Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAC GTGTCAGTAAGCAAAAACATTATAAATTTTGAGTGGAATAAATTTCCAACCAATCATATGCATCCACAAATCATAATATTATATAACATTACAAGTAAATCTCAGTTTTAATTACACATCACTACACTGATCACCCCCAAGGAAAATACTGGGAAAATTACATAAATATTTTTAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATTTTTTTTTTAAAATCAAAGTTTCTGTTTCTATCCGCCAGTCAACTGGAAGCTTGATCGGAATTTTATATTCATCGTGGACGACTACCACCGGCGGACTCCAGCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA mRNA sequence
ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA Coding sequence (CDS)
ATGTTGACCGACAACAGCGGCGAGCCACTCGATGCATCCGAAACCGTGCTTCTTGAGCCTGCGCATGAAGGTACGGTCGCCGGCGACGGGCGGCCTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACAAGTGGGTTTTTGATGGGGAGTTCGTCCCAGGCGGGGCAGTGGAGGGGGGCGGCGACGGCGGAGGGTGGCGGCGAGGGGGAGTCCGGGAGGAGGTCTTTGAGGCTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCTGA Protein sequence
MLTDNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGGDGGGWRRGGVREEVFEAGVGLKRGHFDVGEF
Homology
BLAST of CcUC02G028990 vs. NCBI nr
Match:
KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])
HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 63/92 (68.48%), Postives = 68/92 (73.91%), Query Frame = 0
Query: 4 DNSGEPLDASETVLLEPAHEGTVAGDGRPEHGLKVGQGGVFDKWVFDGEFVPGGAVEGGG 63 D+ GEPLDA++TVLLE +G V G G EHGLKVG+GGVFDK V DGE VEG G Sbjct: 2 DDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGEL-----VEGWG 61 Query: 64 DGGGWRRGGVREEVFEAGVGLKRGHFD-VGEF 95 GG RR GV EEVFEAGVGLKRGHFD VGEF Sbjct: 62 GGGWGRRRGVGEEVFEAGVGLKRGHFDVVGEF 88
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KGN62004.2 7.8e-21 68.48 hypothetical protein Csa_005914 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
A T G T T G A C C G A C A A C A G C G G C G A G C C A C T C G A T G C A T C C G A A A C C G T G C T T C T T G A G C C T G C G C A T G A A G G T A C G G T C G C C G G C G A C G G G C G G C C T G A G C A T G G G C T G A A G G T A G G C C A A G G C G G C G T G T T T G A C A A G T G G G T T T T T G A T G G G G A G T T C G T C C C A G G C G G G G C A G T G G A G G G G G G C G G C G A C G G C G G A G G G T G G C G G C G A G G G G G A G T C C G G G A G G A G G T C T T T G A G G C T G G T G T A G G A T T G A A G A G G G G T C A T T T C G A T G T C G G A G A A T T C T G A 20 40 60 80 100 120 140 160 180 200 220 240 260 280 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..34
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0000045
autophagosome assembly
cellular_component
GO:0000421
autophagosome membrane