGGCCTTGGACAGAATTATATTGTTCTCAGTATTCAGTGATTTATTGTGAGCCTATGAAGCATGTAGTATACCTTAGTTTGGATAAGGTGTTTCAGTGTTTGTAATTTACATCCGTTGGACTGGACACATTCGTTAAATTGGCACATATCAAACGCTGTGTTGAATATTTGTTGGGAACAAGTGCAATAGACACGAATAGAACACGTATTGGAACAATTATTGGCATTTGAACTCAAGCGGTCAAGCATATGTTTGACAAGGCTTGGATGATTGGAAAAAGGCTCGTCACCATGCTTGCCGTTCCAGTGTCTATGCTTCTTTTTTTTCTGTAAGCTAGTTACCCTTTCAGCTCCTCCAAATTATGTGTTCACATACTTTGATGCATTTCATGTCTGTTGACAAGTTTGATTTTATGTTCTTAGACTTGCGTCGAGGAACATTTCTCCTACTGCTGTTCTTGGAAATAGTTTATGTAGTTTTCACTTTCAGCTGGGGAACTTATTAGTAATATTTAATCAGAACAAAAATCGAAGTGGCCAGTGGTTAATGGGATTACCTATTGTTTTTCCAGCCACTGGAGTATTGGAAATACTTTCCTTGTTTGTTTGAGGAATGAGAGTGACCTTTTATAGTTGTACGTATGGCCATTATTTTCTTTTATTTATTCTTTCTTTTACTTTCATGAAGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGGTATGTCCATTCATCATTCTATGGAGATCTTTTATAGTTTATAATTTGAATATCTTTTTAAATTACTGTTCTTATTATATATTGCCTGTGCATTGTTAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATTGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATACTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGATAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGGCAGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGATTTTATGTTTAAAGCTCCTGTATAGAATAAGCTCTGCTCCTTTCCCCTTGTACAGTTCTAAGATTCAACTTACTTTGTATAAATATTGAATCTTAAATTCAATCATAAAAGAATTTTTAGCAGCTAGCATCTAGTTTCATGTAATATAACTTTTCAAAACTCTAGACTCAAACTTAGCTCCACTATATCCATCGAACTAACTTACATGTTTTATGTGCTGTTATTATAGCAACTTATTGAGCATCT AATCCCCTTAGTCGGTTGAATTGGGGTCAAAATAATCAAATGAATTAACCCTAGAATTAGATTTCCCTATAAAAGGGACTTCAAATACACAACTTTTGATTTTATCGTCAAGAACTCCTGGATCGCGAGTAGAGAATATTCTCGAGCATCCTTTCATTTCTTCCGGTTCAGAATAATTCTTCAGCATCTCCTTTCTTTTCAAGTTTTGATTTTTGCTGAACAACTATTTGGGTTCTGTGTAATTTGGAGCGAGAAAGATCGGAGGAGAAACCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATTGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATACTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGATAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGGCAGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGATTTTATGTTTAAAGCTCCTGTATAGAATAAGCTCTGCTCCTTTCCCCTTGTACAGTTCTAAGATTCAACTTACTTTGTATAAATATTGAATCTTAAATTCAATCATAAAAGAATTTTTAGCAGCTAGCATCTAGTTTCATGTAATATAACTTTTCAAAACTCTAGACTCAAACTTAGCTCCACTATATCCATCGAACTAACTTACATGTTTTATGTGCTGTTATTATAGCAACTTATTGAGCATCT ATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATTGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATACTTACCTGGGTGTATCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGATAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGGCAGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGTTTGGCCGGAAATGA MSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDTYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLRAEFAGPSSSREPVTKHASKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK Homology
BLAST of CcUC02G040550 vs. NCBI nr
Match: XP_011657615.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]) HSP 1 Score: 440.7 bits (1132), Expect = 8.5e-120 Identity = 223/245 (91.02%), Postives = 230/245 (93.88%), Query Frame = 0
BLAST of CcUC02G040550 vs. NCBI nr
Match: XP_004140197.1 (uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hypothetical protein Csa_003121 [Cucumis sativus]) HSP 1 Score: 440.7 bits (1132), Expect = 8.5e-120 Identity = 223/245 (91.02%), Postives = 230/245 (93.88%), Query Frame = 0
BLAST of CcUC02G040550 vs. NCBI nr
Match: TYJ96112.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 436.4 bits (1121), Expect = 1.6e-118 Identity = 222/245 (90.61%), Postives = 228/245 (93.06%), Query Frame = 0
BLAST of CcUC02G040550 vs. NCBI nr
Match: XP_016900768.1 (PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo]) HSP 1 Score: 426.8 bits (1096), Expect = 1.3e-115 Identity = 217/240 (90.42%), Postives = 223/240 (92.92%), Query Frame = 0
BLAST of CcUC02G040550 vs. NCBI nr
Match: KAA0061770.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 424.1 bits (1089), Expect = 8.3e-115 Identity = 216/240 (90.00%), Postives = 221/240 (92.08%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy Swiss-Prot
Match: Q99590 (Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 8.6e-06 Identity = 29/92 (31.52%), Postives = 43/92 (46.74%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1) HSP 1 Score: 440.7 bits (1132), Expect = 4.1e-120 Identity = 223/245 (91.02%), Postives = 230/245 (93.88%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy TrEMBL
Match: A0A5D3B8D7 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00750 PE=4 SV=1) HSP 1 Score: 436.4 bits (1121), Expect = 7.8e-119 Identity = 222/245 (90.61%), Postives = 228/245 (93.06%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy TrEMBL
Match: A0A1S4DXR5 (uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=4 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 6.2e-116 Identity = 217/240 (90.42%), Postives = 223/240 (92.92%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy TrEMBL
Match: A0A5A7V3C1 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001490 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 4.0e-115 Identity = 216/240 (90.00%), Postives = 221/240 (92.08%), Query Frame = 0
BLAST of CcUC02G040550 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1) HSP 1 Score: 419.5 bits (1077), Expect = 9.8e-114 Identity = 208/243 (85.60%), Postives = 224/243 (92.18%), Query Frame = 0
BLAST of CcUC02G040550 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein ) HSP 1 Score: 251.9 bits (642), Expect = 5.2e-67 Identity = 143/257 (55.64%), Postives = 176/257 (68.48%), Query Frame = 0
BLAST of CcUC02G040550 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein ) HSP 1 Score: 247.7 bits (631), Expect = 9.9e-66 Identity = 139/240 (57.92%), Postives = 168/240 (70.00%), Query Frame = 0
BLAST of CcUC02G040550 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein ) HSP 1 Score: 240.4 bits (612), Expect = 1.6e-63 Identity = 129/219 (58.90%), Postives = 159/219 (72.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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