CcUC02G034450 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G034450
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 30277518 .. 30278621 (+)
RNA-Seq ExpressionCcUC02G034450
SyntenyCcUC02G034450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTCTTTTCACTGTTCCCCATCTTCACAAAACAGACAAAACAAACCGGAAATGAAGTAGCTCCATTTTCTCTCTCTCTTTATATATATACCAATCAACAAATGCTTCCCAAAAAAGTTCATTGGATTCACATCTATTTTCTCCAATTCTCTCCAGAAGAAAAAAAAAAAAAATTCATCAAATTAATCAAAACCACAAAGTTTAAATCTTTTCTTGGTTCTCATAGCCATCATTATTGCTCTAAAAGCACAAGCTTTTCTTCATACATTCCAAATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCGAGGTATGTTATACCAATAATTAATTTCCTCAACTAAGTTTCCAAGTTGGGTTGTGTTTTTGTTTTTGTTTTGAATGTTTCGGCTTTTGATTTTTGATTTTTGGTAAATTAAGTTTATAGACACTGTTTTTACTTGTACTTTTCTTTGTTTCGTTATTTACTTTCTACTAATATTTTCAAAAGTTAAGTTAAGTTTTGAAAACAGAAAAAAAAGTAGCGTTTAAAAGCTCATTTTTGTTAAAATTTAAATGTCTTTTTAACCAAAGATGAAAACAAATATGAAGATAAAAACAAAAAGCTAAAAATAAAATTGATATCGAATGAGTCTAAATTAATTTCGAATGATTATAAGTATCTGTCAATGGGTTTTTGAACATGTAATTGTTATAACATCATCACTTACAAATAAGTTATTATAAGTCACACAAAACACGTTTTTATATACATAGAAAGTTATTGAGTCCTATGTTAACTGAAAAAAAAAATTGCTTTTTTTTTTTTTTTTTTCCTTGAAGGGATTAGGTTGTTGGAGAAAGGAATCAACAAAGAGTATAAGAAAAATGGAGCTGTCTTGGGTGGTAAAAATGGTGGAGATTTATTGACGACAATGAAGAAGAGAGCCCCAATCAGGGCTTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTAGATTTTTATTATTATTATTTATATGGAATTATTTGAGGCGTACATAGAAACCGA

mRNA sequence

ATGATTGCCATCATTATTGCTCTAAAAGCACAAGCTTTTCTTCATACATTCCAAATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCGAGGGATTAGGTTGTTGGAGAAAGGAATCAACAAAGAGTATAAGAAAAATGGAGCTGTCTTGGGTGGTAAAAATGGTGGAGATTTATTGACGACAATGAAGAAGAGAGCCCCAATCAGGGCTTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTAGATTTTTATTATTATTATTTATATGGAATTATTTGAGGCGTACATAGAAACCGA

Coding sequence (CDS)

ATGATTGCCATCATTATTGCTCTAAAAGCACAAGCTTTTCTTCATACATTCCAAATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTTATCATGTCTCAAGCTCGAGGGATTAGGTTGTTGGAGAAAGGAATCAACAAAGAGTATAAGAAAAATGGAGCTGTCTTGGGTGGTAAAAATGGTGGAGATTTATTGACGACAATGAAGAAGAGAGCCCCAATCAGGGCTTTAAGAAAACCATATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTAG

Protein sequence

MIAIIIALKAQAFLHTFQMKLSSMAVLLLFLIMSQARGIRLLEKGINKEYKKNGAVLGGKNGGDLLTTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH
Homology
BLAST of CcUC02G034450 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-17
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 19 MKLSSMAVLLLFLIMSQARGIRLLEKGINKEYKKNGAVLGGKNGGDLLTTMKKRAPIRAL 78
          MK SSMAVLLLFLI+S+A GIRLL+K ++KE K        +NGGDLL TMK RAP +A 
Sbjct: 1  MKPSSMAVLLLFLIISEAEGIRLLDKRMSKEDK--------RNGGDLLGTMKWRAPNKAW 60

Query: 79 RKPYSHWLPGIQEDYH 95
          RKPYSHWLPGIQEDYH
Sbjct: 61 RKPYSHWLPGIQEDYH 68

BLAST of CcUC02G034450 vs. NCBI nr
Match: KAE8126159.1 (hypothetical protein FH972_020903 [Carpinus fangiana])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 23  SMAVLLLFLIMS-QARGIRL----LEKGINKEYKKNG-AVLGG----KNGGDLLTTMKKR 82
           ++++LLL L++S +A+GIRL    +  G  K+++ +G A++ G    K+G     TMKKR
Sbjct: 6   ALSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKR 65

Query: 83  APIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
              R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 66  VS-RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

BLAST of CcUC02G034450 vs. NCBI nr
Match: KAG6769267.1 (hypothetical protein POTOM_024887 [Populus tomentosa])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 0

Query: 24  MAVLLLFLIMSQARGIRL-------------LEKGINKEYKKNGAVLGG----KNGGDLL 83
           +++LLL  ++ QA+GIRL              EK  +KE   +G VLG     K G    
Sbjct: 7   VSLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKEKSNDGGVLGEAILCKEG---- 66

Query: 84  TTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
            TM+KR      +K   HWLP I EDY+GPR+HK +HH
Sbjct: 67  -TMEKRVSKSVSKKFSHHWLPSIHEDYYGPRNHKPKHH 99

BLAST of CcUC02G034450 vs. NCBI nr
Match: XP_024445403.1 (uncharacterized protein LOC112324937 [Populus trichocarpa])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 0

Query: 24  MAVLLLFLIMSQARGIRLLEKGIN--------------KEYKKNGAVLG------GKNGG 83
           +++LLL  ++ +A+GIR LEKG                KE   NG VLG       ++  
Sbjct: 7   VSLLLLSFLLQEAQGIR-LEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCKEEHCT 66

Query: 84  DLLTTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
             +T+ +KR    A +    HWLP I EDY+GPR+HK +HH
Sbjct: 67  GTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

BLAST of CcUC02G034450 vs. NCBI nr
Match: RQP03046.1 (hypothetical protein POPTR_018G119850 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 5.6e-04
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 0

Query: 24  MAVLLLFLIMSQARGIRLLEKGIN--------------KEYKKNGAVLG------GKNGG 83
           +++LLL  ++ +A+GIR LEKG                KE   NG VLG       ++  
Sbjct: 7   VSLLLLSFLLQEAQGIR-LEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCKEEHCI 66

Query: 84  DLLTTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
             +T+ +KR    A +    HWLP I EDY+GPR+HK +HH
Sbjct: 67  GTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

BLAST of CcUC02G034450 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 24  MAVLLLFL-IMSQARGIRLLEKGINKEYKKNGAVLGGKNGGDLLTTMKKRAPIRALRKPY 83
           MAVLLLFL IM QA+GIRLLEKG++KEYKK+G  L  KNGGD L TMKKRAPIRALRKPY
Sbjct: 1   MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 84  SHWLPGIQEDYHGPRSHKSRHH 105
           SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61  SHWLPGIQEDYHGPRSHKSRHH 82

BLAST of CcUC02G034450 vs. ExPASy TrEMBL
Match: A0A5N6RX03 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 23  SMAVLLLFLIMS-QARGIRL----LEKGINKEYKKNG-AVLGG----KNGGDLLTTMKKR 82
           ++++LLL L++S +A+GIRL    +  G  K+++ +G A++ G    K+G     TMKKR
Sbjct: 6   ALSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKR 65

Query: 83  APIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
              R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 66  VS-RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

BLAST of CcUC02G034450 vs. ExPASy TrEMBL
Match: A0A6M2ES64 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 25  AVLLLFLIMSQARGIRL-------------LEKGINKEYKKNGAVLGGK---NGGDLLTT 84
           ++LLL  ++ QA+GIRL              EK  +KE K +G VLG       G    T
Sbjct: 8   SLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKE-KSDGGVLGEAILCKEGQCTGT 67

Query: 85  MKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
           M+KR      +K   HWLP I EDY+GPR+HK  HH
Sbjct: 68  MEKRVSKSVSKKSSHHWLPSIHEDYYGPRNHKPNHH 102

BLAST of CcUC02G034450 vs. ExPASy TrEMBL
Match: A0A3N7G9N2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G119850 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-04
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 0

Query: 24  MAVLLLFLIMSQARGIRLLEKGIN--------------KEYKKNGAVLG------GKNGG 83
           +++LLL  ++ +A+GIR LEKG                KE   NG VLG       ++  
Sbjct: 7   VSLLLLSFLLQEAQGIR-LEKGFMQVRAQKVQGDKSSLKERSANGGVLGEAILCKEEHCI 66

Query: 84  DLLTTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 105
             +T+ +KR    A +    HWLP I EDY+GPR+HK +HH
Sbjct: 67  GTITSTEKRVSKSASKNSSHHWLPSIHEDYYGPRNHKPKHH 106

BLAST of CcUC02G034450 vs. ExPASy TrEMBL
Match: A0A0D2U6Z9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.0e-04
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 23  SMAVLLLFLI-MSQARGIRLLE--KGINKEYKKNGAVLGGKNG--GDLLTTMKKRAPIRA 82
           ++++L+LF+I +S  +GIRL +  K    +  + GA++   NG  GD+L   +       
Sbjct: 7   AVSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTK 66

Query: 83  LRKPYSHWLPGIQEDYHGPRSHKSRHH 105
            RK + HWLP I EDY+GPR H+ RHH
Sbjct: 67  KRKSH-HWLPSIHEDYYGPRKHRPRHH 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586348.19.8e-1769.74Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... [more]
KAE8126159.13.5e-0644.57hypothetical protein FH972_020903 [Carpinus fangiana][more]
KAG6769267.15.1e-0539.80hypothetical protein POTOM_024887 [Populus tomentosa][more]
XP_024445403.13.3e-0436.63uncharacterized protein LOC112324937 [Populus trichocarpa][more]
RQP03046.15.6e-0436.63hypothetical protein POPTR_018G119850 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ484.1e-2985.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1[more]
A0A5N6RX031.7e-0644.57Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1[more]
A0A6M2ES641.9e-0540.63Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
A0A3N7G9N22.7e-0436.63Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G119850 PE=4 ... [more]
A0A0D2U6Z96.0e-0439.08Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G034450.1CcUC02G034450.1mRNA