CcUC02G028990 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G028990
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 23813333 .. 23813937 (-)
RNA-Seq ExpressionCcUC02G028990
SyntenyCcUC02G028990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACGTGTCAGTAAGCAAAAACATTATAAATTTTGAGTGGAATAAATTTCCAACCAATCATATGCATCCACAAATCATAATATTATATAACATTACAAGTAAATCTCAGTTTTAATTACACATCACTACACTGATCACCCCCAAGGAAAATACTGGGAAAATTACATAAATATTTTTAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATTTTTTTTTTAAAATCAAAGTTTCTGTTTCTATCCGCCAGTCAACTGGAAGCTTGATCGGAATTTTATATTCATCGTGGACGACTACCACCGGCGGACTCCAGCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA

mRNA sequence

ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA

Coding sequence (CDS)

ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA

Protein sequence

MLTDNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGGDGGGWRRGGVREEVFEAGVGLKRGHFDVGEF
Homology
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BLAST of CcUC02G028990 vs. NCBI nr
Match: KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 0 

Query: 4  DNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGG 63
          D+ GEPLDA++TVLLE   +G V G G  EHGLKVG+GGVFDK V DGE      VEG G
Sbjct: 2  DDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGEL-----VEGWG 61

Query: 64 DGGGWRRGGVREEVFEAGVGLKRGHFD-VGEF 95
           GG  RR GV EEVFEAGVGLKRGHFD VGEF
Sbjct: 62 GGGWGRRRGVGEEVFEAGVGLKRGHFDVVGEF 88

The following BLAST results are available for this feature:
BLAST of CcUC02G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62004.27.8e-2168.48hypothetical protein Csa_005914 [Cucumis sativus][more]
BLAST of CcUC02G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G028990 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G028990.1CcUC02G028990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
cellular_component GO:0000421 autophagosome membrane