CcUC02G032930 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G032930
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L27-like
Location	CicolChr02: 28637943 .. 28638610 (+)
RNA-Seq Expression	CcUC02G032930
Synteny	CcUC02G032930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATACACTACGTATACAATCATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTCATCTAGAACAAGTTGGTGTCTGTCATGTTACTTTGACTGCGTATTTTATGATTACAATGTTTGTTGAATCAAATCTCAGATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGGTCAGTGGCAAGGAAACAAATCACATTGTCTTAAACTAGAACTGAATTTCTATTGATTGAAACTGTTTTGTTGTGAACTTATTTCACGGAGAGTTGTTCCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTCCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACATGA

mRNA sequence

GATACACTACGTATACAATCATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTCATCTAGAACAAATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGGTCAGTGGCAAGGAAACAAATCACAGAGTTATTCCTGGTAACATTATCGTCCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACATGA

Coding sequence (CDS)

ATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTCATCTAGAACAAATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGGTCAGTGGCAAGGAAACAAATCACAGAGTTATTCCTGGTAACATTATCGTCCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACATGA

Protein sequence

MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT

Homology

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BLAST of CcUC02G032930 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-70
Identity = 139/163 (85.28%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVT VPVYSSFS        +GAA GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFS--------DGAATGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT 164
           EGCV FEKHKLSGRKWVHVIPKEGHVLHP+YATTSTSPELKTT
Sbjct: 121 EGCVNFEKHKLSGRKWVHVIPKEGHVLHPIYATTSTSPELKTT 147

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BLAST of CcUC02G032930 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 275.0 bits (702), Expect = 4.1e-70
Identity = 139/162 (85.80%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFS        +G+A GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFS--------DGSAGGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKT 163
           EGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYATT  SPELKT
Sbjct: 121 EGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of CcUC02G032930 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 139/163 (85.28%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFS        +GA  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFS--------DGATAGLNLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT 164
           EG VKFEKHKLSGRKWVHVIPK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 EGNVKFEKHKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of CcUC02G032930 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 138/162 (85.19%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSF         +G+A GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSF--------IDGSAGGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKT 163
           EGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYATT  SPELKT
Sbjct: 121 EGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of CcUC02G032930 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 4.6e-69
Identity = 137/162 (84.57%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSF         +G+A GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSF--------IDGSAGGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKT 163
           EGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA+T  SPELKT
Sbjct: 121 EGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYASTDISPELKT 146

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BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-23
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK  GS++NGRDS+ K LGVKKFGGE         VI GNIIVRQRGTR+HPGD VGI
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEA--------VIAGNIIVRQRGTRWHPGDNVGI 61

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVIP 142
           GKDHTLFAL +G V F++ K + R +V VIP
Sbjct: 62  GKDHTLFALSKGMVSFQR-KANNRSYVSVIP 83

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BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-23
Identity = 59/91 (64.84%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK  GS++NGRDS+ K LGVKKFGGE         VI GNIIVRQRGTR+HPGD VGI
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGE--------SVIAGNIIVRQRGTRWHPGDNVGI 61

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVIP 142
           GKDHTLFAL EG V F++ K   R +V VIP
Sbjct: 62  GKDHTLFALSEGKVSFQR-KAGNRSYVSVIP 83

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BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK  GSTKNGRDS+ K LGVK+FGGE         V+ GNIIVRQRGTRFH GD +GI
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGE--------SVLAGNIIVRQRGTRFHAGDNMGI 61

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVI 141
           GKDHTLFALK+G V+F+      RK+V ++
Sbjct: 62  GKDHTLFALKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot
Match: Q6G0T7 (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.3e-22
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK  GS++NGRDS+ K LGVKKFGGE         VI GNII+RQRGTR+HPGD VGI
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGET--------VIAGNIIIRQRGTRWHPGDNVGI 61

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVI 141
           GKDHTLFAL  G V F++ K + R +V V+
Sbjct: 62  GKDHTLFALSNGVVSFQR-KANNRSYVSVV 82

[Close]

BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot
Match: A1URM7 (50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / NCTC 12138 / KC583) OX=360095 GN=rpmA PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.4e-22
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK  GS++NGRDS+ K LGVKKFGGE         VI GNII+RQRGTR+HPG+ VGI
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEA--------VIAGNIIIRQRGTRWHPGENVGI 61

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVIP 142
           GKDHTLF+L  G V F + K++ R +V VIP
Sbjct: 62  GKDHTLFSLANGTVSF-RTKVNNRSYVSVIP 83

[Close]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.0e-70
Identity = 139/162 (85.80%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFS        +G+A GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFS--------DGSAGGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKT 163
           EGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYATT  SPELKT
Sbjct: 121 EGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.8e-70
Identity = 139/163 (85.28%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFS        +GA  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFS--------DGATAGLNLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT 164
           EG VKFEKHKLSGRKWVHVIPK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 EGNVKFEKHKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.8e-70
Identity = 139/163 (85.28%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFS        +GA  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFS--------DGATAGLNLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT 164
           EG VKFEKHKLSGRKWVHVIPK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 EGNVKFEKHKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.6e-70
Identity = 138/162 (85.19%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSF         +G+A GLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSF--------IDGSAGGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKT 163
           EGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYATT  SPELKT
Sbjct: 121 EGCVKFEKHKLSGRKWVHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL
Match: A0A6J1DS22 (uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023867 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.2e-68
Identity = 138/163 (84.66%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTK 60
           MLNIA  FCKRLNVKDLVTNVPVYSSFS        +GAAVGLSLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFS--------DGAAVGLSLLFRRWATKKTAGSTK 60

Query: 61  NGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALK 120
           NGRDSKPKNLGVKKFGGE        RVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALK
Sbjct: 61  NGRDSKPKNLGVKKFGGE--------RVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALK 120

Query: 121 EGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELKTT 164
           EGC+KFEKHKLSGRKWVHVIPKEGHVLHPVYA  ST+ ELKTT
Sbjct: 121 EGCIKFEKHKLSGRKWVHVIPKEGHVLHPVYA--STASELKTT 145

[Close]

BLAST of CcUC02G032930 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-55
Identity = 108/163 (66.26%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 2   LNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTKN 61
           LN AA+ C+R+++++L+T VP YS      GSS ++G++ GLSL+F+RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYS------GSSISDGSSSGLSLVFKRWATKKTAGSTKN 63

Query: 62  GRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 121
           GRDS PK LGVKKFGGE         VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE
Sbjct: 64  GRDSNPKFLGVKKFGGE--------SVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 123

Query: 122 GCVKFEKHKLSGRKWVHVIPKEGHVLHPVY--ATTSTSPELKT 163
           G V+FEK K++GRKW+HV P  GHVLHP+Y  A  + S +LKT
Sbjct: 124 GRVRFEKSKITGRKWIHVDPTGGHVLHPIYTKAAAAQSTKLKT 152

[Close]

BLAST of CcUC02G032930 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 102/160 (63.75%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 2   LNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTKN 61
           LN AA+ C+R+++++L+T VP Y+      GSS ++G++ GLSL+ +RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYT------GSSISDGSSSGLSLVLKRWATKKTAGSTKN 63

Query: 62  GRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 121
           GRDS PK LGVKKFGGE         VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE
Sbjct: 64  GRDSNPKFLGVKKFGGE--------SVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 123

Query: 122 GCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELK 162
           G V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K
Sbjct: 124 GRVRFEKSKITGRKWIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]

BLAST of CcUC02G032930 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 102/160 (63.75%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 2   LNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTKN 61
           LN AA+ C+R+++++L+T VP Y+      GSS ++G++ GLSL+ +RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYT------GSSISDGSSSGLSLVLKRWATKKTAGSTKN 63

Query: 62  GRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 121
           GRDS PK LGVKKFGGE         VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE
Sbjct: 64  GRDSNPKFLGVKKFGGE--------SVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 123

Query: 122 GCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELK 162
           G V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K
Sbjct: 124 GRVRFEKSKITGRKWIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]

BLAST of CcUC02G032930 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 102/160 (63.75%), Postives = 124/160 (77.50%), Query Frame = 0


Query: 2   LNIAATFCKRLNVKDLVTNVPVYSSFSGKDGSSRTNGAAVGLSLLFRRWATKKTAGSTKN 61
           LN AA+ C+R+++++L+T VP Y+      GSS ++G++ GLSL+ +RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYT------GSSISDGSSSGLSLVLKRWATKKTAGSTKN 63

Query: 62  GRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 121
           GRDS PK LGVKKFGGE         VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE
Sbjct: 64  GRDSNPKFLGVKKFGGE--------SVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKE 123

Query: 122 GCVKFEKHKLSGRKWVHVIPKEGHVLHPVYATTSTSPELK 162
           G V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K
Sbjct: 124 GRVRFEKSKITGRKWIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]

BLAST of CcUC02G032930 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 51  ATKKTAGSTKNGRDSKPKNLGVKKFGGEVSGKETNHRVIPGNIIVRQRGTRFHPGDYVGI 110
           A KK AGSTKNGRDS  + LGVK +G +V+         PG IIVRQRGT+FH G  VGI
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAK--------PGAIIVRQRGTKFHAGKNVGI 118

Query: 111 GKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKE 144
           GKDHT+F+L +G VKFEK     RK + V P+E
Sbjct: 119 GKDHTIFSLIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of CcUC02G032930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877023.1	3.2e-70	85.28	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_022970580.1	4.1e-70	85.80	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_016901663.1	1.2e-69	85.28	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]
XP_022964702.1	1.6e-69	85.19	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
KAG6583414.1	4.6e-69	84.57	hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC02G032930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6G507	3.0e-23	63.74	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
A9IM57	3.0e-23	64.84	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
B4RZH4	2.5e-22	61.11	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q6G0T7	4.3e-22	61.11	50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=...	[more]
A1URM7	7.4e-22	60.44	50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / NCTC ...	[more]

BLAST of CcUC02G032930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I390	2.0e-70	85.80	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A5A7TXR2	5.8e-70	85.28	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	5.8e-70	85.28	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A6J1HP14	7.6e-70	85.19	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]
A0A6J1DS22	3.2e-68	84.66	uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of CcUC02G032930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	1.8e-55	66.26	Ribosomal protein L27 family protein	[more]
AT2G16930.2	1.3e-53	63.75	Ribosomal protein L27 family protein	[more]
AT2G16930.1	1.3e-53	63.75	Ribosomal protein L27 family protein	[more]
AT2G16930.3	1.3e-53	63.75	Ribosomal protein L27 family protein	[more]
AT5G40950.1	2.1e-19	56.99	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 51..139 e-value: 1.6E-30 score: 103.0
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 51..139 e-value: 1.1E-32 score: 111.9
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 3..162
None	No IPR available	GENE3D	2.40.50.100		coord: 55..154 e-value: 1.9E-27 score: 97.5
None	No IPR available	PANTHER	PTHR15893:SF9	50S RIBOSOMAL PROTEIN L27-LIKE	coord: 3..162
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 51..139
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 91..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G032930.1	CcUC02G032930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome