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CcUC02G035920 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTCTCATCTCTTTTCTTTCACTTCTTGAAAAAGAAAACCTCTAACTCGCATTTTCAAAACCCAATTACACCAGAAAATTGGGGTAGAAATTAAAACTATCTCAATTTGCATTCTTTGAAGAGAAATGAAGGAGATCAGTGGAAGAAAACAAGGCATATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGTTAGTAACTCAAATTATGTTTTCTTATATTACAAATTGTTTTTAATTTAACCAACTGGAGACTCTCAATTTTTCGTCTAATTAACTAATGGAACTATACTTTGGTTGACGGTTAAATTAGTTAGCTCCTTTGTCAAAGACAGTAGAGAGGTAGGTTTTAAAATTGTCTACGATTGTATGAACAATGAACCAACAATCCTACCATCCTATTATCCTATTATTTCTACAAACCACACAAATTTACAAAAGAGCCCACATTAACTTACGGACAAAAGAAGGAGAAAAAAAAAAAAAAAATAAAATAAAAAAAAAAAATAAAAAACGTCCCAACAAAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAACAAAAATAAAATAAAATAAAAAAAAAACCAACATTAAATTACGGAAAAAAAAAAGAGAAAAAAAAAAAAAAAAAAAAACCCACGAGTTAAATTAGGATTAAACAACTAATATACATAAATTCGACTTCTAATAGGAAACACTGAATAAAGTTGAATAATTAAATAAGAGGGTAATGTAAATGTTAGGTATCTTTTATTTATTTCCGTTATAGTGGTTGATTACAGTTGAGGAGCCCACCCTATAGACAAATTTTTTATTTTATTTTATTTTTTTTTAAAAAAAAGTGTCTCAAATATTTCTACTTTTTGAAAAAGCAAACCCCAAAATTGGTTGGAAGACCAATTCAGGAGATTCCTTAGCGTATGAAGGAGTAAAGGGCATGGTTTAATTTGTACTAAATAATTAATCAAACCATGCTTTAATTAACCAAGCCTTTGGTTAATTAACACTTAACTGAAGCAAAGTATAATTTATGTTTTAATTAATTGTTTAATCCCCTCAACTTTAACCCCATTAGCCTTATAACTTTTCGAGAAATTACAAGATCAACCTGAACCTTTTTTCCCCTAGCTCCGAAAGAAAGGCAAGATTCTAAATGTTTTTATTTATTTCACTATATTATAAATCAATATTATTTTGTCATTCTAACGTCACCATGACATCTAAAATCCTTTCTTCTTATAAAAGCAATGTAAATAGTTGGTATGAGTACGTTTCTTTTAAATATTGTAATAACTAATAAAATATATTTTGTTGCATTTCTGTTTGTAGCTATCTTTGTGCTACTCACTCGATTTCAATCCCAATTTACCATGTGGTAAACTTATTTCACTTTTACATGATTGGTAAAAAAAAAATTCTCAATAGACTCCTAAAGATGGTTTATCTTTAGGTTTACCATTCTTCAATGAAATTTTTTTTCCCTAAATACTCACTTGGATTTTATGGACTATGATATATTTATATTAGATTATAAAGTTCTATCTCAAAACTAATTGACGAGAGAGAATGAAATAACCATATTTCTTATATAGATTGTGACGTTTTTCCTTGGTTAATAGGAGCTACCAGAGCAGCAACGAAGTGATGCAGTTAGTTCGATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAAGTGGTTCACATGAGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCGACTGCGGGCCACTCACCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG TTTCTCATCTCTTTTCTTTCACTTCTTGAAAAAGAAAACCTCTAACTCGCATTTTCAAAACCCAATTACACCAGAAAATTGGGGTAGAAATTAAAACTATCTCAATTTGCATTCTTTGAAGAGAAATGAAGGAGATCAGTGGAAGAAAACAAGGCATATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAAGTGGTTCACATGAGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCGACTGCGGGCCACTCACCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG ATGAAGGAGATCAGTGGAAGAAAACAAGGCATATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAAGTGGTTCACATGAGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCGACTGCGGGCCACTCACCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG MKEISGRKQGISLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC Homology
BLAST of CcUC02G035920 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida]) HSP 1 Score: 297.0 bits (759), Expect = 9.7e-77 Identity = 150/173 (86.71%), Postives = 152/173 (87.86%), Query Frame = 0
BLAST of CcUC02G035920 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus]) HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75 Identity = 149/173 (86.13%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of CcUC02G035920 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa]) HSP 1 Score: 284.6 bits (727), Expect = 5.0e-73 Identity = 145/173 (83.82%), Postives = 147/173 (84.97%), Query Frame = 0
BLAST of CcUC02G035920 vs. NCBI nr
Match: XP_023533072.1 (LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 258.8 bits (660), Expect = 2.9e-65 Identity = 139/173 (80.35%), Postives = 144/173 (83.24%), Query Frame = 0
BLAST of CcUC02G035920 vs. NCBI nr
Match: XP_022149611.1 (LOB domain-containing protein 4 [Momordica charantia]) HSP 1 Score: 258.8 bits (660), Expect = 2.9e-65 Identity = 137/173 (79.19%), Postives = 145/173 (83.82%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 4.0e-49 Identity = 113/175 (64.57%), Postives = 127/175 (72.57%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2) HSP 1 Score: 145.6 bits (366), Expect = 4.7e-34 Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.1e-33 Identity = 84/170 (49.41%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2) HSP 1 Score: 129.8 bits (325), Expect = 2.7e-29 Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27 Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 5.2e-76 Identity = 149/173 (86.13%), Postives = 151/173 (87.28%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73 Identity = 145/173 (83.82%), Postives = 147/173 (84.97%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65 Identity = 139/173 (80.35%), Postives = 144/173 (83.24%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65 Identity = 137/173 (79.19%), Postives = 145/173 (83.82%), Query Frame = 0
BLAST of CcUC02G035920 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65 Identity = 139/173 (80.35%), Postives = 144/173 (83.24%), Query Frame = 0
BLAST of CcUC02G035920 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 ) HSP 1 Score: 195.7 bits (496), Expect = 2.8e-50 Identity = 113/175 (64.57%), Postives = 127/175 (72.57%), Query Frame = 0
BLAST of CcUC02G035920 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35 Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of CcUC02G035920 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 ) HSP 1 Score: 144.4 bits (363), Expect = 7.5e-35 Identity = 84/170 (49.41%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of CcUC02G035920 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 ) HSP 1 Score: 129.8 bits (325), Expect = 1.9e-30 Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 0
BLAST of CcUC02G035920 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28 Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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