CcUC02G030950 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030950
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 26483411 .. 26483614 (-)
RNA-Seq Expression	CcUC02G030950
Synteny	CcUC02G030950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCTCAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACAACCTTATCCTGGCTTTGCCCCAATGTTCCCCACACTACCACAACCTCTGTCCACCAAGCTCAATGACACGAATTACCTCTCCTTGATGACGCAACTCATGAATGCAGCCATCGTCAATGGTCTTTAA

mRNA sequence

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCTCAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACAACCTTATCCTGGCTTTGCCCCAATGTTCCCCACACTACCACAACCTCTGTCCACCAAGCTCAATGACACGAATTACCTCTCCTTGATGACGCAACTCATGAATGCAGCCATCGTCAATGGTCTTTAA

Coding sequence (CDS)

ATGCCCCCACCCCAGCCTCTATATCAACAATATCCTCAGTATCAACCTCCTAATTTTCCCCAATTTCTTCCCAGACAACCTTATCCTGGCTTTGCCCCAATGTTCCCCACACTACCACAACCTCTGTCCACCAAGCTCAATGACACGAATTACCTCTCCTTGATGACGCAACTCATGAATGCAGCCATCGTCAATGGTCTTTAA

Protein sequence

MPPPQPLYQQYPQYQPPNFPQFLPRQPYPGFAPMFPTLPQPLSTKLNDTNYLSLMTQLMNAAIVNGL

Homology

[Close]

BLAST of CcUC02G030950 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 16 PPNFPQFLPRQPYPGFAPMFPTLPQPLSTKLNDTNYLSLMTQLMNAAIVNGL 68
          PP  P FL + P P  A  FPTLPQPL+ KLND N+L    QL+NA I NGL
Sbjct: 4  PPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGL 55

[Close]

BLAST of CcUC02G030950 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 16 PPNFPQFLPRQPYPGFAPMFPTLPQPLSTKLNDTNYLSLMTQLMNAAIVNGL 68
          PP  P FL + P P  A  FPTLPQPL+ KLND N+L    QL+NA I NGL
Sbjct: 4  PPPTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGL 55

The following BLAST results are available for this feature:

BLAST of CcUC02G030950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	2.1e-04	57.69	uncharacterized protein LOC111022315 [Momordica charantia]	[more]

BLAST of CcUC02G030950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G030950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	1.0e-04	57.69	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of CcUC02G030950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030950.1	CcUC02G030950.1	mRNA