Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCCGTCTCAAAAAAATTAAATTCCGACGTCAATCTGATTCTGAGTCTTCCTTGGAAGTGAAAGGAAGCTCCGTTAAACCCTAACAATGGCGATCGTTAGTCCCCAACAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATGTTGATGGCGTTCGGTGGCTTCCACCGCTCTCCGCATTTAGCCGGTTTGCCACCATTGCCCTTTACGACTCTGATTCTGACTCATCCTCCATTGAAATTCACTCGGTGGCTCAAAAGCCACTGGATATAGCTCCTCATTCGACATGGATATCACCTTCAAGAGTGTCTTCCCTTAAAACCTCTCAACTCTACCAAAATCCTCTTGTTTTCGCTTCCACTTATACAGGTTCTCTTCATGTTTTATCTGTCGAGCCAATGGAAGCGTCGATCGACTCGGAGCTCTCGGTGCCCGAGAAGATGTTGCACGACGTACCTATTTCATGTGTCGATGTGACGGACGGGGGAGGTGAATGTCTGACTGTTTCGGAAGATGGACGAGTGAATTTGGTGAGCGTTGGAGAATCTGGATTGAATTATCGTCGGATTTTCGATAGTAATGGGTTGGTGTCGTATACCGCAGTGAAATGGGCATCGCCTACTGAGTTTGCGACTGGAGGTTGTGGCTTTAGCTTGCAATGGTGGGATCAGAGAAAGCCCGGTGGAGCAGTTTCTCAGTTTAAGGCCGATTGGTACGTGAATTTGTTTATCTTCCCCGAGACCTCTCTTATACATTTGAACATTTAGCATCTAGAACTAGGATAGAGTTGTAGGAAAGACCCAGCTTTCTGAAACTGGAAGTGGCTTACATTTGGTAAATTAAAGGTTGTGGCTGTATGAGAGCCTTGCTACATTACGATTGTAGAAAAATTAAGAAGTCATTGCTGCTTGTATGTACTGTAGATGAAAGAATAATTGGTTATCAAAGAGTCTCTGGGTTGACTATAATATTTAGGATACGAAAATTTGATAGTGCGGAATCTTCAATAGTATAAAGTGCCGAAGTTGATAAACAGATGTGCTGAATTCTTTCTGCCAATGTTGCAGGGCTTCTGGTATAGTTCACTGCATTGATATCCATCCATCACGAAAGCATACTTGTTTGGTAAAATCTGTTACCTTTTTTTCTTATTTTTACATGATACTCAAGCAGGCAAAGTCACGTTTGTTTATATATATTCTGCAAAAGATCTTTGACTGTAGACTTGTGCTTTCTTTTTAAACTTAATATATATACGAAGAAATGGTGCTTTCTTTTTAAACTTAATATGTATACGAAGAAATGATTTCATTGATAAATGAAAAGGAGTAGAACTCCAAACACCTAAAGGAGAATTACAATAAGGTCTCCAATTGGAAATAAAAAAGTATAAGTTGTAAACTATCATTGGTTGGCCTAGTGGTAAAAATGAGACATAGTCTCCATAAATGACTAAGAGGTGAATGATTCAATCCATGGTGGCCACCTACTTAGGAATTAATTTCTTATGAGTTTCCTTGCCACCCAAATGTTGTAGGATTAGGCGGGTTGTCTCTCTCTCTCTTTTTTTCTTTTTTAATAAAAAGATAAGCTGTAATAAACAAACATTTTCCTCGCTTTACACTAGAAGAAAGTAGTAGAAAGAACTATATACATAACATGATCAAAAGAAGAGGAGGTATCCTTGAAAAGACGACCATTACGTTCAACCCAAAGAATGCCAAAAGAAAGCCTGCATGAGGGCTAACCACAACACCTTCTGTGAATCATGAAGAGGATATCTCACCAAGAAAGTAGCAAGTAGATGAAAAACACGGTTAGGGAGCTGCAAAGACCAACCAAAATCATCCAGAATCACAAGCCAAAAAGGGAAGCAAAAGGACAATGCATAAAGAGATGGTTAGGAGTCTCATCAGTAGAGTTGCATACAGCACACTAGGTAGGGACAAGTGCATATAAGACATTCACTATTGCAACCTCCCTGCCATATTGATAGCACCAAGACTAAGCTCCGAAAGAAATTTGGATCATGATCCTTCCAAATCATCATATAAAGATCTTTCGAAAGAAGATATGCAAGATTCACCAAATCTCCCACAAGCAATTTCACATAGTATTTCATAGAAGGATCGAGAGGCCACATCTGTGAATTAGGAGAGTGCCAAAAGTGGTATGAGGACAAAAGATGAGAAAGATTAGCTCACTCAATAGTTTCCAAGTCATTGAAATTTCTGTGCAAGCTTAAATCTTGAGCACTCTGACTTCAGAACCCACACCTTAGCCACCGTAGGATCAAAATGAAGAGCAAGATTAAAAAGCTGAGGGAAGGCAATCATAATAGGGCGACATCTAAGCCAAGGGATCTTCTAAAGAAAAGTAGAGGTTCCATTACCAAGACAATGTTGAGCACGACTTGCAACATAATGACTAGTCTGATAAATGAAATGCTTAAAAGGACTGAATAGAATAAGTCTGGGCCAACCTCCTCCCATCAAAGACACATAATACCTAGCATTCATAAGCTTCCGCCATAAGGCACTCTCCTCTATATGAAACCTCCGAGTCCACTTGGTAAAGCGTAATTATGATGCCGAAAATTTCCTATGCCTATACCACCCATCTATTTTCGAAGATAAATAATCTCCGAATTCACATTATGCATATTGCCATCACCACGAGGGCCTTACCAAAAACAATCTCGTGTCAATTTGTCTAGAATCTTTGTAACATTGGCAGGAGCAAGAAACAAAGATAAATAATTAGTTGGCATACTAGCTAGAGTAACTTGAATAAGCGCATGCCTACCTCCTTATGAAATAAAAACATACTTCCAATTATGAAGCTTGTGCTGGATGTGCTCAATGATAGGCTGCCAAAATGATGTAAGTCTTAGAATTACCACCCAAGGGAAGACCTAGGTAGGTAGATGGCAGTGACCTTGTTTGCAACCAAATGTAGACAACAGCCAATCTATCTCAGAATCACCAACATGGATCCCTTGCAACTCACCCTTAGAGAGATTGATTTTTAAACCTAGGCCCTTTAAAAAGATATTAAAAATCTCAAAAAGATGTACCGAGGTCGTTGAAACCAAAATGGTGTCATCGGACTTGTCATAATATTACCTAGATGAGTACTATGGGCCCTAAGCTGACTAAGGCATTCTCTAAAACCAATATAAATAAGAAGCGCAAGAGAGGATCACCTTGATGAACTCCATGAGACGAGCCACTTGTATTTTCGTCACCCCCATTGAGCCACTTCAATTTGCAGTATTAATGTCAATAAACATGCTTTTTCGTTGTTAATAATTCAATATGTTCTCAAAGATTCCTATGAGAGATAGCTAATCATCATATAAAGGACAAGTGCCTTCCAAACTTGAAATTGTGGGTTATTTGCAAAGGGTGCTGAAGGAAGAGGCAAGCTAGTCAAGAGCTTTCTAGGACAGTGAGATGGATTTGGTGGATAAGGATAATCTTCCTTTCGGTAATCTTTGCCGGAGTGCCCCTTGAGGATTCATAAATGGCTATAGAGAAGTTTTTGTAATCAATAAGGATTGATCGGGTGGTGACGGTCTATAAAGAATTGGTTACGGTGAGAGGCATGGTGGCTGGAGATGATTATGGCCTAAGATGAGGAAAGAGGAAAGAGGAGAGAGGGCGCTTCATTACATTAGATATCGGTTTCAAGTCTTGTTGCAAAATTTTTGAACTTAATATTTCTATCCTAAAACTTTGTGAGAGATATTTTCTTTACTCTCTACCATTCATGATATAATGTAAAAAATGGTACGATACCAAACGATGAAAAAACCTGAGTGATAATTAGGAACTATTTGATTACATGAGCTACTAAGCCACAAACACTAAAACTCCCAAGTCCATTTGATTTCAACCCTAAGGTTAGGTTAGACATGGAGAGCCTTAACATCAAAATCTCAAGAGAAAGATCAAGTTCTTGGCCCTAAAGTCGAACACTCCACAAGATTGAATGATTAATCCTACTTGAATGTTCTTGGCATGCAACTCAAGACATGAATATACAAGATGTTGTTGGCTAAACTTGAAAGGAAAAGTGAAAAAGGCTAAAACTCAATTCATCATTTTCTATCTTCAACAACTTAGTGTCTAATGGCGAGGCTTTAAATGGCTTCCCAACAAAATCCTAAATGCCACATCATCAACATGACAAAAGGACTAAGATACCCTGGCCCCTTTTAGTATGTTTTAGAAAGGATAAAATTGAATCAAAATTATTAAATAAAAATATGAATGACAATCTAAAGACCACGGCAGTTCATACCAACTCAGTTTGGATAGTTGCTAAATGAGCTATTTGTCAAACTTCTCATAGGTCTTCTTGATCTTACTCTTAGTAGATTACTTCGACAGATTTATTGAGCTAATTAATGAAATTGAATCTCACACACACGCGCACATACATGTTGCGCATGTACTATTTTATGTGAACTGATGTTGTCTACTTTACTTGTTGTAGTGTTAAGATCTCTAGTTCTAACTGAAAGTGTGTGTTGTCCCCTACCTGTGAAAATTGGTTTCTTATCTAAAAGTGCTGTGAGGGTTTTGTTCCATCTTTCTTATTCTGCCCTTATTGATGAGCTGCGATATTAGAGTGTTTATTATTCCCCATGTTAGGCAGGGGGCTCTTTTGGTACTGTTTTTGCCTGGGATTTGAGGTCACAACAGCAGCCTATCATTCTTTCGGGTCTAGAAGGGAGCAAGGCTTCAAATCCTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACTTGGGTGGCATGTCATCTTCACAGATTTTACCTGCTATGATCTGCTCTGAGGATGGGATTCTAACTAGTATTGAGCAAGGTATGAACTGGTGTTGTAGCCCTGTTTGGTTGGCAGGCTGGGGGCCAACCAACGTTTATCCAAAGTCATCTTGTTGCTTTATATTGTTTCTGTTTTCTAATGCCTGAAAAGAATTATTTTCGAATCCATATGCATAAACTGGCTCAACTTTTCTAATTATGTGACTTGTAGGCAAGCAGCCTGTTGAACTGCTGGCAGAACCATGTGCAATTAATGGTTTTGACATTGACCGTCAACACCCATCAGTAAGTTGCCCATATACTATTTTATGCAAACTTGTGTTGTCTACTTTAGTTGTTGTGATGGTAAGATCTCTAGTTCTAACTGAAAGTGTTTATTGTCCCCTAATTGTGAAAATTGGGTTCTTATCTAAAAATGCTGTGAGGGTTTAGGTTGGTGTGGGGTGGCTATGTTTTGAGACTCTCTAAATATGCTATGCAGGAAGTGATATGTAACTTGGAGTGGGAATCCGTTGCCATCCTTTCAAGACCTTGATTTTCAGAAGTCATCGTTTTTTCTAAATCATCAGGTTCCAATGCACTATATTAATTCCTTTAACGATTTAAGGAGTATTCGTAGGTTTTTATCTCTCATTGAGTGCATGTAATTTCTTACTTTTAGGCTCATGTAAATTTTGTGGCTGTAGCTTTGTTTTTTTACCACATAATTGGAACTCAATTTTGATATGGATTTTCATACTGGTCAGCGACCATATCAGGG
mRNA sequence
CCGCCGTCTCAAAAAAATTAAATTCCGACGTCAATCTGATTCTGAGTCTTCCTTGGAAGTGAAAGGAAGCTCCGTTAAACCCTAACAATGGCGATCGTTAGTCCCCAACAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATGTTGATGGCGTTCGGTGGCTTCCACCGCTCTCCGCATTTAGCCGGTTTGCCACCATTGCCCTTTACGACTCTGATTCTGACTCATCCTCCATTGAAATTCACTCGGTGGCTCAAAAGCCACTGGATATAGCTCCTCATTCGACATGGATATCACCTTCAAGAGTGTCTTCCCTTAAAACCTCTCAACTCTACCAAAATCCTCTTGTTTTCGCTTCCACTTATACAGGTTCTCTTCATGTTTTATCTGTCGAGCCAATGGAAGCGTCGATCGACTCGGAGCTCTCGGTGCCCGAGAAGATGTTGCACGACGTACCTATTTCATGTGTCGATGTGACGGACGGGGGAGGTGAATGTCTGACTGTTTCGGAAGATGGACGAGTGAATTTGGTGAGCGTTGGAGAATCTGGATTGAATTATCGTCGGATTTTCGATAGTAATGGGTTGGTGTCGTATACCGCAGTGAAATGGGCATCGCCTACTGAGTTTGCGACTGGAGGTTGTGGCTTTAGCTTGCAATGGTGGGATCAGAGAAAGCCCGGTGGAGCAGTTTCTCAGTTTAAGGCCGATTGGGCTTCTGGTATAGTTCACTGCATTGATATCCATCCATCACGAAAGCATACTTGTTTGGTAAAATCTGTTACCTTTTTTTCTTATTTTTACATGATACTCAAGCAGGCAAAGTCACGGGGCTCTTTTGGTACTGTTTTTGCCTGGGATTTGAGGTCACAACAGCAGCCTATCATTCTTTCGGGTCTAGAAGGGAGCAAGGCTTCAAATCCTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACTTGGGTGGCATGTCATCTTCACAGATTTTACCTGCTATGATCTGCTCTGAGGATGGGATTCTAACTAGTATTGAGCAAGGCAAGCAGCCTGTTGAACTGCTGGCAGAACCATGTGCAATTAATGGTTTTGACATTGACCGTCAACACCCATCAGAAGTGATATGTAACTTGGAGTGGGAATCCGTTGCCATCCTTTCAAGACCTTGATTTTCAGAAGTCATCGTTTTTTCTAAATCATCAGGTTCCAATGCACTATATTAATTCCTTTAACGATTTAAGGAGTATTCGTAGGTTTTTATCTCTCATTGAGTGCATGTAATTTCTTACTTTTAGGCTCATGTAAATTTTGTGGCTGTAGCTTTGTTTTTTTACCACATAATTGGAACTCAATTTTGATATGGATTTTCATACTGGTCAGCGACCATATCAGGG
Coding sequence (CDS)
ATGGCGATCGTTAGTCCCCAACAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATGTTGATGGCGTTCGGTGGCTTCCACCGCTCTCCGCATTTAGCCGGTTTGCCACCATTGCCCTTTACGACTCTGATTCTGACTCATCCTCCATTGAAATTCACTCGGTGGCTCAAAAGCCACTGGATATAGCTCCTCATTCGACATGGATATCACCTTCAAGAGTGTCTTCCCTTAAAACCTCTCAACTCTACCAAAATCCTCTTGTTTTCGCTTCCACTTATACAGGTTCTCTTCATGTTTTATCTGTCGAGCCAATGGAAGCGTCGATCGACTCGGAGCTCTCGGTGCCCGAGAAGATGTTGCACGACGTACCTATTTCATGTGTCGATGTGACGGACGGGGGAGGTGAATGTCTGACTGTTTCGGAAGATGGACGAGTGAATTTGGTGAGCGTTGGAGAATCTGGATTGAATTATCGTCGGATTTTCGATAGTAATGGGTTGGTGTCGTATACCGCAGTGAAATGGGCATCGCCTACTGAGTTTGCGACTGGAGGTTGTGGCTTTAGCTTGCAATGGTGGGATCAGAGAAAGCCCGGTGGAGCAGTTTCTCAGTTTAAGGCCGATTGGGCTTCTGGTATAGTTCACTGCATTGATATCCATCCATCACGAAAGCATACTTGTTTGGTAAAATCTGTTACCTTTTTTTCTTATTTTTACATGATACTCAAGCAGGCAAAGTCACGGGGCTCTTTTGGTACTGTTTTTGCCTGGGATTTGAGGTCACAACAGCAGCCTATCATTCTTTCGGGTCTAGAAGGGAGCAAGGCTTCAAATCCTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACTTGGGTGGCATGTCATCTTCACAGATTTTACCTGCTATGATCTGCTCTGAGGATGGGATTCTAACTAGTATTGAGCAAGGCAAGCAGCCTGTTGAACTGCTGGCAGAACCATGTGCAATTAATGGTTTTGACATTGACCGTCAACACCCATCAGAAGTGATATGTAACTTGGAGTGGGAATCCGTTGCCATCCTTTCAAGACCTTGA
Protein sequence
MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKPLDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKMLHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPTEFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFYMILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGNLGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Homology
BLAST of CcUC02G031360 vs. NCBI nr
Match:
XP_008452472.1 (PREDICTED: nuclear pore complex protein NUP43 [Cucumis melo] >KAA0043096.1 nuclear pore complex protein NUP43 [Cucumis melo var. makuwa] >TYJ96393.1 nuclear pore complex protein NUP43 [Cucumis melo var. makuwa])
HSP 1 Score: 672.9 bits (1735), Expect = 1.5e-189
Identity = 327/367 (89.10%), Postives = 338/367 (92.10%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAI+SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFA IAL+DSD DSSSIEIHS+ Q P
Sbjct: 1 MAILSPQQQPQIHRFPQFKYVDGVRWLPPLSAFTRFAVIALFDSDFDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDIAPHSTW+SPSRVSSLKTSQL+QNPLVFASTYTGSLHVLSVEPMEAS+DSELSVPEKM
Sbjct: 61 LDIAPHSTWVSPSRVSSLKTSQLHQNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV D GGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSY AVKWASPT
Sbjct: 121 LHDGPISCVDVMDSGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYNAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EF TGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGTKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSS+QILPAMICSEDGILTSIEQGK+PVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 LGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDIDRQHPSEVICNLEWE 349
Query: 361 SVAILSR 368
SVAILSR
Sbjct: 361 SVAILSR 349
BLAST of CcUC02G031360 vs. NCBI nr
Match:
XP_004144716.1 (nuclear pore complex protein NUP43 [Cucumis sativus] >KGN61069.1 hypothetical protein Csa_021131 [Cucumis sativus])
HSP 1 Score: 671.8 bits (1732), Expect = 3.4e-189
Identity = 327/368 (88.86%), Postives = 339/368 (92.12%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFA IAL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDI PHSTWISPSRVSSLKTSQL++NPLVFASTYTGSLHVLSVEPMEAS+DSELSVPEKM
Sbjct: 61 LDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTVSEDGRV+LVSVGESGL+YRRIFDSNGLVSY AVKWASPT
Sbjct: 121 LHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EF TGGCGFSLQWWDQRKPGGAVSQFKA+WASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKANWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSS+QILPAMICSEDGILTSIEQGK+PVELLAEPCAINGFDI+RQHPSEVICNLEWE
Sbjct: 301 LGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. NCBI nr
Match:
XP_038889924.1 (nuclear pore complex protein NUP43 [Benincasa hispida])
HSP 1 Score: 667.2 bits (1720), Expect = 8.4e-188
Identity = 327/367 (89.10%), Postives = 335/367 (91.28%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAIVSPQQQPQIHRFPQFKYVDGVRWL LS FSR A IAL+DSDSDSSSIEIHS+ QKP
Sbjct: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLSSLSTFSRLAVIALFDSDSDSSSIEIHSLTQKP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDIAPHSTW SPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEA++DSELSVPEKM
Sbjct: 61 LDIAPHSTWTSPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEATLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTVSEDGRVNLVS+GESGLNY RIFDSNGLVSYTAVKWASPT
Sbjct: 121 LHDRPISCVDVMDGGGECLTVSEDGRVNLVSIGESGLNYSRIFDSNGLVSYTAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVH IDIHPSRKHTCL
Sbjct: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHGIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSSSQILPAMICSEDGILTSIEQGKQPV+LLAEPCAINGFDIDR HPSEVICNLEWE
Sbjct: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVDLLAEPCAINGFDIDRHHPSEVICNLEWE 349
Query: 361 SVAILSR 368
S+AILSR
Sbjct: 361 SIAILSR 349
BLAST of CcUC02G031360 vs. NCBI nr
Match:
XP_022937892.1 (nuclear pore complex protein NUP43 [Cucurbita moschata])
HSP 1 Score: 663.7 bits (1711), Expect = 9.3e-187
Identity = 322/368 (87.50%), Postives = 334/368 (90.76%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFA +AL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLHVLSVEPM+AS+DSELSVPEK+
Sbjct: 61 LDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKV 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSYTA KWASPT
Sbjct: 121 LHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EFATGGCGFSLQWWDQRKPGGAVSQFK DWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKGDWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
+GGMSSSQILPAMICSEDGI+TSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 IGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. NCBI nr
Match:
KAG6586038.1 (Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 662.5 bits (1708), Expect = 2.1e-186
Identity = 321/368 (87.23%), Postives = 333/368 (90.49%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFA +AL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLHVLSVEPM+AS+DSELSVPEK+
Sbjct: 61 LDMAPQSVWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKV 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSYTA KWASPT
Sbjct: 121 LHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EFATGGCGFSLQWWDQRKPGGAVSQFK DWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKGDWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGT FAWDLR QQQPIILSGLEGSK SN SPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTFFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
+GGMSSSQILPAMICSEDGI+TSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 IGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. ExPASy Swiss-Prot
Match:
Q24JJ9 (Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1 SV=1)
HSP 1 Score: 376.3 bits (965), Expect = 3.9e-103
Identity = 209/380 (55.00%), Postives = 249/380 (65.53%), Query Frame = 0
Query: 7 QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKPLD---- 66
Q Q+HR PQ KYVDGVRWLP SA +RF A YD+D DSSSIEI S+ P
Sbjct: 5 QDSFQVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNT 64
Query: 67 ---IAPHSTWISPSRVSSLKTSQL-----YQNPLVFASTYTGSLHVLSVEPME-ASIDSE 126
I S+W SPSRVSSL+ + P+V A+T +GSLHVL ++ +E A+I+
Sbjct: 65 NPLIESLSSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEF 124
Query: 127 LSVPEKMLHDVPISCVDVTDGGGECLTVSEDGRVNLVS-VGESGLNYRRIFDSNGLVSYT 186
+ + H + VD + GGEC+TV EDGRVN+V V GL YR++FD NGLV+Y
Sbjct: 125 YAAEGERFHVGRVEGVDWRE-GGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYR 184
Query: 187 AVKWASPTEFATGGCGFSLQWWDQRKPGGAVSQFKADW----ASGIVHCIDIHPSRKHTC 246
AVKWASPTEF TGG GF LQ WDQRK G AVSQ K +W S IVH IDIHPSRKHTC
Sbjct: 185 AVKWASPTEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRKHTC 244
Query: 247 LVKSVTFFSYFYMILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVW 306
+ + GS GTVFAWDLR QQPI+LSG+ S+ N ESEVW
Sbjct: 245 I------------------AGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVW 304
Query: 307 EVHYDPYIKSGNLGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQ 366
EV YD Y KS +SSS+ILP M CSEDGIL IEQG++P+ELLAEPCAIN FDIDRQ
Sbjct: 305 EVQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQ 361
Query: 367 HPSEVICNLEWESVAILSRP 369
+P +VIC+LEWES+A+ SRP
Sbjct: 365 NPQDVICSLEWESIAVFSRP 361
BLAST of CcUC02G031360 vs. ExPASy TrEMBL
Match:
A0A5D3BAS9 (Nuclear pore complex protein NUP43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00190 PE=4 SV=1)
HSP 1 Score: 672.9 bits (1735), Expect = 7.4e-190
Identity = 327/367 (89.10%), Postives = 338/367 (92.10%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAI+SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFA IAL+DSD DSSSIEIHS+ Q P
Sbjct: 1 MAILSPQQQPQIHRFPQFKYVDGVRWLPPLSAFTRFAVIALFDSDFDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDIAPHSTW+SPSRVSSLKTSQL+QNPLVFASTYTGSLHVLSVEPMEAS+DSELSVPEKM
Sbjct: 61 LDIAPHSTWVSPSRVSSLKTSQLHQNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV D GGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSY AVKWASPT
Sbjct: 121 LHDGPISCVDVMDSGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYNAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EF TGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGTKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSS+QILPAMICSEDGILTSIEQGK+PVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 LGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDIDRQHPSEVICNLEWE 349
Query: 361 SVAILSR 368
SVAILSR
Sbjct: 361 SVAILSR 349
BLAST of CcUC02G031360 vs. ExPASy TrEMBL
Match:
A0A1S3BTA6 (nuclear pore complex protein NUP43 OS=Cucumis melo OX=3656 GN=LOC103493491 PE=4 SV=1)
HSP 1 Score: 672.9 bits (1735), Expect = 7.4e-190
Identity = 327/367 (89.10%), Postives = 338/367 (92.10%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAI+SPQQQPQIHRFPQFKYVDGVRWLPPLSAF+RFA IAL+DSD DSSSIEIHS+ Q P
Sbjct: 1 MAILSPQQQPQIHRFPQFKYVDGVRWLPPLSAFTRFAVIALFDSDFDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDIAPHSTW+SPSRVSSLKTSQL+QNPLVFASTYTGSLHVLSVEPMEAS+DSELSVPEKM
Sbjct: 61 LDIAPHSTWVSPSRVSSLKTSQLHQNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV D GGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSY AVKWASPT
Sbjct: 121 LHDGPISCVDVMDSGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYNAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EF TGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEG+K SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGTKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSS+QILPAMICSEDGILTSIEQGK+PVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 LGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDIDRQHPSEVICNLEWE 349
Query: 361 SVAILSR 368
SVAILSR
Sbjct: 361 SVAILSR 349
BLAST of CcUC02G031360 vs. ExPASy TrEMBL
Match:
A0A0A0LJ46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1)
HSP 1 Score: 671.8 bits (1732), Expect = 1.7e-189
Identity = 327/368 (88.86%), Postives = 339/368 (92.12%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAI SPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFA IAL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LDI PHSTWISPSRVSSLKTSQL++NPLVFASTYTGSLHVLSVEPMEAS+DSELSVPEKM
Sbjct: 61 LDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTVSEDGRV+LVSVGESGL+YRRIFDSNGLVSY AVKWASPT
Sbjct: 121 LHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EF TGGCGFSLQWWDQRKPGGAVSQFKA+WASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKANWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLRSQQQPIILSGLEGSK SNPSPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
LGGMSS+QILPAMICSEDGILTSIEQGK+PVELLAEPCAINGFDI+RQHPSEVICNLEWE
Sbjct: 301 LGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. ExPASy TrEMBL
Match:
A0A6J1FCG9 (nuclear pore complex protein NUP43 OS=Cucurbita moschata OX=3662 GN=LOC111444145 PE=4 SV=1)
HSP 1 Score: 663.7 bits (1711), Expect = 4.5e-187
Identity = 322/368 (87.50%), Postives = 334/368 (90.76%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFA +AL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLHVLSVEPM+AS+DSELSVPEK+
Sbjct: 61 LDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKV 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV DGGGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSYTA KWASPT
Sbjct: 121 LHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EFATGGCGFSLQWWDQRKPGGAVSQFK DWASGIVHCIDIHPSRKHTCL
Sbjct: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKGDWASGIVHCIDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESEVWEVHYDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
+GGMSSSQILPAMICSEDGI+TSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE
Sbjct: 301 IGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. ExPASy TrEMBL
Match:
A0A6J1HYH3 (nuclear pore complex protein NUP43 OS=Cucurbita maxima OX=3661 GN=LOC111468634 PE=4 SV=1)
HSP 1 Score: 653.7 bits (1685), Expect = 4.7e-184
Identity = 316/368 (85.87%), Postives = 330/368 (89.67%), Query Frame = 0
Query: 1 MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKP 60
MAIVSPQQQPQIHRFPQFKY+DGVRWLPPLSAF RFA +AL+DSDSDSSSIEIHS+ Q P
Sbjct: 1 MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
Query: 61 LDIAPHSTWISPSRVSSLKTSQLYQNPLVFASTYTGSLHVLSVEPMEASIDSELSVPEKM 120
LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLHVLSVEPM+AS+DSELSVPEK+
Sbjct: 61 LDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKI 120
Query: 121 LHDVPISCVDVTDGGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAVKWASPT 180
LHD PISCVDV D GGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSYTA KWASPT
Sbjct: 121 LHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
Query: 181 EFATGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLVKSVTFFSYFY 240
EFATGGCGFSLQWWDQRKPGGAV QFK DWASGIVHC+DIHPSRKHTCL
Sbjct: 181 EFATGGCGFSLQWWDQRKPGGAVCQFKGDWASGIVHCMDIHPSRKHTCL----------- 240
Query: 241 MILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVWEVHYDPYIKSGN 300
+ GSFGTVFAWDLR QQQPIILSGLEGSK SN SPCESEVWEV YDPYIKSGN
Sbjct: 241 -------AGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGN 300
Query: 301 LGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWE 360
+GGMSSSQILPAMICSEDGI+TSIEQGKQPVELLAEPCAINGFDID QHPSEVICNLEWE
Sbjct: 301 IGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWE 350
Query: 361 SVAILSRP 369
SVAILSRP
Sbjct: 361 SVAILSRP 350
BLAST of CcUC02G031360 vs. TAIR 10
Match:
AT4G30840.1 (Transducin/WD40 repeat-like superfamily protein )
HSP 1 Score: 376.3 bits (965), Expect = 2.8e-104
Identity = 209/380 (55.00%), Postives = 249/380 (65.53%), Query Frame = 0
Query: 7 QQQPQIHRFPQFKYVDGVRWLPPLSAFSRFATIALYDSDSDSSSIEIHSVAQKPLD---- 66
Q Q+HR PQ KYVDGVRWLP SA +RF A YD+D DSSSIEI S+ P
Sbjct: 5 QDSFQVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNT 64
Query: 67 ---IAPHSTWISPSRVSSLKTSQL-----YQNPLVFASTYTGSLHVLSVEPME-ASIDSE 126
I S+W SPSRVSSL+ + P+V A+T +GSLHVL ++ +E A+I+
Sbjct: 65 NPLIESLSSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEF 124
Query: 127 LSVPEKMLHDVPISCVDVTDGGGECLTVSEDGRVNLVS-VGESGLNYRRIFDSNGLVSYT 186
+ + H + VD + GGEC+TV EDGRVN+V V GL YR++FD NGLV+Y
Sbjct: 125 YAAEGERFHVGRVEGVDWRE-GGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYR 184
Query: 187 AVKWASPTEFATGGCGFSLQWWDQRKPGGAVSQFKADW----ASGIVHCIDIHPSRKHTC 246
AVKWASPTEF TGG GF LQ WDQRK G AVSQ K +W S IVH IDIHPSRKHTC
Sbjct: 185 AVKWASPTEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRKHTC 244
Query: 247 LVKSVTFFSYFYMILKQAKSRGSFGTVFAWDLRSQQQPIILSGLEGSKASNPSPCESEVW 306
+ + GS GTVFAWDLR QQPI+LSG+ S+ N ESEVW
Sbjct: 245 I------------------AGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVW 304
Query: 307 EVHYDPYIKSGNLGGMSSSQILPAMICSEDGILTSIEQGKQPVELLAEPCAINGFDIDRQ 366
EV YD Y KS +SSS+ILP M CSEDGIL IEQG++P+ELLAEPCAIN FDIDRQ
Sbjct: 305 EVQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQ 361
Query: 367 HPSEVICNLEWESVAILSRP 369
+P +VIC+LEWES+A+ SRP
Sbjct: 365 NPQDVICSLEWESIAVFSRP 361
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008452472.1 | 1.5e-189 | 89.10 | PREDICTED: nuclear pore complex protein NUP43 [Cucumis melo] >KAA0043096.1 nucle... | [more] |
XP_004144716.1 | 3.4e-189 | 88.86 | nuclear pore complex protein NUP43 [Cucumis sativus] >KGN61069.1 hypothetical pr... | [more] |
XP_038889924.1 | 8.4e-188 | 89.10 | nuclear pore complex protein NUP43 [Benincasa hispida] | [more] |
XP_022937892.1 | 9.3e-187 | 87.50 | nuclear pore complex protein NUP43 [Cucurbita moschata] | [more] |
KAG6586038.1 | 2.1e-186 | 87.23 | Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. soror... | [more] |
Match Name | E-value | Identity | Description | |
Q24JJ9 | 3.9e-103 | 55.00 | Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BAS9 | 7.4e-190 | 89.10 | Nuclear pore complex protein NUP43 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... | [more] |
A0A1S3BTA6 | 7.4e-190 | 89.10 | nuclear pore complex protein NUP43 OS=Cucumis melo OX=3656 GN=LOC103493491 PE=4 ... | [more] |
A0A0A0LJ46 | 1.7e-189 | 88.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1 | [more] |
A0A6J1FCG9 | 4.5e-187 | 87.50 | nuclear pore complex protein NUP43 OS=Cucurbita moschata OX=3662 GN=LOC111444145... | [more] |
A0A6J1HYH3 | 4.7e-184 | 85.87 | nuclear pore complex protein NUP43 OS=Cucurbita maxima OX=3661 GN=LOC111468634 P... | [more] |
Match Name | E-value | Identity | Description | |
AT4G30840.1 | 2.8e-104 | 55.00 | Transducin/WD40 repeat-like superfamily protein | [more] |