CcUC02G029260 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G029260
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionzf-RVT domain-containing protein
LocationCicolChr02: 24162338 .. 24163620 (-)
RNA-Seq ExpressionCcUC02G029260
SyntenyCcUC02G029260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAAAAACAACGGGAGACGTTGATGTTAGAAGATGTGGAGGAAATCCTTCGAATTCTTGTATATCCAACTAATAGGGCTGATCGTTGGATTTGGCACTATGGTAACAAGGGGGAGTACTCAGTGAAGAGCGGCTATAAATGTGCTATTTTTCATAAAATTTTGAGCTGGGGGTACGGGTCAGTTGTTGGGACGGCGTGGTGGAATCATCTTTGGAAGCTTCCTATTCCTGCTAAAGTTGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTGGCGTTTGTTCCACTGCATAGAGGTATAGCAGTTCGTCCTTGGTGTCAGGTATGTAAGGAGAAATCAGCGGGCTCTATTTGGGTGTAGTCGTGCTAAATGCATCTGGTCGTCTTTATTTGGATCAAGATGGTGTGTTAATGCTAAGCACTTTAGTTGTCTGGATATATGGATTGAGTTGTCTAATGATGATTTAGCTTGTGATTGTATAACTGCTTGGGCCATTTGGGGGATCGAAATAAAGTTGTTCATTCAGCTCTTGTCCCTTCGGTGGACAAAAATATGTCTGACTTGTTGGACAAAAATCTTAACATTATTCATTGTGATGCTGCCTTTAAACTTGGTGATCACATAGTGGAAACTGGTGGGGTTGTTGATTCATCATCAGGAGAGAACTTAGCCTCTTTGAGTGGGTTCAGAGATTTCTCTGAGAATGCTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCNTCGTTCTAGTGCCCGAAAATAATATTCCAAAGCTTTCGTATGTTCTCCGTTCCTTGTGTGGATAAGACCTATGTTATAGAGTATATAACTTCGATCATAGGGATCGATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACGGTCGTTCGTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTTTCATCTCATACGGCTCCCCCTTTATGTGATGCGCATAATGAGATGAGAATAATACATGAAATCAAAAAAGATTGAAATACTCTCATTATGAACTCATGGGACTAGCGTTTTTACAAAAAATCTCTAGCCAACCTTCCTGTAAAAGATCTTTTCTTAACATCAAGCATGGTGTTACTAGATAAAAAAAAAAGGGTAACTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACA

mRNA sequence

ATGCATCAAAAACAACGGGAGACGTTGATGTTAGAAGATGTGGAGGAAATCCTTCGAATTCTTGTATATCCAACTAATAGGGCTGATCGTTGGATTTGGCACTATGGTAACAAGGGGGAGTACTCAGTGAAGAGCGGCTATAAATGTGCTATTTTTCATAAAATTTTGAGCTGGGGGTACGGGTCAGTTGTTGGGACGGCGTGGTGGAATCATCTTTGGAAGCTTCCTATTCCTGCTAAAGTTGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTGGCGTTTGTTCCACTGCATAGAGGTATAGCAGTTCGTCCTTGGTGTCAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACGGTCGTTCGTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTTTCATCTCATACGGCTCCCCCTTTATATAAAAAAAAAAGGGTAACTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACA

Coding sequence (CDS)

ATGCATCAAAAACAACGGGAGACGTTGATGTTAGAAGATGTGGAGGAAATCCTTCGAATTCTTGTATATCCAACTAATAGGGCTGATCGTTGGATTTGGCACTATGGTAACAAGGGGGAGTACTCAGTGAAGAGCGGCTATAAATGTGCTATTTTTCATAAAATTTTGAGCTGGGGGTACGGGTCAGTTGTTGGGACGGCGTGGTGGAATCATCTTTGGAAGCTTCCTATTCCTGCTAAAGTTGCTTTGTTTGTTTGGAAGTCATGCCATGAGAGTATTCTGGCGTTTGTTCCACTGCATAGAGGTATAGCAGTTCGTCCTTGGTGTCAGCTTCCGCATAATTTCCTTCGGATTGAGCCGACATCCGTTACGGTCGTTCGTTATTCCATTCAAAGAATCTCCGTTCCAGAACCGTACGTGAGATTTTCATCTCATACGGCTCCCCCTTTATATAAAAAAAAAAGGGTAACTCTAACAATTTCTTTGTCCTCAACGCCTCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCGATGGTTCTACA

Protein sequence

MHQKQRETLMLEDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHLWKLPIPAKVALFVWKSCHESILAFVPLHRGIAVRPWCQLPHNFLRIEPTSVTVVRYSIQRISVPEPYVRFSSHTAPPLYKKKRVTLTISLSSTPLNFQELVTSTVFDGST
Homology
BLAST of CcUC02G029260 vs. NCBI nr
Match: XP_030479077.1 (uncharacterized protein LOC115696311 [Cannabis sativa])

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-12
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 13  DVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHL 72
           D++ IL + + P +R DR IWH+ + G Y+VKSGY  A+    ++    S +   WWN L
Sbjct: 787 DIDRILSLSISPNSREDRLIWHHSDFGSYTVKSGYHLAVQLDKINESSTSDLNHGWWNRL 846

Query: 73  WKLPIPAKVALFVWKSCHESILAFVPL-HRGIAVRPWCQL 112
           W L +P KV +F W+  ++++   V L HR I+V   C L
Sbjct: 847 WALKLPKKVKIFAWRVINDALPTQVNLMHRKISVVASCSL 886

BLAST of CcUC02G029260 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-11
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 0

Query: 12   EDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNH 71
            ED + IL + +   N  D W+WHY  +G YSV+SGYK  +  K  +    +      WN 
Sbjct: 1075 EDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNS 1134

Query: 72   LWKLPIPAKVALFVWKSCHESI-LAFVPLHRGIAVRPWCQL 112
            +WKL +P K+ +F+W+S HE I  A   L RGI   P C +
Sbjct: 1135 IWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTI 1175

BLAST of CcUC02G029260 vs. NCBI nr
Match: TXG50764.1 (hypothetical protein EZV62_023288 [Acer yangbiense])

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-11
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 6   RETLMLEDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVG 65
           R   + ++VE IL I +   +R D ++WH+  KG++S+KS YK A+  ++      S   
Sbjct: 149 RSCFLGDEVELILSIPLSINHREDAYLWHFDKKGKFSIKSAYKVALADQLNDQASCSYGL 208

Query: 66  TAWWNHLWKLPIPAKVALFVWKSCHESILAFVPLH-RGIAVRPWCQLPHNFLRIEPTSV 124
             WW  LW L +P+K+ +F WK+C E +   + L+ RG+ V   C     F   EP SV
Sbjct: 209 LTWWKKLWSLELPSKIRIFYWKACKEILPTMLLLYKRGMVVSDLCP----FCGDEPESV 263

BLAST of CcUC02G029260 vs. NCBI nr
Match: KAF4380039.1 (hypothetical protein F8388_018163 [Cannabis sativa])

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 13  DVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHL 72
           D+E IL I + PT R D  IWH+ + G+Y+VKSGY  A   + +     S     WWN L
Sbjct: 491 DIERILSIPLAPTPREDTLIWHHSDTGDYTVKSGYHLAASLESMEADSPSSSNRQWWNRL 550

Query: 73  WKLPIPAKVALFVWKSCHESI-LAFVPLHRGIAVRPWCQL 112
           W L +P KV +F W+  ++++  A   +HR I+    C L
Sbjct: 551 WSLKLPKKVKIFAWRFINDALPTAANLMHRKISTSSACSL 590

BLAST of CcUC02G029260 vs. NCBI nr
Match: XP_017250619.1 (PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 0

Query: 6    RETLMLEDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAI-FHKILSWGYGSVV 65
            R+T +  D++ IL I +   + AD W WHY ++G Y+VKSGYK     +K +S     V+
Sbjct: 1189 RQTFLSPDIQLILEIPLSRFDHADSWFWHYNSQGNYTVKSGYKLVTNLNKDVSSSSEQVM 1248

Query: 66   GTAWWNHLWKLPIPAKVALFVWKSCHESILAFVPLH-RGIAVRPWCQL 112
            G  WW + W   IP K+ +F W+  HE +     LH R I++   C L
Sbjct: 1249 G-KWWKYFWANKIPRKILIFAWRGYHEILPTTKGLHIRKISLHSNCPL 1295

BLAST of CcUC02G029260 vs. ExPASy TrEMBL
Match: A0A803QG02 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-12
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 13  DVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHL 72
           D++ IL + + P +R DR IWH+ + G Y+VKSGY  A+    ++    S +   WWN L
Sbjct: 706 DIDRILSLSISPNSREDRLIWHHSDFGSYTVKSGYHLAVQLDKINESSTSDLNHGWWNRL 765

Query: 73  WKLPIPAKVALFVWKSCHESILAFVPL-HRGIAVRPWCQL 112
           W L +P KV +F W+  ++++   V L HR I+V   C L
Sbjct: 766 WALKLPKKVKIFAWRVINDALPTQVNLMHRKISVVASCSL 805

BLAST of CcUC02G029260 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.1e-12
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 0

Query: 12   EDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNH 71
            ED + IL + +   N  D W+WHY  +G YSV+SGYK  +  K  +    +      WN 
Sbjct: 1075 EDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNS 1134

Query: 72   LWKLPIPAKVALFVWKSCHESI-LAFVPLHRGIAVRPWCQL 112
            +WKL +P K+ +F+W+S HE I  A   L RGI   P C +
Sbjct: 1135 IWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTI 1175

BLAST of CcUC02G029260 vs. ExPASy TrEMBL
Match: A0A803QFX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 0

Query: 13  DVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHL 72
           D++ IL I +      D+W WHY + G Y+VKSGY  A+       G  SV   +WWN L
Sbjct: 61  DIDAILSIPLRNGGCEDQWCWHYTSNGCYTVKSGYVVALDLATERNGGSSVNQASWWNDL 120

Query: 73  WKLPIPAKVALFVWKSCHESILAFVPL-HRGIAVRPWC 110
           WKL IP KV +F+W+  H ++ A   L  R I V+P C
Sbjct: 121 WKLKIPQKVKIFLWRMYHRALPANSQLIKRNIPVQPIC 158

BLAST of CcUC02G029260 vs. ExPASy TrEMBL
Match: A0A5C7H1A9 (zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023288 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 6   RETLMLEDVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVG 65
           R   + ++VE IL I +   +R D ++WH+  KG++S+KS YK A+  ++      S   
Sbjct: 149 RSCFLGDEVELILSIPLSINHREDAYLWHFDKKGKFSIKSAYKVALADQLNDQASCSYGL 208

Query: 66  TAWWNHLWKLPIPAKVALFVWKSCHESILAFVPLH-RGIAVRPWCQLPHNFLRIEPTSV 124
             WW  LW L +P+K+ +F WK+C E +   + L+ RG+ V   C     F   EP SV
Sbjct: 209 LTWWKKLWSLELPSKIRIFYWKACKEILPTMLLLYKRGMVVSDLCP----FCGDEPESV 263

BLAST of CcUC02G029260 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 38/98 (38.78%), Postives = 51/98 (52.04%), Query Frame = 0

Query: 13   DVEEILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFHKILSWGYGSVVGTAWWNHL 72
            D E IL++     +  D+ +WHY   GEYSV+SGY+ A   ++      +     WW  L
Sbjct: 1537 DAELILQMATSECDIEDKILWHYSKDGEYSVRSGYRMAAALEVRDIQSNTEATNRWWRQL 1596

Query: 73   WKLPIPAKVALFVWKSCHESILAFVPL-HRGIAVRPWC 110
            WKL IP KV  FVWK  H  I     L HR + + P+C
Sbjct: 1597 WKLKIPPKVKHFVWKMAHSWIPTNSALAHRKVQIEPYC 1634

BLAST of CcUC02G029260 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.5e-05
Identity = 29/103 (28.16%), Postives = 50/103 (48.54%), Query Frame = 0

Query: 17  ILRILVYPTNRADRWIWHYGNKGEYSVKSGYKCAIFH-----KILSWGYGSVVGTAWWNH 76
           I RI +  + + D+ IW+Y   GEY+V+SGY             ++  +GS+        
Sbjct: 105 IHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSI---DLKTR 164

Query: 77  LWKLPIPAKVALFVWKSCHESILAFVPL-HRGIAVRPWCQLPH 114
           +W LPI  K+  F+W++  +++     L  RG+ + P C   H
Sbjct: 165 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCH 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030479077.19.8e-1238.00uncharacterized protein LOC115696311 [Cannabis sativa][more]
XP_022158377.11.7e-1138.61uncharacterized protein LOC111024874 [Momordica charantia][more]
TXG50764.12.8e-1134.45hypothetical protein EZV62_023288 [Acer yangbiense][more]
KAF4380039.14.8e-1138.00hypothetical protein F8388_018163 [Cannabis sativa][more]
XP_017250619.16.3e-1137.04PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803QG024.7e-1238.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1DX308.1e-1238.61uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QFX11.1e-1141.84Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5C7H1A91.4e-1134.45zf-RVT domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023288 P... [more]
A0A803PV252.3e-1138.78Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09510.12.5e-0528.16Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G029260.1CcUC02G029260.1mRNA