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CcUC02G030280 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAGATTGAAGGTGCCATCAAGTGGGTCTGTGATGTTGGTAGATGGCTTTGACCTATCTTGCATTGATTGTCATTATAGGTAATGCTTTTGAGGAATCGTTTCTTATTTGAACATGATCTCTAAGGTCCTTGAGTAGTTTAGAGTCTCTAGATTAACAGCCTTTTAAGTATTTCATTGCATCAGGTGATGCAAGAGGAGGTGGGGAAACTAGCTTTCATTGAGGTAAATGAAAGAATACAAGAAGGGCCTATATATATCAAGAAGCAAGCAAGAAACTGAACTAATATGGTGATTTCACGCAGTATTAGAGCTGAAATCTTGAATTCAAATCTGTCTGTTTCTTCCGATATTAGTAGTCCGTATGTCGGAGTTGGTAAATTAAATTTGATATCAAAATCTACATGTTAGGGATAATGTTGAAGATATTCACATTTAATGAAATTGTTAGGTTTACTCTACAATCATTTTAGCTTGGTGGCAATCCTATCCCATTTCTTCATTGTTTTGGATTCCACTTGTTGAGAAGGTAGCCAAAATCCTTGGAAAATGGAGAATGCCTAGTTTTACTTGAGAGGATAGGCATGCTTTTATTTGGTGTATTTTGCCTCCACTACCATCTCCCTTTTTATGTTGTCTTGCACGCTAGTCATCATGCCAGTTCAATCTGGCGAACTAGTTTGTAGGCTCCGAGAACAAAATTCTTCAGAATGGAAATTTGGTTCGCCAAAAGAAGAAAAGAACCCCGTTATTTTGTTAGAGCTCTGGCACTAGTTTGGAGGCACTGAAAACTCCTTGATAGAGTAAACACTTGTGGCAATTGTTATTATGCCTTCCTTTCTATTGTAAAGTATAATTTGTTGATGGCATATTGGTGGATACTGAAACTTGAAGTTCGAGGTGTTTTCTGCGTATGTCTTAATTTTAGTGATATATTCACTAACCCAAAAGTATAGTGAAAATGAACGTTCTTACTACTTGGTCATGTTCTACAGGAGTTTTTATGCTTGAATGAATGTGCAAGAAAAATGCCCATAATGAACATAGAAATATTGTTATTTTGATGATGCATCATTTAACGTCTGAAATGTTTCTTAATTGTTCTTGAAGGACCCTTCTGACAAAAGGAGAATAATTTGTGACAAGAGGCTGAAAGAACTCTTCGATGTCGAATCCTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCACTCATTTTATAAAGACAAAATAGTGAGTTTTCTCCTACACATTGTCTTTGTTGATGCAAGAGAATCTAGAATTTTGCTTGAGATAGTTTTAGTGGCCTGTTCTTTGTGTGTTATTCTCTGGAATTCACCAACAAGGCAATGGAAAATCTGTTTTATTGACCTTGCAATCTCCTCTTTTGTGGGTGGTCTGTTGCAAAATCCTTCAGAACTAATTGAACTAACCATATCAATTCTTCTATACTTCCCTTAGATTATAAGTAGCAGCTAAGTTTTAAATTTTTTTTTAAAAAAAAAAAAAAAAAGGCGCATATTTGGCCAAATTCACAGTTTTTGTTTTGTTTTTATTTTGTTTATTGCTTACCAAATAAGCAGTTCTTTCCCTCATTCTTCTCTCCCCAACACTTCTATGAAACGTTCTTGATTGAAGAATGTGTTAACGCATGAGAAATTAAAAATGGGGGAAAGAAACTAGAAATTTTTGTATGCATGACCGTTTTACATGCTCTTTATGATTGATGGTCCGCCCCTTACAAACTTATAAAATCTAACATTTTGCTTACGTTAGAGCCCACTAACGCATTTTATGATGTGGTAGGGATGACCATGTCTATCGTAAACCTAACATGATGACCATGTCTATCGCAATCCTTATTTTCTCCACTCAAGCACAGTATTCACCGTGAAAAGCACAACAAACTATGAGAAAAATAAGGATCGCAATAGATACAGTCATCGTGTTAGAGCTACGATAGACATGATTATTCCTAATGCAATACATTAAAAAAAGGTAATAATGCGCTTTGATGTAAGTAGAAAGTTAGATTTCATATGTTTGTGAGGGACTTAATTTCTATAAACTAAAAATAAATATCTTCCAAATGTTTAACAAAGGGGACTTAAAATTTGTATCATTTTAATTTCTAATCATAACTACATTTTTTGATTTGGTCAGTGTCAAACTAATGTCACCGACCCCATTATAGACTTCTGTAAATTTTGAGCGGTTGAGAATTTAGGCTATGGAGTTGCCCCAATTGAATTCCTTTATCATCGGTCAATATAACCACATTTAAACATTAAATTTTTAAGAACTAATTCAATTTAGGCTGAAAAAATAGTTCTTTTAGGGAGTTACCACATGTGAAAAAAACTTAGTCAAGGTTATCGTTTTTGCATTTTACTGTAGATGATGTTCAAGTTTGATGAAAATGACATTAAAAAATAATATTCAATTTTTTTCCTTTTTTTTTTTTTTTTTAACTATGGCCATGGTTTGGTCCCTATTTGAAAGGGGAAGCATTGACTTTTTTCTTCATTTTAAAGGAGTACAATTGGCCGTTTCAAATGAGCTTCTCATTTTAATTTTTGGGTAAATTCGCAGACTTTGTTTGAGACCCCAAAATTTTCAACCAATAATCACTAAATATGAAAATAGATGCACCCAGAAAGAAAGAGAAACACCACAACAGCTAATTGAAAAATGATGCGAAAAAACTAAGGGTCTTTCAATCTCACTATAGGGGATGTCAAGTTTGATGCAAATGAACTTATGTATTCGATATTAAAAAAATAATAATAATAATAATAAATAAATAAATAGATTCGCAATGGCTACATTTTCATCATTTTCGAATGTAGGGTAGCATTGGCCTTTTCTCTTCGTTTCTAAAGGGTACTATCAACTCTTTTAAAAGAGTTTCCTTCTCGTTTTAATTTTAGGATAAATTCGTCAAAGATTGTTCTTGGGACAATCCCCAACTCTTAAAACCACAATCCCTAAATAAAAAAAGTTGTAGCACACCCAACAAGAAATAAGAAACCCACAACGGCTAATTGAAAGCATGCATGCTGAGAAAAAAAAAAAAAAACATACTTAGTCAAGGTCATCATTTTTAAGTTTTACTATGGCGCAATCCCATGTTGGATAACCTCCTAGGAATTTTTCTAGGAAGCATGTGAGTGAGGACAAAACACAGGACTCGTGTTAGTTTGTAGGGATAGTTTATACTCTTATAAGCAATTCAACATGACGTTGGCAGGACACAGGAGATGCAGAAGAATGTTAGGGTCATCAGTTGCTGAATCTAGATTCGGAATCTTGGGCTGGGACAATACATTACGTTTTTCTTGTTTTTTCTGTGTTAAATATAATTGCTTGAGGAAAAGTAATAAGTTAAGTTTGTAGGTGTAACAATAATTCTTGTTTACAAGGATTATTCAACTCAAATTAATTTCAAGATTATTATTGTGCCTTTGAATCTATTTTGACGTCTTTCAAGCTTACTCCATCTAAGTTAGGAAAGAACGTGAAAGACACATTTTTCTCAATGTTGTGCTAAATGGAC ATGAGGAGATTGAAGGTGCCATCAAGTGGGTCTGTGATGTTGGTAGATGGCTTTGACCTATCTTGCATTGATTGTCATTATAGTATTAGAGCTGAAATCTTGAATTCAAATCTGTCTGTTTCTTCCGATATTAGTAGTCCGTATGTCGGAGTTGCTTGGTGGCAATCCTATCCCATTTCTTCATTGTTTTGGATTCCACTTGTTGAGAAGGACCCTTCTGACAAAAGGAGAATAATTTGTGACAAGAGGCTGAAAGAACTCTTCGATGTCGAATCCTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCACTCATTTTATAAAGACAAAATAGACACAGGAGATGCAGAAGAATGTTAGGGTCATCAGTTGCTGAATCTAGATTCGGAATCTTGGGCTGGGACAATACATTACGTTTTTCTTGTTTTTTCTGTGTTAAATATAATTGCTTGAGGAAAAGTAATAAGTTAAGTTTGTAGGTGTAACAATAATTCTTGTTTACAAGGATTATTCAACTCAAATTAATTTCAAGATTATTATTGTGCCTTTGAATCTATTTTGACGTCTTTCAAGCTTACTCCATCTAAGTTAGGAAAGAACGTGAAAGACACATTTTTCTCAATGTTGTGCTAAATGGAC ATGAGGAGATTGAAGGTGCCATCAAGTGGGTCTGTGATGTTGGTAGATGGCTTTGACCTATCTTGCATTGATTGTCATTATAGTATTAGAGCTGAAATCTTGAATTCAAATCTGTCTGTTTCTTCCGATATTAGTAGTCCGTATGTCGGAGTTGCTTGGTGGCAATCCTATCCCATTTCTTCATTGTTTTGGATTCCACTTGTTGAGAAGGACCCTTCTGACAAAAGGAGAATAATTTGTGACAAGAGGCTGAAAGAACTCTTCGATGTCGAATCCTTTAACGGCTTCACTGTTTCGAAACTCCTGGCCACTCATTTTATAAAGACAAAATAG MRRLKVPSSGSVMLVDGFDLSCIDCHYSIRAEILNSNLSVSSDISSPYVGVAWWQSYPISSLFWIPLVEKDPSDKRRIICDKRLKELFDVESFNGFTVSKLLATHFIKTK Homology
BLAST of CcUC02G030280 vs. NCBI nr
Match: XP_038901460.1 (upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]) HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11 Identity = 37/41 (90.24%), Postives = 41/41 (100.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. NCBI nr
Match: XP_008457882.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11 Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0
BLAST of CcUC02G030280 vs. NCBI nr
Match: XP_004148436.1 (upstream activation factor subunit UAF30 [Cucumis sativus] >KGN62068.1 hypothetical protein Csa_006385 [Cucumis sativus]) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11 Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0
BLAST of CcUC02G030280 vs. NCBI nr
Match: XP_022928098.1 (upstream activation factor subunit UAF30-like [Cucurbita moschata]) HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11 Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. NCBI nr
Match: KAG7011165.1 (UAF30 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11 Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. ExPASy TrEMBL
Match: A0A0A0LJW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G295440 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 8.3e-12 Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0
BLAST of CcUC02G030280 vs. ExPASy TrEMBL
Match: A0A1S3C766 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103497460 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 8.3e-12 Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0
BLAST of CcUC02G030280 vs. ExPASy TrEMBL
Match: A0A6J1EMX5 (upstream activation factor subunit UAF30-like OS=Cucurbita moschata OX=3662 GN=LOC111434984 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11 Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. ExPASy TrEMBL
Match: A0A2N9FYE2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19992 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11 Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 0
BLAST of CcUC02G030280 vs. ExPASy TrEMBL
Match: A0A6J1I6I7 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111470389 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11 Identity = 34/41 (82.93%), Postives = 41/41 (100.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. TAIR 10
Match: AT3G19080.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10 Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0
BLAST of CcUC02G030280 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 48.5 bits (114), Expect = 3.9e-06 Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of CcUC02G030280 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04 Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0
BLAST of CcUC02G030280 vs. TAIR 10
Match: AT4G22360.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 41.6 bits (96), Expect = 4.8e-04 Identity = 17/38 (44.74%), Postives = 28/38 (73.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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