CcUC02G030860 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030860
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L10
Location	CicolChr02: 26316997 .. 26317698 (-)
RNA-Seq Expression	CcUC02G030860
Synteny	CcUC02G030860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTCAAATTCTAACCCTAAACAGACCCACAAACCCATTTTCCTTCTCTCTCCGCCGCCATTCCACCAGTCAAAGACGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCATCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCCGGACAGTGA

mRNA sequence

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTCAAATTCTAACCCTAAACAGACCCACAAACCCATTTTCCTTCTCTCTCCGCCGCCATTCCACCAGTCAAAGACGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCATCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCCGGACAGTGA

Coding sequence (CDS)

ATGGAAGCTTCTCTTCTAAGCTTTACCTCCTTCACACCCCCTTCTTCTTCTCAAATTCTAACCCTAAACAGACCCACAAACCCATTTTCCTTCTCTCTCCGCCGCCATTCCACCAGTCAAAGACGCCATTATCGCGGCCTCAAGGTCGCTGCCGCCATTTCCCGCACTAAGAAAGAGGAAACCATCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCCGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTCCGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCCAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACCTCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGCTATTTGTCCACTCCGAGGAAATTCCGGCCGCAATTAAGCCTTATAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACCGGAGCGGTTTTCGAGGGGAAATATTACGGGCCGGATGATTTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCCAAAATGTTGGGTCTGTTGCAGGGTCCGGCGTCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTCTGAAGGCCTACGTGAAGAAATTGGAGGAGCAAGGCGGCGGCGCCGGACAGTGA

Protein sequence

MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ

Homology

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BLAST of CcUC02G030860 vs. NCBI nr
Match: XP_008445837.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1 50S ribosomal protein L10 [Cucumis melo var. makuwa])

HSP 1 Score: 437.2 bits (1123), Expect = 9.0e-119
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASL+SFTSFTPP SSQILTLNRPTNP SFSL RHST+Q RHYRGLKVAAAISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. NCBI nr
Match: XP_004143603.1 (50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypothetical protein Csa_000689 [Cucumis sativus])

HSP 1 Score: 434.5 bits (1116), Expect = 5.8e-118
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSS--QILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSS  QILTLNRPTNP SFSL RHST+Q RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EET+ETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

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BLAST of CcUC02G030860 vs. NCBI nr
Match: XP_038893368.1 (50S ribosomal protein L10, chloroplastic [Benincasa hispida])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 222/234 (94.87%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MEASLLSFTSFTPP--SSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKK 60
           MEASLLSFTSFTPP  SSSQILTLNRPTNPFSFS  RHST+Q RHYRGL VAAAISRTKK
Sbjct: 39  MEASLLSFTSFTPPSSSSSQILTLNRPTNPFSFSPPRHSTNQTRHYRGLMVAAAISRTKK 98

Query: 61  EETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EET+ETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 99  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 158

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 159 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 218

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 233
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG+G
Sbjct: 219 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGSG 272

[Close]

BLAST of CcUC02G030860 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 2.3e-114
Identity = 214/233 (91.85%), Postives = 223/233 (95.71%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASLLSF SF  PSSSQILTLNRPTNP SFS  RHST+Q RHYR LKVAAAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. NCBI nr
Match: XP_023523503.1 (50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418.3 bits (1074), Expect = 4.3e-113
Identity = 211/233 (90.56%), Postives = 221/233 (94.85%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASLLSF SF  PSSSQILTLNRPTNP SFS  RHST+Q RHYR LKV+ AISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVSGAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot
Match: O80362 (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.7e-86
Identity = 162/230 (70.43%), Postives = 191/230 (83.04%), Query Frame = 0


Query: 9   TSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQ-----RRHY----RGLKVAAAISRTKKE 68
           T FT PSS+        ++ + FSL+ H  +        H+    + L + +AISRTKKE
Sbjct: 4   TFFTLPSST--------SHSYPFSLKSHFNNSLTLPTHPHFKPKSKNLTIRSAISRTKKE 63

Query: 69  ETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 128
           ET+ETVKQQLEDCYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WE
Sbjct: 64  ETVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWE 123

Query: 129 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 188
           ALKPCMKGMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP++FKALE
Sbjct: 124 ALKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALE 183

Query: 189 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGG 230
           T+P+RAE+YA++LG L+GPAS++VGTIQAPAR L+MVLKAYVKKLEE+GG
Sbjct: 184 TLPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot
Match: Q9FY50 (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.8e-77
Identity = 148/228 (64.91%), Postives = 177/228 (77.63%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKV-AAAISRTKKE 60
           ME +LLSF+S   P   Q ++   P            TS   +Y  L V  +A+SR KKE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP-----------KTSNSPNYPRLPVIRSAVSRNKKE 60

Query: 61  ETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ET+E VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WE
Sbjct: 61  ETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LE
Sbjct: 121 ALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQ 228
           TMP+RAEVYAKMLG LQ PA +LV T+QAPARE++MVL AY+KKLE++
Sbjct: 181 TMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot
Match: P82139 (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 4.8e-75
Identity = 134/201 (66.67%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 27  NPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEETIETVKQQLEDCYLLAGIKYKGFTVK 86
           NPF  +      +  +H     + AAISRTKKEET+ETV++ LE+CYLLA I YKGFTVK
Sbjct: 28  NPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVK 87

Query: 87  QFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPY 146
           QFQ+LR++LPE + LIVAKNTLV KA++ T W A+KPCMKGMN WLFVHSEEIP AIKPY
Sbjct: 88  QFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPY 147

Query: 147 RDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTI 206
           R FQKE+KLEDNDFTGA FEGK+YGP + K LETMPS+AE++AK+LG L+ P S+LVGT+
Sbjct: 148 RTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTL 207

Query: 207 QAPARELLMVLKAYVKKLEEQ 228
           QAPAR+L+ +LKAY+KKLE++
Sbjct: 208 QAPARDLVFLLKAYIKKLEDE 228

[Close]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot
Match: B1ZGR8 (50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplJ PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.0e-17
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 0


Query: 53  ISRTKKEETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 112
           + RT K + + T+        ++    YKG TV   Q+LR  + +    + VAKN L   
Sbjct: 1   MDRTAKADLVSTLNGVFTTNAVVVVAHYKGLTVADMQKLRSQMKQAGATVKVAKNRLASI 60

Query: 113 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 172
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSSDPVAAAKVAVDFAKTN--DKLVILGGAMGTTALN 120

Query: 173 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 226
           PD  KAL T+PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALATLPSLDELRAKLVGLIQAPATKVAQVVNAPAAKLARVFGAYAKKDE 170

[Close]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot
Match: B1LY45 (50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplJ PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.9e-17
Identity = 58/174 (33.33%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 53  ISRTKKEETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 112
           + RT K + + T+     +  ++    YKG TV   Q+LR  + +    + VAKN+L   
Sbjct: 1   MDRTAKADLVSTLNGVFNESAVVVVAHYKGLTVADMQKLRAQMKQAGATVKVAKNSLAGI 60

Query: 113 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 172
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSGDPVAAAKVAVDFAKAN--DKLVILGGAMGKTALN 120

Query: 173 PDDFKALETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLE 226
           PD  KAL ++PS  E+ AK++GL+Q PA+ +   + APA +L  V  AY KK E
Sbjct: 121 PDGVKALASLPSLDELRAKIVGLVQAPATKIAQVVNAPASKLARVFGAYAKKDE 170

[Close]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL
Match: A0A5A7SUB8 (50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00270 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.3e-119
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASL+SFTSFTPP SSQILTLNRPTNP SFSL RHST+Q RHYRGLKVAAAISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL
Match: A0A1S3BDM0 (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.3e-119
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASL+SFTSFTPP SSQILTLNRPTNP SFSL RHST+Q RHYRGLKVAAAISRTKKEE
Sbjct: 1   MEASLISFTSFTPPPSSQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPD+FKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKALET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL
Match: A0A0A0KLL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.8e-118
Identity = 221/235 (94.04%), Postives = 228/235 (97.02%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSS--QILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSS  QILTLNRPTNP SFSL RHST+Q RHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EET+ETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           ETMPSRAEVYAKMLGLLQ PASSLVGTIQAPARELLMVLKAYV+KLEEQGGG GQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL
Match: A0A6J1JII9 (50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487249 PE=3 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 214/233 (91.85%), Postives = 223/233 (95.71%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASLLSF SF  PSSSQILTLNRPTNP SFS  RHST+Q RHYR LKVAAAISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAGQ 234
           MPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG GQ
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL
Match: A0A6J1FTN1 (50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448014 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 7.9e-113
Identity = 210/232 (90.52%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKVAAAISRTKKEE 60
           MEASLLSF SF  PSSSQILTLNRPTNP SFS  RHST+Q RHYR LKVA AISRTKKEE
Sbjct: 1   MEASLLSFPSFKTPSSSQILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKKEE 60

Query: 61  TIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEA 120
           T+ETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+WEA
Sbjct: 61  TVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTWEA 120

Query: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALET 180
           LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFK LET
Sbjct: 121 LKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTLET 180

Query: 181 MPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQGGGAG 233
           MPSRAEVYAKMLGLL+GPASSLVGT+QAPAR++LMVLKAYV+KLEEQGGG G
Sbjct: 181 MPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CcUC02G030860 vs. TAIR 10
Match: AT5G13510.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 288.1 bits (736), Expect = 6.3e-78
Identity = 148/228 (64.91%), Postives = 177/228 (77.63%), Query Frame = 0


Query: 1   MEASLLSFTSFTPPSSSQILTLNRPTNPFSFSLRRHSTSQRRHYRGLKV-AAAISRTKKE 60
           ME +LLSF+S   P   Q ++   P            TS   +Y  L V  +A+SR KKE
Sbjct: 1   MEVALLSFSSSLSPLCHQRISTLTP-----------KTSNSPNYPRLPVIRSAVSRNKKE 60

Query: 61  ETIETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWE 120
           ET+E VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT WE
Sbjct: 61  ETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWE 120

Query: 121 ALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALE 180
           ALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD+FK LE
Sbjct: 121 ALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLE 180

Query: 181 TMPSRAEVYAKMLGLLQGPASSLVGTIQAPARELLMVLKAYVKKLEEQ 228
           TMP+RAEVYAKMLG LQ PA +LV T+QAPARE++MVL AY+KKLE++
Sbjct: 181 TMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CcUC02G030860 vs. TAIR 10
Match: AT3G12370.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-48
Identity = 92/146 (63.01%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 66  KQQLEDCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTSWEALKP 125
           K  LE+C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 126 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKALETMPS 185
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P D+K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 186 RAEVYAKMLGLLQGPASSLVGTIQAP 210
           RA+VY  MLG L  PA  LV  +QAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of CcUC02G030860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445837.1	9.0e-119	94.42	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1...	[more]
XP_004143603.1	5.8e-118	94.04	50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypotheti...	[more]
XP_038893368.1	1.3e-117	94.87	50S ribosomal protein L10, chloroplastic [Benincasa hispida]	[more]
XP_022990377.1	2.3e-114	91.85	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
XP_023523503.1	4.3e-113	90.56	50S ribosomal protein L10, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC02G030860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80362	4.7e-86	70.43	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
Q9FY50	8.8e-77	64.91	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82139	4.8e-75	66.67	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
B1ZGR8	6.0e-17	33.91	50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
B1LY45	7.9e-17	33.33	50S ribosomal protein L10 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]

BLAST of CcUC02G030860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUB8	4.3e-119	94.42	50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BDM0	4.3e-119	94.42	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]
A0A0A0KLL5	2.8e-118	94.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1	[more]
A0A6J1JII9	1.1e-114	91.85	50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FTN1	7.9e-113	90.52	50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CcUC02G030860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13510.1	6.3e-78	64.91	Ribosomal protein L10 family protein	[more]
AT3G12370.1	8.8e-48	63.01	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.290		coord: 182..225 e-value: 2.2E-12 score: 48.5
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 55..150 e-value: 2.6E-20 score: 72.4
IPR001790	Ribosomal protein L10P	PANTHER	PTHR11560	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	coord: 34..230
IPR001790	Ribosomal protein L10P	CDD	cd05797	Ribosomal_L10	coord: 54..211 e-value: 4.87027E-49 score: 156.125
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 52..181 e-value: 5.8E-30 score: 106.1
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 55..223
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 53..213 score: 18.550287

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030860.1	CcUC02G030860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome