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CcUC02G029470 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGAGTTGTACTTGCTTTGTCAAGATATTATTTAACTTATTATCATACTTTTATATAATCTAAAGTTATTACTCTATTATTTTATAACATGTTACCAACCTAAGTCTTTACCACATTGAATTTAAACTTGATTTATTAGACCATTGATATTATGAGCTTCTACCACTTTAAATTTATTATTATTTTTTATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTTAGGATTTTAAAATTACTATTATATCCTGTTATTCTGCAGATCAAGGTCCAGATCACATTCCCCATCACACTCAAGACATCATTCTCGTGGTCATTTTGATGATGTTCATCGGAGCAAACCAAGGACTCCAAAAATTGAATTCATCACTGAATTTGGGGGATCTGGCGAAAGCAAGGAACCGAGGCTAGAAGGACTATCTCCACCACAATCTCCTCCATCTCAGCCTGATATGATAAACCGGTCGGAGCACTCGACCTTTCATTATTGCGAAGATACATTGGACAATCTTTACTGTGCTGCAGCTTTCTCCCATTTTGTTACCTGAGGGTGTGGTTTAGTATAGATCAGGCCTTAGGATTTTCAGCGTAACTGCCCACGGCAAGATGGAAGGAGGCTTCCTTTTTGAAGCTCAGATATTCCCTAAAATGGATTTAACATAATCACTAGCAAATGTGCATGGAACTTTTATAATGGGCATCTCTTACCCTTGTGCTTTCATGCAGGCCATCATCTGGTCGGATCCTTGAGGCATTGCATATTGATCCAGCATCTGGCGTGACACTTGATAAAGAAAAGAGCAGCAGAGCAGTAAAACCATCAGTAAGGTATTTATGAAGTCTGAATTTACTTTAGTGTCAAGTCCTGTGAACTGATGTTATTGGTGTTTTAAAAAGCCCTCTCGGGCACACACCTAGGTGTAAGGCATAGACCTGGCACTTCACATTGTAAGGCATGCCTTTTGTGAAGTCCCATGGCTCAAAGCTCTGGGCTTGGGTGTTTTTTCATTATTTTTGAAAAATAGTAATAATTAGGGATTTTTCTTCTTTATTTCGTAAGAAAAATCAAATTTGCTAAGTCTAAATGCAAAATTTCTTGTGGTCAAGGTTTCTTTTCTTTTCTTTTCTTCTTTTTTTTTATTCCACATTCTCACTTTCTCTTCTTTATGTAGTACTTTTATATATATAGTGCGTCTCACAAAAAAAGTCGTGCTTTTTTTCCCACCTTACGAAGCGTAGAAGACTATTGTTCTTTATTATGCCTTAAGCTTTAAAAAACACGGATGCTTATACATTTCCAATACTAATGTTTGGTGCCTTTTGCATGTGAAGCTATTATGTTCTAAAGTTGATAAAATAATTATGGGCATTTAAGTCCTTGTCTTAACAATTTTAGGTTTTTGAGTCCTCATACAATAATTATTGGTTTTTGAGTTCTTGTACTATTATTATAGGCATTTGAGTCCTTGTACAATAATTACGAGTATTTGAATAATTATGGGCATTTAAGGCCTTCAGCAATAATTATGTAAATTTTTTTCCTTGAATAGTACGTCGTCAGCACTTGCAAAGTTAACGAAGGCAAGTTCTTCCGGAGGGCCTTTAAAGCAGGGGGAAAAGAAAGAAACTCCACAGGAACGACTTAAGAGGATCATGAGTCAACAGCTTAATAAACAAAGTATGTGTGCATTTTTCACTGTGAAGGGTCTTCTTTATGACATAAGAAATACGGACAGTCCAGTTTGGGTAATGTATTTGTGTTGGATGCTTTGACATTCTGACCTTTGTTGGACACTTTTTAGTACAATAGATATGTGTTGACACTAGTTGTACAAAGGCAATAGGTATCCAGCATTTGTTCGACATACATTGAACAATTTGTTAGGAGTATTAAATAGACACGTGATAATATATGACAAATATTAAACTTGGGCACAAGCTCATTTTTAAGCTCATGAATCCGTAAAACTTATTTGCTATCAATTTTAATATGGTTTATAAATGATATATGTTTTTAAAAATGCATATTTTAATAGATGTGTCCCTGTGGTGTTTGTGTCCTAGATTTTTAAAACAAACGACTTGGCACCATGTTCGGGTCATATCCTTATCTCGTATCTATATCCATACTTCTTAGGTTAACAGATCTGCCCTGGAACGTTATTGTGCCAATCAATGAACTTATGCCTTTTGACCCTTCTGCCCTTATGAATGTTTTGTATGGCAGCCATTTTTATTTCAAGATCTTTTGATATCTTCTCTGGCATTTATGGTTGAACATGCAGTTAAGAAAGATACAGCTGCAGAAATGGCTAAAAAGAGGGAGCAGGAGCGCCAGAGACTGGAAAAGCTGGCGGAAACTAGCCGATTAAATAGCCATAGGCGTCGGAGCCGTAGCAGAAGCTACAGCCGTTCACCGAGAAGGTACGCCTTTTTTTTGTTTTGAAGTTTTAACCAAATGGCTTGTGATCTCAAACCTGGAAGTAGTAATGTTTTTTTGGGATGTGATGATGGCGCTAGTTGAGATAGGTGGGTGTACGTGTGTGTGTTCGTGTTGAGATAGTTATGGATGTGTCAACCTAATTGAGATATGCGGGTGTGCGTGTCGATCCCCTAGTCTTCTTGGATTTTTGTTTTCTTACTAGTTTTATCTCACTATAGTTTGAGCATTAGGCTCTTTTCATTTCATCAATAAAACTACACTTTGTGGACTGTTCTGAGACCTTATTTCTGCT ATGCGTGAGTTATCAAGGTCCAGATCACATTCCCCATCACACTCAAGACATCATTCTCGTGGTCATTTTGATGATGTTCATCGGAGCAAACCAAGGACTCCAAAAATTGAATTCATCACTGAATTTGGGGGATCTGGCGAAAGCAAGGAACCGAGGCTAGAAGGACTATCTCCACCACAATCTCCTCCATCTCAGCCTGATATGATAAACCGGCCATCATCTGGTCGGATCCTTGAGGCATTGCATATTGATCCAGCATCTGGCGTGACACTTGATAAAGAAAAGAGCAGCAGAGCAGTAAAACCATCAGTAAGTACGTCGTCAGCACTTGCAAAGTTAACGAAGGCAAGTTCTTCCGGAGGGCCTTTAAAGCAGGGGGAAAAGAAAGAAACTCCACAGGAACGACTTAAGAGGATCATGATTAAGAAAGATACAGCTGCAGAAATGGCTAAAAAGAGGGAGCAGGAGCGCCAGAGACTGGAAAAGCTGGCGGAAACTAGCCGATTAAATAGCCATAGGCGTCGGAGCCGTAGCAGAAGCTACAGCCGTTCACCGAGAAGGTACGCCTTTTTTTTGTTTTGAAGTTTTAACCAAATGGCTTGTGATCTCAAACCTGGAAGTAGTAATGTTTTTTTGGGATGTGATGATGGCGCTAGTTGAGATAGGTGGGTGTACGTGTGTGTGTTCGTGTTGAGATAGTTATGGATGTGTCAACCTAATTGAGATATGCGGGTGTGCGTGTCGATCCCCTAGTCTTCTTGGATTTTTGTTTTCTTACTAGTTTTATCTCACTATAGTTTGAGCATTAGGCTCTTTTCATTTCATCAATAAAACTACACTTTGTGGACTGTTCTGAGACCTTATTTCTGCT ATGCGTGAGTTATCAAGGTCCAGATCACATTCCCCATCACACTCAAGACATCATTCTCGTGGTCATTTTGATGATGTTCATCGGAGCAAACCAAGGACTCCAAAAATTGAATTCATCACTGAATTTGGGGGATCTGGCGAAAGCAAGGAACCGAGGCTAGAAGGACTATCTCCACCACAATCTCCTCCATCTCAGCCTGATATGATAAACCGGCCATCATCTGGTCGGATCCTTGAGGCATTGCATATTGATCCAGCATCTGGCGTGACACTTGATAAAGAAAAGAGCAGCAGAGCAGTAAAACCATCAGTAAGTACGTCGTCAGCACTTGCAAAGTTAACGAAGGCAAGTTCTTCCGGAGGGCCTTTAAAGCAGGGGGAAAAGAAAGAAACTCCACAGGAACGACTTAAGAGGATCATGATTAAGAAAGATACAGCTGCAGAAATGGCTAAAAAGAGGGAGCAGGAGCGCCAGAGACTGGAAAAGCTGGCGGAAACTAGCCGATTAAATAGCCATAGGCGTCGGAGCCGTAGCAGAAGCTACAGCCGTTCACCGAGAAGGTACGCCTTTTTTTTGTTTTGA MRELSRSRSHSPSHSRHHSRGHFDDVHRSKPRTPKIEFITEFGGSGESKEPRLEGLSPPQSPPSQPDMINRPSSGRILEALHIDPASGVTLDKEKSSRAVKPSVSTSSALAKLTKASSSGGPLKQGEKKETPQERLKRIMIKKDTAAEMAKKREQERQRLEKLAETSRLNSHRRRSRSRSYSRSPRRYAFFLF Homology
BLAST of CcUC02G029470 vs. NCBI nr
Match: XP_038901180.1 (CLK4-associating serine/arginine rich protein isoform X1 [Benincasa hispida]) HSP 1 Score: 321.6 bits (823), Expect = 4.5e-84 Identity = 180/190 (94.74%), Postives = 182/190 (95.79%), Query Frame = 0
BLAST of CcUC02G029470 vs. NCBI nr
Match: XP_004149706.3 (CLK4-associating serine/arginine rich protein isoform X1 [Cucumis sativus] >KGN62059.2 hypothetical protein Csa_006499 [Cucumis sativus]) HSP 1 Score: 316.6 bits (810), Expect = 1.5e-82 Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0
BLAST of CcUC02G029470 vs. NCBI nr
Match: XP_031736372.1 (CLK4-associating serine/arginine rich protein isoform X2 [Cucumis sativus]) HSP 1 Score: 316.6 bits (810), Expect = 1.5e-82 Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0
BLAST of CcUC02G029470 vs. NCBI nr
Match: XP_008457790.1 (PREDICTED: CLK4-associating serine/arginine rich protein isoform X1 [Cucumis melo]) HSP 1 Score: 314.3 bits (804), Expect = 7.3e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. NCBI nr
Match: TYJ99490.1 (CLK4-associating serine/arginine rich protein isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 314.3 bits (804), Expect = 7.3e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. ExPASy TrEMBL
Match: A0A0A0LJB3 (DRY_EERY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G277020 PE=4 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 7.1e-83 Identity = 178/190 (93.68%), Postives = 179/190 (94.21%), Query Frame = 0
BLAST of CcUC02G029470 vs. ExPASy TrEMBL
Match: A0A5D3BI48 (CLK4-associating serine/arginine rich protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00560 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. ExPASy TrEMBL
Match: A0A5A7TW82 (CLK4-associating serine/arginine rich protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003130 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. ExPASy TrEMBL
Match: A0A1S3C6Z9 (CLK4-associating serine/arginine rich protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497395 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. ExPASy TrEMBL
Match: A0A1S3C7M4 (CLK4-associating serine/arginine rich protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497395 PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82 Identity = 177/190 (93.16%), Postives = 178/190 (93.68%), Query Frame = 0
BLAST of CcUC02G029470 vs. TAIR 10
Match: AT4G36980.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). ) HSP 1 Score: 196.1 bits (497), Expect = 2.7e-50 Identity = 122/194 (62.89%), Postives = 151/194 (77.84%), Query Frame = 0
BLAST of CcUC02G029470 vs. TAIR 10
Match: AT4G36980.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). ) HSP 1 Score: 196.1 bits (497), Expect = 2.7e-50 Identity = 122/194 (62.89%), Postives = 151/194 (77.84%), Query Frame = 0
BLAST of CcUC02G029470 vs. TAIR 10
Match: AT4G36980.4 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). ) HSP 1 Score: 196.1 bits (497), Expect = 2.7e-50 Identity = 122/194 (62.89%), Postives = 151/194 (77.84%), Query Frame = 0
BLAST of CcUC02G029470 vs. TAIR 10
Match: AT4G36980.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). ) HSP 1 Score: 196.1 bits (497), Expect = 2.7e-50 Identity = 122/194 (62.89%), Postives = 151/194 (77.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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