CcUC02G036190 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G036190
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSec14p-like phosphatidylinositol transfer family protein
LocationCicolChr02: 32000839 .. 32001376 (-)
RNA-Seq ExpressionCcUC02G036190
SyntenyCcUC02G036190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATGAGCCGCGATGATCAGAAATACCTGGAGGTGGCTCTTGAGATGGTAGAGAGTGAGACCCTTGACGCCCATAACTCTCATGATGGTTTTCGGGGTGGCTTCTGCGGAGGAAATATGGGATAAAAAATATATAAACCCTAAGACGAGGAGGAAGGAAAATAATTAATTATTAGTAGATGTGTATAGAGAAAGGGTAGTGTGTACTATCGGGGCCTCCAAGTTGAGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGACAGTCCAACGGAGGCGGGGTTTGGGGTCGGTGGTGAGGACGAGACCGGAATCGCCTTGGACACACATTGGCCTGTCATGAGAAGTCATAGAGGAAGGTTTCTTGGTGGCATGGAACATTCTGAATAATTTTTCTCTAGAGATCTCTTTGGGTCTTTGTTTTCTCTTTCTTTGTGTGTGTGTGTGTGTGTGCAGCTGAGAGAAAGGCTGAGGCTCAGAGATCTGTCTCTGTGGGAATACTCTGAGGAGATTCAAGAACAAATGCGAGATGGGAAATAG

mRNA sequence

TTGATGAGCCGCGATGATCAGAAATACCTGGAGGTGGCTCTTGAGATGGTAGAGAGTGAGACCCTTGACGCCCATAACTCTCATGATGGTTTTCGGGATGTGTATAGAGAAAGGGTAGTGTGTACTATCGGGGCCTCCAAGTTGAGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGACAGTCCAACGGAGGCGGGGTTTGGGGTCGGTGGTGAGGACGAGACCGGAATCGCCTTGGACACACATTGGCCTCTGAGAGAAAGGCTGAGGCTCAGAGATCTGTCTCTGTGGGAATACTCTGAGGAGATTCAAGAACAAATGCGAGATGGGAAATAG

Coding sequence (CDS)

TTGATGAGCCGCGATGATCAGAAATACCTGGAGGTGGCTCTTGAGATGGTAGAGAGTGAGACCCTTGACGCCCATAACTCTCATGATGGTTTTCGGGATGTGTATAGAGAAAGGGTAGTGTGTACTATCGGGGCCTCCAAGTTGAGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCGACAGTCCAACGGAGGCGGGGTTTGGGGTCGGTGGTGAGGACGAGACCGGAATCGCCTTGGACACACATTGGCCTCTGAGAGAAAGGCTGAGGCTCAGAGATCTGTCTCTGTGGGAATACTCTGAGGAGATTCAAGAACAAATGCGAGATGGGAAATAG

Protein sequence

LMSRDDQKYLEVALEMVESETLDAHNSHDGFRDVYRERVVCTIGASKLSDGVDEALVELDSPTEAGFGVGGEDETGIALDTHWPLRERLRLRDLSLWEYSEEIQEQMRDGK
Homology
[Close]
BLAST of CcUC02G036190 vs. NCBI nr
Match: GER47657.1 (Sec14p-like phosphatidylinositol transfer family protein [Striga asiatica])

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-04
Identity = 23/42 (54.76%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 33 DVYRERVVCTIGASKLSDGVDEALVELDSPTEAGFGVGGEDE 75
          ++ ++  + T+GA++L DG+ +ALVEL+SP+EAGFGVGGED+
Sbjct: 4  EMVKDAYIHTVGATELGDGIYKALVELNSPSEAGFGVGGEDK 45

[Close]
BLAST of CcUC02G036190 vs. ExPASy TrEMBL
Match: A0A5A7QTA6 (Sec14p-like phosphatidylinositol transfer family protein OS=Striga asiatica OX=4170 GN=STAS_24775 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 23/42 (54.76%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 33 DVYRERVVCTIGASKLSDGVDEALVELDSPTEAGFGVGGEDE 75
          ++ ++  + T+GA++L DG+ +ALVEL+SP+EAGFGVGGED+
Sbjct: 4  EMVKDAYIHTVGATELGDGIYKALVELNSPSEAGFGVGGEDK 45

The following BLAST results are available for this feature:
BLAST of CcUC02G036190 vs. NCBI nr
Match NameE-valueIdentityDescription
GER47657.16.0e-0454.76Sec14p-like phosphatidylinositol transfer family protein [Striga asiatica][more]
BLAST of CcUC02G036190 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G036190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QTA62.9e-0454.76Sec14p-like phosphatidylinositol transfer family protein OS=Striga asiatica OX=4... [more]
BLAST of CcUC02G036190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G036190.1CcUC02G036190.1mRNA