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CcUC02G030040 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATGTTTTATAGTTTTTATTTGTTCTTAAAAGTTACTCCGAAACATACTTTTAATTAAACTAATCTTATTCAATTGGTTGTAGAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTGTTTCAGATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA GCCAACAAAGTGAGAAATAAAGGGATGATTTCGAGGAAGAAACGATTAACCACAACCGAAGAAGCAAGAATAATGATTGAAAAAGCCTCGAAATTCAAAGCAATAACTACACATCCTTCTTTTATGATCATAATGAAACCTTCATACCTCCATGCAAGCAATAATTATCCAATAAGTTATAGTATTCCAAGAGAGCTTGCAAATACCCACCTGAAGGAAACCAAAAACTTAATTCTTCTTATGAAAAGGTTTGGAAGATATGTTACATCCAACGTTGGTGTCATGGAATACGAAGGTTTGTCGCAAAGGTTTGAAATGACAAGAGATAATAGTTTTAAAAAAAAAGATGATATTTGTGTTTTTGAGTTAATGAAAAACATTCAAATATCATTTAAAGCTACAATTTTTCGATTGCCTATGTGA ANKVRNKGMISRKKRLTTTEEARIMIEKASKFKAITTHPSFMIIMKPSYLHASNNYPISYSIPRELANTHLKETKNLILLMKRFGRYVTSNVGVMEYEGLSQRFEMTRDNSFKKKDDICVFELMKNIQISFKATIFRLPM Homology
BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_016902166.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]) HSP 1 Score: 87.4 bits (215), Expect = 1.0e-13 Identity = 65/136 (47.79%), Postives = 79/136 (58.09%), Query Frame = 0
BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_022928091.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]) HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10 Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of CcUC02G030040 vs. NCBI nr
Match: KAG7011178.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10 Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of CcUC02G030040 vs. NCBI nr
Match: KAG6571413.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10 Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of CcUC02G030040 vs. NCBI nr
Match: XP_022971710.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]) HSP 1 Score: 74.7 bits (182), Expect = 7.0e-10 Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 0
BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A1S4E1R2 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC107991566 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 5.1e-14 Identity = 65/136 (47.79%), Postives = 79/136 (58.09%), Query Frame = 0
BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1EJA7 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111434979 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.0e-10 Identity = 51/135 (37.78%), Postives = 76/135 (56.30%), Query Frame = 0
BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1I6H9 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111470377 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10 Identity = 52/135 (38.52%), Postives = 75/135 (55.56%), Query Frame = 0
BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A6J1E0D8 (B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LOC111024773 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08 Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 0
BLAST of CcUC02G030040 vs. ExPASy TrEMBL
Match: A0A0A0LM04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287160 PE=4 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06 Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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