CcUC02G030960 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030960
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	CicolChr02: 26499591 .. 26501809 (+)
RNA-Seq Expression	CcUC02G030960
Synteny	CcUC02G030960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATGATGAGCAGCAACAACAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACGACGTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGAGATCACTTCGAGAAGTTTGGTGAGATTCTGGAGGCGGTTATCATTTCCGATAAACTCACTGGCAGATCCAAGGGCTATGGATTCGTAAGTGATGGATTCGACTGACGGAGTTAGGGATTTCGTTTTACTTGATTGATTGATTCTGAGTTTTTTTTTTTTTTCAGGTTACATTCAAGGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGTTAACTTCCTCTTCCTCTTCCTCTTCTCATTGTGCATGATTTGGCAATGGCATTTGAAGAAATTAGACGGCGGAGATCTGAATTTGGTTTGTGATCTTTTGAAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCCGCGGGGACTCATCCTACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGGTATACCTTAAGATCCCATGTCCTCTTCCGTATTCTAATACTACCCATTTTAATGGACCTTTTTTTAAATATATATACATTTATTTGGGTTTTTTCTTGTAAATTAAACGCAAATTTCATTTTCTTTTAGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACGTAAGCCATCCTTTTATTCCTTTATTTTTCTTTTAATTTCTTTAGCTTATGTTGATTTAATTTAATAAGACATAATTCAAATTTTTAGTTTTAACATTCTGCATGGAATTGGATAGAACGATATATAGTAAAACGGCGACGTTTTTTGTGATGAACAGAAACTGGGGTATATGAACGGCCATTACACGCAGATGTATCCGGGCCAAGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTCTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACCACTGCGGGCCCATTCGCCGCGGTCCCACCCACTTCTATAATGTCCAAACCAGCCTCTGTTGGTCCCAACCCAGGTCCGTCTTTTTGTAATTCATCAGTTTAAACTTTTAGATTTATGCGTAATTTAATATTCTCTTGAGAAGAAGTTGTGCATTCTATTTTTTAACAGCTTTTGAAGTTTTATTAAAATTTCTTATTATTATAATCTACATTTAGTTATAGTTTTTGAAAATTGTCATTCTGCTTTGTTATTATTTTATAACCATCCTCCCCTCCAGTTAATTCACCGTTTCAAGTAGTCTAATTGTGGTCTGATGATGACTACAATAGAACAACGGATGGCCTTCGCCCATTGTTTTGCCTTTTGCATGTCGTAAAAACACAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAACAGATCAGAGTCGTCCTTCACGTGAAAGGGTGATTTTAGTAAAAGCGTCTCCTCCCCCACTGCCAACTGGCTTCACTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGCTGGTCTTGCTGTCCCTTTCCAGTTGTTAATAATTCTTAACATGAAGGACTCTTTTGCAAAATCAACCACTTTTCTAGATTTCTAAATGCCAAATGAAAACTAAAAAAAAAAAATTAGTTTATGTTTTTTAAATTTAACAATAAATCCAACCATTCAATTTGTTATGCTAAAAATAGTTTCTCCATATATGTGTTTAATAGTCCTTTTTCTTGAGTATATTTCTTGTATAATCATGTTTCTAAACTTGTTGGGATTTTTACACATTTTTAAAGCTCAAATCTTAAACCCCATGTCAGTTTATATGATGTAATTGTGTGAAGTAAATGATGTTGTTGTAAACCTAGAGAGTTTTTGATTTGAAGGATGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAATAGGTACAGTTGGAGGAGGATGCAGGGGATGATGATGATGGTAAAAGAAGAGCAGAGAAGAATTAA

mRNA sequence

ATGACCATGATGAGCAGCAACAACAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACGACGTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGAGATCACTTCGAGAAGTTTGGTGAGATTCTGGAGGCGGTTATCATTTCCGATAAACTCACTGGCAGATCCAAGGGCTATGGATTCGTTACATTCAAGGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCCGCGGGGACTCATCCTACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACAAACTGGGGTATATGAACGGCCATTACACGCAGATGTATCCGGGCCAAGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTCTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACCACTGCGGGCCCATTCGCCGCGGTCCCACCCACTTCTATAATGTCCAAACCAGCCTCTGTACAGTTGGAGGAGGATGCAGGGGATGATGATGATGGTAAAAGAAGAGCAGAGAAGAATTAA

Coding sequence (CDS)

ATGACCATGATGAGCAGCAACAACAGCAATAATACTAATAATGCAGGTTTGTTCGGCGACACGACGTTGACGAAGGTCTTCGTTGGGGGATTAGCTTGGGAGACTCCAAAGGAAGCCATGAGAGATCACTTCGAGAAGTTTGGTGAGATTCTGGAGGCGGTTATCATTTCCGATAAACTCACTGGCAGATCCAAGGGCTATGGATTCGTTACATTCAAGGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGGCGGCTCTAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGATCCAACGGTGGAGGACCGAGGACGACGTCACCAGCCGCACCGGGAAATCACGTGCAGTGGTACTACCCCGCGGGGACTCATCCTACGCCGTTTCATCATCAGCCTCATCAGCCCGTCCCTTTCTATGGATACTCCCCAAGCCCCACTTACATCGCCACCGATATCAGTTACAACCACAAACTGGGGTATATGAACGGCCATTACACGCAGATGTATCCGGGCCAAGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTCTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATTTTCCCTCCTAGTCCCACCACTGCGGGCCCATTCGCCGCGGTCCCACCCACTTCTATAATGTCCAAACCAGCCTCTGTACAGTTGGAGGAGGATGCAGGGGATGATGATGATGGTAAAAGAAGAGCAGAGAAGAATTAA

Protein sequence

MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPASVQLEEDAGDDDDGKRRAEKN

Homology

[Close]

BLAST of CcUC02G030960 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134
Identity = 242/253 (95.65%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMMS+  ++N NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTS-PAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTTS  A PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASV 253
           VPP+SIMSKPASV
Sbjct: 241 VPPSSIMSKPASV 253

[Close]

BLAST of CcUC02G030960 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida])

HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134
Identity = 242/253 (95.65%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMMS+  ++N NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTS-PAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTTS  A PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 NHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPASV 253
           VPP+SIMSKPASV
Sbjct: 241 VPPSSIMSKPASV 253

[Close]

BLAST of CcUC02G030960 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 482.6 bits (1241), Expect = 2.2e-132
Identity = 240/255 (94.12%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 1   MTMM--SSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISD 60
           MTMM  ++NN+N++ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASV 253
           AAVPPTSIMSKP +V
Sbjct: 241 AAVPPTSIMSKPTTV 255

[Close]

BLAST of CcUC02G030960 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 482.6 bits (1241), Expect = 2.2e-132
Identity = 240/255 (94.12%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 1   MTMM--SSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISD 60
           MTMM  ++NN+N++ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASV 253
           AAVPPTSIMSKP +V
Sbjct: 241 AAVPPTSIMSKPTTV 255

[Close]

BLAST of CcUC02G030960 vs. NCBI nr
Match: XP_008445853.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo])

HSP 1 Score: 475.7 bits (1223), Expect = 2.6e-130
Identity = 238/254 (93.70%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMM++  ++NT NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKL
Sbjct: 1   MTMMTTTTNSNT-NAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240
           NHKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA
Sbjct: 181 NHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240

Query: 241 AVPPTSIMSKPASV 253
           AVPPTSIMSKP +V
Sbjct: 241 AVPPTSIMSKPTTV 253

[Close]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-57
Identity = 138/261 (52.87%), Postives = 168/261 (64.37%), Query Frame = 0


Query: 9   SNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 68
           SNN N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYG
Sbjct: 4   SNNVN--GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 63

Query: 69  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGP 128
           FVTFKDA++A +ACEDS PIINGRRANCNLASLG R   S + + +P QGP+ G+     
Sbjct: 64  FVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMT-SPQQGPKNGNR---- 123

Query: 129 RTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG---- 188
              +P   GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G    
Sbjct: 124 --ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGG 183

Query: 189 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPA 245
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G   
Sbjct: 184 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF-- 243

[Close]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.5e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 20  DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 79
           DTT TK+FVGGL + T   ++R +FE FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDSAPIINGRRANCNLASLGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 20  DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 79
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDSAPIINGRRANCNLASLGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 20  DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 79
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDSAPIINGRRANCNLASLGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 20  DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 79
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 80  KACEDSAPIINGRRANCNLASLGAR 105
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.0e-132
Identity = 240/255 (94.12%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 1   MTMM--SSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISD 60
           MTMM  ++NN+N++ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQG 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ 
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTTS A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 AAVPPTSIMSKPASV 253
           AAVPPTSIMSKP +V
Sbjct: 241 AAVPPTSIMSKPTTV 255

[Close]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.3e-130
Identity = 238/254 (93.70%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMM++  ++NT NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKL
Sbjct: 1   MTMMTTTTNSNT-NAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240
           NHKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA
Sbjct: 181 NHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240

Query: 241 AVPPTSIMSKPASV 253
           AVPPTSIMSKP +V
Sbjct: 241 AVPPTSIMSKPTTV 253

[Close]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.3e-130
Identity = 238/254 (93.70%), Postives = 246/254 (96.85%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMM++  ++NT NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKL
Sbjct: 1   MTMMTTTTNSNT-NAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240
           NHKLGY+NGHYTQMYPGQ AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA
Sbjct: 181 NHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240

Query: 241 AVPPTSIMSKPASV 253
           AVPPTSIMSKP +V
Sbjct: 241 AVPPTSIMSKPTTV 253

[Close]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.7e-130
Identity = 237/254 (93.31%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MTMMSSNNSNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60
           MTMM++  ++NT NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKL
Sbjct: 1   MTMMTTTTNSNT-NAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQ PQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSPA-APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTT+ A APGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYMNGHYTQMYPGQ-AMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240
           NHKLGY+NGHYTQMYPGQ AMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA
Sbjct: 181 NHKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240

Query: 241 AVPPTSIMSKPASV 253
           AVPPTSIMSKP +V
Sbjct: 241 AVPPTSIMSKPTTV 253

[Close]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.0e-121
Identity = 233/276 (84.42%), Postives = 243/276 (88.04%), Query Frame = 0


Query: 11  NTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 70
           + NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62

Query: 71  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQ-PGSNGGGPR 130
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQ PQ PGSNGGGPR
Sbjct: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122

Query: 131 TTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGH 190
           TTS A  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTYIATDISYNHK+GYMNGH
Sbjct: 123 TTS-APSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 182

Query: 191 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 250
           Y Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSKP
Sbjct: 183 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSKP 242

Query: 251 ASV--------------QLEEDAGDDDDGKRRAEKN 272
           ASV              + EE+  DD+DGKRRA+KN
Sbjct: 243 ASVAPTPGKVGGECMQWKEEEEDDDDNDGKRRAQKN 271

[Close]

BLAST of CcUC02G030960 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.2 bits (565), Expect = 4.9e-58
Identity = 138/261 (52.87%), Postives = 168/261 (64.37%), Query Frame = 0


Query: 9   SNNTNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 68
           SNN N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYG
Sbjct: 4   SNNVN--GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 63

Query: 69  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGP 128
           FVTFKDA++A +ACEDS PIINGRRANCNLASLG R   S + + +P QGP+ G+     
Sbjct: 64  FVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMT-SPQQGPKNGNR---- 123

Query: 129 RTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG---- 188
              +P   GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G    
Sbjct: 124 --ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGG 183

Query: 189 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPA 245
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G   
Sbjct: 184 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF-- 243

[Close]

BLAST of CcUC02G030960 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 9.0e-44
Identity = 111/230 (48.26%), Postives = 134/230 (58.26%), Query Frame = 0


Query: 40  MRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 99
           M DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 100 SLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGNHVQWYYPAGTHPTPFHHQPHQ 159
           SLG R        ATPP                    GNH QWYYP+G        Q HQ
Sbjct: 61  SLGGRLRPKNGNRATPPH------------------VGNHSQWYYPSGFTNQQHQQQNHQ 120

Query: 160 PVPFYGYSPSPTYIATDISYNHKLG-----YMNGHYTQMYP------------------G 219
            VPFYGY PS  Y+A ++++N K+G     YMNG+Y QM P                  G
Sbjct: 121 AVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGG 180

Query: 220 QAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA-AVPPTS 245
           + MVG A+ ++P Y +Y YHQS A+G       P P+ + P + + PP S
Sbjct: 181 RVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLSFSTPPIS 204

[Close]

BLAST of CcUC02G030960 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 9.6e-38
Identity = 102/236 (43.22%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 19  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 78
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 138
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 139 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 198
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 199 -----PGQAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIFPPS 231
                 G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of CcUC02G030960 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 9.6e-38
Identity = 102/236 (43.22%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 19  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 78
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 138
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 139 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 198
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 199 -----PGQAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIFPPS 231
                 G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of CcUC02G030960 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 9.6e-38
Identity = 102/236 (43.22%), Postives = 132/236 (55.93%), Query Frame = 0


Query: 19  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 78
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 79  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQGPQPGSNGGGPRTTSPAAPGN 138
           + AC D+ P+I+GRRANCNLASLG +    RS  +TP       ++GGG R  +     +
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQ----RSKPSTP-------NHGGGGRINNMRVMMS 127

Query: 139 HVQWYY--PAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYMNGHYTQMY- 198
            +Q  +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 199 -----PGQAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIFPPS 231
                 G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

The following BLAST results are available for this feature:

BLAST of CcUC02G030960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891950.1	1.4e-134	95.65	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]
XP_038891949.1	1.4e-134	95.65	probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]	[more]
XP_004143608.1	2.2e-132	94.12	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_011654915.1	2.2e-132	94.12	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]
XP_008445853.2	2.6e-130	93.70	PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo]	[more]

BLAST of CcUC02G030960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.9e-57	52.87	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	2.5e-22	58.82	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q5ZJX4	3.2e-22	57.65	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	4.2e-22	57.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	4.2e-22	57.65	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]

BLAST of CcUC02G030960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6	1.0e-132	94.12	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BD62	1.3e-130	93.70	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3BEI0	1.3e-130	93.70	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7SY01	3.7e-130	93.31	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1FUE8	7.0e-121	84.42	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CcUC02G030960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	4.9e-58	52.87	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	9.0e-44	48.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	9.6e-38	43.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	9.6e-38	43.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	9.6e-38	43.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..97 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..83 e-value: 7.4E-18 score: 64.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..101 score: 17.318792
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..114 e-value: 1.4E-24 score: 88.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..271
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 3..246
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 3..246
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 24..99 e-value: 1.67279E-42 score: 138.132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030960.1	CcUC02G030960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding