CcUC02G028670 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G028670
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionATP synthase subunit alpha
LocationCicolChr02: 23295989 .. 23296593 (-)
RNA-Seq ExpressionCcUC02G028670
SyntenyCcUC02G028670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATTGAGATTTTCCGGTAATGGTTTTTTCGCCGGACATGTCACGGGTTTTCTTGTTATTACCTGAATCATCTTCGGTCCGTACCCGATTGAGCATAAGAAGTTTATGTAATCGGCGTTCGTAATGTCGTAGACTAGACCTGGGTCCATTGCGAGCCCCAAATTTACATGTCCGGCACCGAAATCGTAAGGAGTTGAAGCTTTTCCGGTGGATTCTTCCGTCATTGGTTGGCGGCGGTTATCGGTAATACTTGCGGTGGTCATCATGGCGGATCGTAACGCTGCTGGACTCCAATCTGGGTGAGCTGATTTCAACAGAGCAGCAGCTCCACTTACATGGGGGCAAGCCATTGATGTACCGGACAAGATGTTGAACTCTGTTTTTCGCGTATCGAAGTCCAAACCGGTTGGACCAACGGCGTCGGTCCAGGCGGCGAGAATGTTAACCCCTGGTGCGATTAAGTCTGGTTTTAGAATTTCTGGGTTTAATCCGTTTGGCCCTCTGGCGGAAAACGAAGCCACAACTGGCGCCGGTTTGATTCCGATTATAGTGCCTTGGAAGGCGATGGTGGCGGTGGGATTTGCGGAGGACGATGCGTAG

mRNA sequence

ATGGACCTGGGTCCATTGCGAGCCCCAAATTTACATGTCCGGCACCGAAATCGTAAGGAGTTGAAGCTTTTCCGGTGGATTCTTCCGTCATTGGTTGGCGGCGGTTATCGAGCAGCAGCTCCACTTACATGGGGGCAAGCCATTGATGTACCGGACAAGATGTTGAACTCTGTTTTTCGCGTATCGAAGTCCAAACCGGTTGGACCAACGGCGTCGGTCCAGGCGGCGAGAATGTTAACCCCTGGTGCGATTAAGTCTGGTTTTAGAATTTCTGGGTTTAATCCGTTTGGCCCTCTGGCGGAAAACGAAGCCACAACTGGCGCCGGTTTGATTCCGATTATAGTGCCTTGGAAGGCGATGGTGGCGGTGGGATTTGCGGAGGACGATGCGTAG

Coding sequence (CDS)

ATGGACCTGGGTCCATTGCGAGCCCCAAATTTACATGTCCGGCACCGAAATCGTAAGGAGTTGAAGCTTTTCCGGTGGATTCTTCCGTCATTGGTTGGCGGCGGTTATCGAGCAGCAGCTCCACTTACATGGGGGCAAGCCATTGATGTACCGGACAAGATGTTGAACTCTGTTTTTCGCGTATCGAAGTCCAAACCGGTTGGACCAACGGCGTCGGTCCAGGCGGCGAGAATGTTAACCCCTGGTGCGATTAAGTCTGGTTTTAGAATTTCTGGGTTTAATCCGTTTGGCCCTCTGGCGGAAAACGAAGCCACAACTGGCGCCGGTTTGATTCCGATTATAGTGCCTTGGAAGGCGATGGTGGCGGTGGGATTTGCGGAGGACGATGCGTAG

Protein sequence

MDLGPLRAPNLHVRHRNRKELKLFRWILPSLVGGGYRAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFGPLAENEATTGAGLIPIIVPWKAMVAVGFAEDDA
Homology
BLAST of CcUC02G028670 vs. NCBI nr
Match: PON90003.1 (hypothetical protein TorRG33x02_142890 [Trema orientale])

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 37  RAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPF 96
           RAAAPLTWGQAIDVPD+MLNSVFRVS+S PVGPTASV AARMLTPGAIKSG RISGF  F
Sbjct: 32  RAAAPLTWGQAIDVPDRMLNSVFRVSESNPVGPTASVHAARMLTPGAIKSGLRISGFRVF 91

Query: 97  GPLAENEATTGAGLIPIIVPWKAMVAVGFAEDD 130
           GPL E EAT GAGLIPI VPWK+MVAVGF  DD
Sbjct: 92  GPLPEKEATIGAGLIPITVPWKSMVAVGFLPDD 124

BLAST of CcUC02G028670 vs. NCBI nr
Match: PON57783.1 (hypothetical protein PanWU01x14_171450 [Parasponia andersonii])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 74/93 (79.57%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 37  RAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPF 96
           RAAAP TWGQAIDVPD+MLNSVFRVS+S PVGP ASV AARMLTPGAIKSG RISG +  
Sbjct: 32  RAAAPPTWGQAIDVPDRMLNSVFRVSESNPVGPIASVHAARMLTPGAIKSGLRISGLSVL 91

Query: 97  GPLAENEATTGAGLIPIIVPWKAMVAVGFAEDD 130
           GPL E EAT GAGLIPI VPWK+MVAVG   DD
Sbjct: 92  GPLPEKEATIGAGLIPITVPWKSMVAVGLLSDD 124

BLAST of CcUC02G028670 vs. NCBI nr
Match: CAA7391399.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 38  AAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFG 97
           AAAPLTWG A++VP++MLNSVFR S S PVGPTASV AARMLTPGAI+SG   +G +PFG
Sbjct: 15  AAAPLTWGHAMEVPERMLNSVFRSSMSSPVGPTASVHAARMLTPGAIRSGLSTAGESPFG 74

Query: 98  PLAENEATTGAGLIPIIVPWKAMVAVGFAEDDA 131
           P  E +AT GAGL+PIIVPWK+MVAVG  E++A
Sbjct: 75  PRPEKDATKGAGLMPIIVPWKSMVAVGLGEEEA 107

BLAST of CcUC02G028670 vs. NCBI nr
Match: CAA2616303.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-25
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 38  AAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFG 97
           AAAPLTWG A++VP++MLNSVFR S S PVGPTASV AARMLTPGAI+SG   +G +PFG
Sbjct: 15  AAAPLTWGHAMEVPERMLNSVFRSSMSSPVGPTASVHAARMLTPGAIRSGLSTAGESPFG 74

Query: 98  PLAENEATTGAGLIPIIVPWKAMVAVGFA 127
           P  E +AT GAGL+PIIVPWK     G+A
Sbjct: 75  PRPEKDATKGAGLMPIIVPWKRWWPSGWA 103

BLAST of CcUC02G028670 vs. NCBI nr
Match: CAB3501446.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0

Query: 38  AAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFG 97
           AAAPL  G A+DVPD+MLNSV R S S PVGP A V AARMLTPGA+KSGFRISG +P G
Sbjct: 93  AAAPLACGHAMDVPDRMLNSVRRASPSSPVGPAAPVHAARMLTPGAMKSGFRISGTSPLG 152

Query: 98  PLAENEATTGAGLIPIIVPWKAMVAVG 125
           P AEN+ATTGAGL P  VP K MVAVG
Sbjct: 153 PRAENDATTGAGLTPTTVPPKVMVAVG 179

BLAST of CcUC02G028670 vs. ExPASy TrEMBL
Match: A0A2P5EWV5 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142890 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.3e-36
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0

Query: 37  RAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPF 96
           RAAAPLTWGQAIDVPD+MLNSVFRVS+S PVGPTASV AARMLTPGAIKSG RISGF  F
Sbjct: 32  RAAAPLTWGQAIDVPDRMLNSVFRVSESNPVGPTASVHAARMLTPGAIKSGLRISGFRVF 91

Query: 97  GPLAENEATTGAGLIPIIVPWKAMVAVGFAEDD 130
           GPL E EAT GAGLIPI VPWK+MVAVGF  DD
Sbjct: 92  GPLPEKEATIGAGLIPITVPWKSMVAVGFLPDD 124

BLAST of CcUC02G028670 vs. ExPASy TrEMBL
Match: A0A2P5C9S8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171450 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.7e-33
Identity = 74/93 (79.57%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 37  RAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPF 96
           RAAAP TWGQAIDVPD+MLNSVFRVS+S PVGP ASV AARMLTPGAIKSG RISG +  
Sbjct: 32  RAAAPPTWGQAIDVPDRMLNSVFRVSESNPVGPIASVHAARMLTPGAIKSGLRISGLSVL 91

Query: 97  GPLAENEATTGAGLIPIIVPWKAMVAVGFAEDD 130
           GPL E EAT GAGLIPI VPWK+MVAVG   DD
Sbjct: 92  GPLPEKEATIGAGLIPITVPWKSMVAVGLLSDD 124

BLAST of CcUC02G028670 vs. ExPASy TrEMBL
Match: A0A7I8K3C2 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002712 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.0e-30
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 38  AAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFG 97
           AAAPLTWG A++VP++MLNSVFR S S PVGPTASV AARMLTPGAI+SG   +G +PFG
Sbjct: 15  AAAPLTWGHAMEVPERMLNSVFRSSMSSPVGPTASVHAARMLTPGAIRSGLSTAGESPFG 74

Query: 98  PLAENEATTGAGLIPIIVPWKAMVAVGFAEDDA 131
           P  E +AT GAGL+PIIVPWK+MVAVG  E++A
Sbjct: 75  PRPEKDATKGAGLMPIIVPWKSMVAVGLGEEEA 107

BLAST of CcUC02G028670 vs. ExPASy TrEMBL
Match: A0A7I8IF27 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002525 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 38  AAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPFG 97
           AAAPLTWG A++VP++MLNSVFR S S PVGPTASV AARMLTPGAI+SG   +G +PFG
Sbjct: 15  AAAPLTWGHAMEVPERMLNSVFRSSMSSPVGPTASVHAARMLTPGAIRSGLSTAGESPFG 74

Query: 98  PLAENEATTGAGLIPIIVPWKAMVAVGFA 127
           P  E +AT GAGL+PIIVPWK     G+A
Sbjct: 75  PRPEKDATKGAGLMPIIVPWKRWWPSGWA 103

BLAST of CcUC02G028670 vs. ExPASy TrEMBL
Match: A0A218VZH8 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017166 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 58/89 (65.17%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 37  RAAAPLTWGQAIDVPDKMLNSVFRVSKSKPVGPTASVQAARMLTPGAIKSGFRISGFNPF 96
           RAA PLTWGQ +DVP+ MLNS +R S   PVGPTA VQ A+MLTPGAI+SG R+ G    
Sbjct: 19  RAARPLTWGQDMDVPEIMLNSTWRSSTESPVGPTAPVQPAKMLTPGAIRSGLRMPGATVL 78

Query: 97  GPLAENEATTGAGLIPIIVPWKAMVAVGF 126
           GPL  N ATTGAG IP +VP K +VAVGF
Sbjct: 79  GPLELNAATTGAGWIPTLVPSKKIVAVGF 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON90003.16.9e-3684.95hypothetical protein TorRG33x02_142890 [Trema orientale][more]
PON57783.11.6e-3279.57hypothetical protein PanWU01x14_171450 [Parasponia andersonii][more]
CAA7391399.11.7e-2970.97unnamed protein product [Spirodela intermedia][more]
CAA2616303.12.5e-2568.54unnamed protein product [Spirodela intermedia][more]
CAB3501446.14.2e-2573.56unnamed protein product [Digitaria exilis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5EWV53.3e-3684.95Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142890 PE=4 SV... [more]
A0A2P5C9S87.7e-3379.57Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171450 PE... [more]
A0A7I8K3C28.0e-3070.97Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_02002712 PE=4 SV... [more]
A0A7I8IF271.2e-2568.54Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002525 PE=4 SV... [more]
A0A218VZH81.6e-2265.17Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr017166 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G028670.1CcUC02G028670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity