CcUC02G035160 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035160
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	CicolChr02: 30892425 .. 30893003 (+)
RNA-Seq Expression	CcUC02G035160
Synteny	CcUC02G035160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTGAAAGAGGAGGATCAAGCAAAGAATACGGAGAAGGATCGTCGAGCTCGCCTCCAACGACGACAACCCCAAGTCGTTACGAGTCGCAAAAACGACGAGATTGGAACACTTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTAGCACTGTCTCAATGCAACTTCAACCATGTGTTGGAGTTTCTAAGGTACTTAGATCAATTTGGGAAGACAAAAGTTCATGTCCAAGGTTGTATGTTTTACGGGCAGCCAGAACCACCTGCCCCTTGCACCTGCCCGTTAAAACAAGCTTGGGGCAGCCTTGATGCTTTAATAGGGCGTTTAAGGGCAGCTTATGAAGAAAATGGAGGTTCCCCTGAAAGTAATCCTTTTGCAAGTGCTTCTATAAGGGTTTATTTAAGAGAAGTAAGAGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTATAAAAAGAAGAAGAAGAGCAACAAGATGACAACCAATAATACCAATCTTCTTGTTGTTGATGATTCGACTAATAATACTTCTTCTTCTTCAAATTCTTCTTCCATCATGCACTTTTCAACTCCTTAA

mRNA sequence

ATGTCAGGTGAAAGAGGAGGATCAAGCAAAGAATACGGAGAAGGATCGTCGAGCTCGCCTCCAACGACGACAACCCCAAGTCGTTACGAGTCGCAAAAACGACGAGATTGGAACACTTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTAGCACTGTCTCAATGCAACTTCAACCATGTGTTGGAGTTTCTAAGGTACTTAGATCAATTTGGGAAGACAAAAGTTCATGTCCAAGGTTGTATGTTTTACGGGCAGCCAGAACCACCTGCCCCTTGCACCTGCCCGTTAAAACAAGCTTGGGGCAGCCTTGATGCTTTAATAGGGCGTTTAAGGGCAGCTTATGAAGAAAATGGAGGTTCCCCTGAAAGTAATCCTTTTGCAAGTGCTTCTATAAGGGTTTATTTAAGAGAAGTAAGAGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTATAAAAAGAAGAAGAAGAGCAACAAGATGACAACCAATAATACCAATCTTCTTGTTGTTGATGATTCGACTAATAATACTTCTTCTTCTTCAAATTCTTCTTCCATCATGCACTTTTCAACTCCTTAA

Coding sequence (CDS)

ATGTCAGGTGAAAGAGGAGGATCAAGCAAAGAATACGGAGAAGGATCGTCGAGCTCGCCTCCAACGACGACAACCCCAAGTCGTTACGAGTCGCAAAAACGACGAGATTGGAACACTTTTGGGCAATACTTGAAGAATCAAAGACCACCAGTAGCACTGTCTCAATGCAACTTCAACCATGTGTTGGAGTTTCTAAGGTACTTAGATCAATTTGGGAAGACAAAAGTTCATGTCCAAGGTTGTATGTTTTACGGGCAGCCAGAACCACCTGCCCCTTGCACCTGCCCGTTAAAACAAGCTTGGGGCAGCCTTGATGCTTTAATAGGGCGTTTAAGGGCAGCTTATGAAGAAAATGGAGGTTCCCCTGAAAGTAATCCTTTTGCAAGTGCTTCTATAAGGGTTTATTTAAGAGAAGTAAGAGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTATAAAAAGAAGAAGAAGAGCAACAAGATGACAACCAATAATACCAATCTTCTTGTTGTTGATGATTCGACTAATAATACTTCTTCTTCTTCAAATTCTTCTTCCATCATGCACTTTTCAACTCCTTAA

Protein sequence

MSGERGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNSSSIMHFSTP

Homology

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BLAST of CcUC02G035160 vs. NCBI nr
Match: XP_038900865.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 177/186 (95.16%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 8   SSKEYGEGSSSSPPTT-TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR 67
           SSKEYGEGSSSSPPTT TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR
Sbjct: 2   SSKEYGEGSSSSPPTTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR 61

Query: 68  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNP 127
           YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNP
Sbjct: 62  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNP 121

Query: 128 FASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNSSSI 187
           FASASIRVYLREVRECQAKARGIPYKKKKKSNK   NNTNLL VDDSTNNTS    SSSI
Sbjct: 122 FASASIRVYLREVRECQAKARGIPYKKKKKSNK-ANNNTNLL-VDDSTNNTS----SSSI 181

Query: 188 MHFSTP 193
           MHFSTP
Sbjct: 182 MHFSTP 181

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BLAST of CcUC02G035160 vs. NCBI nr
Match: XP_008448236.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016900524.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >TYK04855.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 6.1e-89
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MSGE---RGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60
           MSGE      SSKEYGEGSS+SPPT TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKM----TTNNTNLLVVDDS 180
           NGGSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKSNK       NNTN L++DDS
Sbjct: 121 NGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDS 180

Query: 181 -TNNTSSSSNSSSIMHFSTP 193
            T N  SSS+SSSIMHFSTP
Sbjct: 181 TTTNNISSSSSSSIMHFSTP 200

[Close]

BLAST of CcUC02G035160 vs. NCBI nr
Match: XP_023534180.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 8.8e-88
Identity = 172/193 (89.12%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MSGERGGSSKEYGEGSSSSPP-TTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFN 60
           MS ERG   KEYGEGSSSSPP TTTTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFN
Sbjct: 1   MSSERG---KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+G
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSS 180
           GSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKSNK +  NTN    DDST NT S
Sbjct: 121 GSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKASNTNTN---HDDSTTNTCS 180

Query: 181 SSNSSSIMHFSTP 193
           SS+SS +MHFSTP
Sbjct: 181 SSSSSGMMHFSTP 187

[Close]

BLAST of CcUC02G035160 vs. NCBI nr
Match: XP_022947237.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970867.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >KAG6604771.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034898.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.0 bits (850), Expect = 3.3e-87
Identity = 171/193 (88.60%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MSGERGGSSKEYGEGSSSSPP-TTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFN 60
           MS ERG   KEYGEGSSSSPP TTTTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFN
Sbjct: 1   MSSERG---KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+G
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSS 180
           GSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKS+K +  NTN    DDST NT S
Sbjct: 121 GSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTN---HDDSTTNTCS 180

Query: 181 SSNSSSIMHFSTP 193
           SS+SS +MHFSTP
Sbjct: 181 SSSSSGMMHFSTP 187

[Close]

BLAST of CcUC02G035160 vs. NCBI nr
Match: KAA0062179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 4.8e-86
Identity = 176/203 (86.70%), Postives = 181/203 (89.16%), Query Frame = 0


Query: 1   MSGE---RGGSSKEYGEGSSSSPPT-TTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC 60
           MSGE      SSKEYGEGSS+SPPT  TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC 60

Query: 61  NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE 120
           NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE
Sbjct: 61  NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSPESNPFASASIRVYLREVRECQAKARGIPY--KKKKKSNKM----TTNNTNLLVV 180
           ENGGSPE+NPFASASIRVYLREVRECQAKARGIPY  KKKKKSNK       NNTN L++
Sbjct: 121 ENGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKKKSNKQQQPTNNNNTNNLLI 180

Query: 181 DDS-TNNTSSSSNSSSIMHFSTP 193
           DDS T N  SSS+SSSIMHFSTP
Sbjct: 181 DDSTTTNNISSSSSSSIMHFSTP 203

[Close]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.7e-68
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 4   ERGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLE 63
           ERG   K   E S S PP   TPSRYESQKRRDWNTFGQYLKNQRPPV +S C+ NHVL+
Sbjct: 6   ERG---KSLMESSGSEPP--VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 65

Query: 64  FLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPE 123
           FLRYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEENGG PE
Sbjct: 66  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 125

Query: 124 SNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNS 183
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKK              +DS++++SS S S
Sbjct: 126 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGR---EDSSSSSSSFSFS 177

[Close]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.8e-59
Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 13  GEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFG 72
           G    SSPP   TPSRYESQKRRDWNTF QYLKN +PP+ALS+C+  HV+EFL+YLDQFG
Sbjct: 18  GPSFVSSPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFG 77

Query: 73  KTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASI 132
           KTKVHV  C ++G  +PP+PC+CPLKQAWGSLDALIGRLRAAYEENGG P+SNPFA+ ++
Sbjct: 78  KTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 137

Query: 133 RVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNL 168
           R+YLREVRE QAKARGIPY+KKK+    T     +
Sbjct: 138 RIYLREVRESQAKARGIPYEKKKRKRPPTVTTVRV 170

[Close]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.8e-59
Identity = 113/167 (67.66%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 19  SPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKVHV 78
           SPP     SRYESQKRRDWNTF QYL+NQ+PPV +SQC  NH+L+FL+YLDQFGKTKVH+
Sbjct: 31  SPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHI 90

Query: 79  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVYLRE 138
            GC+F+GQ EP   C CPLKQAWGSLDALIGRLRAA+EENGG PE NPFA   IRV+LRE
Sbjct: 91  HGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLRE 150

Query: 139 VRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNSSS 186
           VR+ QAKARG+PYKK+KK  K     ++    +D T  TSSSSN +S
Sbjct: 151 VRDSQAKARGVPYKKRKKRKKRNPMKSH--DGEDGTTGTSSSSNLAS 195

[Close]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 17  SSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKV 76
           +++P      SRYESQKRRDWNTF QYL+N RPP+ L++C+  HV+EFLRYLDQFGKTKV
Sbjct: 20  AAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 79

Query: 77  HVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVYL 136
           H  GC FYGQP PP PC CPL+QAWGSLDALIGRLRAAYEE+GG+PESNPFA+ ++R+YL
Sbjct: 80  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 139

Query: 137 REVRECQAKARGIPYKKKKK 157
           REVR+ QAKARGIPY+KKK+
Sbjct: 140 REVRDSQAKARGIPYEKKKR 159

[Close]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 102/140 (72.86%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 17  SSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKV 76
           +++P      SRYESQKRRDWNTF QYL+N RPP+ L++C+  HV+EFLRYLDQFGKTKV
Sbjct: 20  AAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 79

Query: 77  HVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVYL 136
           H  GC FYGQP PP PC CPL+QAWGSLDALIGRLRAAYEE+GG+PESNPFA+ ++R+YL
Sbjct: 80  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 139

Query: 137 REVRECQAKARGIPYKKKKK 157
           REVR+ QAKARGIPY+KKK+
Sbjct: 140 REVRDSQAKARGIPYEKKKR 159

[Close]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL
Match: A0A1S4DX19 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103490491 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.0e-89
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MSGE---RGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60
           MSGE      SSKEYGEGSS+SPPT TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKM----TTNNTNLLVVDDS 180
           NGGSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKSNK       NNTN L++DDS
Sbjct: 121 NGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDS 180

Query: 181 -TNNTSSSSNSSSIMHFSTP 193
            T N  SSS+SSSIMHFSTP
Sbjct: 181 TTTNNISSSSSSSIMHFSTP 200

[Close]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL
Match: A0A5D3C0I4 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00410 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.0e-89
Identity = 176/200 (88.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MSGE---RGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60
           MSGE      SSKEYGEGSS+SPPT TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCN 60

Query: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120
           FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE
Sbjct: 61  FNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE 120

Query: 121 NGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKM----TTNNTNLLVVDDS 180
           NGGSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKSNK       NNTN L++DDS
Sbjct: 121 NGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKQQQPTNNNNTNNLLIDDS 180

Query: 181 -TNNTSSSSNSSSIMHFSTP 193
            T N  SSS+SSSIMHFSTP
Sbjct: 181 TTTNNISSSSSSSIMHFSTP 200

[Close]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL
Match: A0A6J1I0C7 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111469714 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 171/193 (88.60%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MSGERGGSSKEYGEGSSSSPP-TTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFN 60
           MS ERG   KEYGEGSSSSPP TTTTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFN
Sbjct: 1   MSSERG---KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+G
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSS 180
           GSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKS+K +  NTN    DDST NT S
Sbjct: 121 GSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTN---HDDSTTNTCS 180

Query: 181 SSNSSSIMHFSTP 193
           SS+SS +MHFSTP
Sbjct: 181 SSSSSGMMHFSTP 187

[Close]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL
Match: A0A6J1G5W8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111451160 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 171/193 (88.60%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MSGERGGSSKEYGEGSSSSPP-TTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFN 60
           MS ERG   KEYGEGSSSSPP TTTTPSRYESQKRRDWNTFGQYLKNQRPPVAL+QCNFN
Sbjct: 1   MSSERG---KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEE+G
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHG 120

Query: 121 GSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSS 180
           GSPE+NPFASASIRVYLREVRECQAKARGIPYKKKKKS+K +  NTN    DDST NT S
Sbjct: 121 GSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKSSKASNTNTN---HDDSTTNTCS 180

Query: 181 SSNSSSIMHFSTP 193
           SS+SS +MHFSTP
Sbjct: 181 SSSSSGMMHFSTP 187

[Close]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL
Match: A0A5A7V919 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005640 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 176/203 (86.70%), Postives = 181/203 (89.16%), Query Frame = 0


Query: 1   MSGE---RGGSSKEYGEGSSSSPPT-TTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC 60
           MSGE      SSKEYGEGSS+SPPT  TTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC
Sbjct: 1   MSGEGVVGDRSSKEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQC 60

Query: 61  NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE 120
           NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE
Sbjct: 61  NFNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSPESNPFASASIRVYLREVRECQAKARGIPY--KKKKKSNKM----TTNNTNLLVV 180
           ENGGSPE+NPFASASIRVYLREVRECQAKARGIPY  KKKKKSNK       NNTN L++
Sbjct: 121 ENGGSPETNPFASASIRVYLREVRECQAKARGIPYKKKKKKKSNKQQQPTNNNNTNNLLI 180

Query: 181 DDS-TNNTSSSSNSSSIMHFSTP 193
           DDS T N  SSS+SSSIMHFSTP
Sbjct: 181 DDSTTTNNISSSSSSSIMHFSTP 203

[Close]

BLAST of CcUC02G035160 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-69
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 4   ERGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLE 63
           ERG   K   E S S PP   TPSRYESQKRRDWNTFGQYLKNQRPPV +S C+ NHVL+
Sbjct: 6   ERG---KSLMESSGSEPP--VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 65

Query: 64  FLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPE 123
           FLRYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEENGG PE
Sbjct: 66  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 125

Query: 124 SNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNS 183
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKK              +DS++++SS S S
Sbjct: 126 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGR---EDSSSSSSSFSFS 177

[Close]

BLAST of CcUC02G035160 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-69
Identity = 135/180 (75.00%), Postives = 146/180 (81.11%), Query Frame = 0


Query: 4   ERGGSSKEYGEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLE 63
           ERG   K   E S S PP   TPSRYESQKRRDWNTFGQYLKNQRPPV +S C+ NHVL+
Sbjct: 6   ERG---KSLMESSGSEPP--VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 65

Query: 64  FLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPE 123
           FLRYLDQFGKTKVHV GCMFYGQPEPPAPCTCPL+QAWGSLDALIGRLRAAYEENGG PE
Sbjct: 66  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 125

Query: 124 SNPFASASIRVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNS 183
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKK              +DS++++SS S S
Sbjct: 126 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGR---EDSSSSSSSFSFS 177

[Close]

BLAST of CcUC02G035160 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-60
Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 13  GEGSSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFG 72
           G    SSPP   TPSRYESQKRRDWNTF QYLKN +PP+ALS+C+  HV+EFL+YLDQFG
Sbjct: 18  GPSFVSSPP--ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFG 77

Query: 73  KTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASI 132
           KTKVHV  C ++G  +PP+PC+CPLKQAWGSLDALIGRLRAAYEENGG P+SNPFA+ ++
Sbjct: 78  KTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAV 137

Query: 133 RVYLREVRECQAKARGIPYKKKKKSNKMTTNNTNL 168
           R+YLREVRE QAKARGIPY+KKK+    T     +
Sbjct: 138 RIYLREVRESQAKARGIPYEKKKRKRPPTVTTVRV 170

[Close]

BLAST of CcUC02G035160 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-60
Identity = 113/167 (67.66%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 19  SPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTKVHV 78
           SPP     SRYESQKRRDWNTF QYL+NQ+PPV +SQC  NH+L+FL+YLDQFGKTKVH+
Sbjct: 31  SPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHI 90

Query: 79  QGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVYLRE 138
            GC+F+GQ EP   C CPLKQAWGSLDALIGRLRAA+EENGG PE NPFA   IRV+LRE
Sbjct: 91  HGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLRE 150

Query: 139 VRECQAKARGIPYKKKKKSNKMTTNNTNLLVVDDSTNNTSSSSNSSS 186
           VR+ QAKARG+PYKK+KK  K     ++    +D T  TSSSSN +S
Sbjct: 151 VRDSQAKARGVPYKKRKKRKKRNPMKSH--DGEDGTTGTSSSSNLAS 195

[Close]

BLAST of CcUC02G035160 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-58
Identity = 103/141 (73.05%), Postives = 120/141 (85.11%), Query Frame = 0


Query: 16  SSSSPPTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRYLDQFGKTK 75
           SSS    T   SRYE+QKRRDWNTFGQYL+N RPP++LS+C+  HVLEFLRYLDQFGKTK
Sbjct: 36  SSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTK 95

Query: 76  VHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNPFASASIRVY 135
           VH   C F+G P PPAPC CPL+QAWGSLDALIGRLRAA+EENGGSPE+NPF + ++R+Y
Sbjct: 96  VHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLY 155

Query: 136 LREVRECQAKARGIPYKKKKK 157
           LREVR+ QAKARGI Y+KKK+
Sbjct: 156 LREVRDSQAKARGISYEKKKR 176

The following BLAST results are available for this feature:

BLAST of CcUC02G035160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900865.1	1.2e-89	95.16	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_008448236.1	6.1e-89	88.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
XP_023534180.1	8.8e-88	89.12	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947237.1	3.3e-87	88.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970...	[more]
KAA0062179.1	4.8e-86	86.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]	[more]

BLAST of CcUC02G035160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	4.7e-68	75.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LMK2	6.8e-59	69.68	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9ZVA0	6.8e-59	67.66	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	1.5e-58	72.86	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.5e-58	72.86	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of CcUC02G035160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DX19	3.0e-89	88.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3C0I4	3.0e-89	88.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1I0C7	1.6e-87	88.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1G5W8	1.6e-87	88.60	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7V919	2.3e-86	86.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CcUC02G035160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	3.4e-69	75.00	Protein of unknown function (DUF640)	[more]
AT2G42610.2	3.4e-69	75.00	Protein of unknown function (DUF640)	[more]
AT1G07090.1	4.9e-60	69.68	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.9e-60	67.66	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.0e-58	73.05	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..141 e-value: 5.4E-65 score: 217.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 28..155 score: 79.416801
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..192
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 9..165
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 9..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G035160.1	CcUC02G035160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus