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CcUC02G027240 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGGTTAGCATGGAAAACACCCATTTCTCGAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCATCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCCTGGCAAAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAACCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGTTCGTGTCTCTTCCTCAATCCAGCCCCACAGTTGCAGCACCCACATGATTCAAATAGTCTATACATTGAATTTGATCTTGTTTGTTCCTGTGGCTTTCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCGTTTTCTTCGTTTGGGGAGGTTACTGAAGGTAATCGTGAATGTTGTGTTAAAGCATTTTGATGTATGAGTTGTAGTCTACGTGTTCGACGAAATGTCTAGTCTACTTCGGACCTCAATTCATCACGCGTACTTCTGGGTTGAAACTTTTGCTTCGTTGACATTCATAATTCCAAGGATTTTCTTTTAGAAACAAAATTTGTTTCATTAAAGTTTCCTGTTTTATGAGTTTTCTAACGAGACTTAGTGCCTGGTTGAAATTAGGAGAGCAAATGACTGTCAGATGAGTAGGATCAGGAGCATATTGTTTTGTAGCATTTTACTATCCTTCTGCAATTTTCTTGAAATGTTGAGACTGCAAAACAATGATCTATATAGAGATTGAAGTACAACGAATTTGAGAGGTGGGAAATTAGAATTTATATATGAGCTGAAAGGAATTTGATGTCCATTGCTAATCACTCTGGAACTTCAACTACAAAATAGCTTATGGGCACGGAGGTCCTTTGATATAGTTAAAGATGAATGACCATTGTGAAACTTCAGTGTTGATGTCCATTGTAAAGGAACTTTGATGTCCATTGGTGACCGCTTTGAAATTTCACCAGCAAATATCCTATGGATTTCATTTGATGTAGTTAGGATAAAATTCAATGACCACTGAAACTTCAGTGATCATCACTATACGAACTTTGATATCCAGTAGTGATCACTCTGAAACTTCATCAGTAAATTGCTTATTGAGTTGAGTTCTTATGTTAAGATTTGAATGGCTTATATGTTCTCTTGACAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTCGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCATTAATTAGTAAGAAATTATTTGACGGGGTTTAGTCTATCATCATAAATTACTCAAAGTGAAAGTCATTGCATCACTTGCAGGCGTTATTAGGGCGACCGTTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGATGGGCCAAAGGTCTTGAAGCTCTTGGTATTTCATCTACCTAGAGCATGAATATGTAATCTCGAACTGTTCAATTCCTACTTCTTAGTTTAATTTTGTACATTGACTTGGTTTTGCAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTAATAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTATGATTTATTTTGTGTCCATGATAGATGTTCCCAAATTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG TTTTGGTTAGCATGGAAAACACCCATTTCTCGAAAGTTCACAGTCAATTAATCGGCCTTTAAACGCACATTCTAAAATCACATCAATTGACGAGCTTTGTGATAGCAAAGTTTTAGTTCCCATCGTCGAACTCGATCACGAGCAATAACAAATGATGAGCAACATGAACACCTTGATACTGCCTGGCAAAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAACCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCGTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTCGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCGTTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGATGGGCCAAAGGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTAATAATGGCAGAAAAATGCAATATCAAATTTCTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGATCAAAATGCTTGTAGAACTACTTATGATTTATTTTGTGTCCATGATAGATGTTCCCAAATTATTTGGCCAGAAATCTTGCTTTCCATCTTAGTAGTATCTTTG ATGATGAGCAACATGAACACCTTGATACTGCCTGGCAAAAAAGCACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAAACCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCGCCAAACAATAAGCTCTTCGTCGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGATGCGTTTTCTTCGTTTGGGGAGGTTACTGAAGTCAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGCTTCGGGTTTGTGAACTTCACAAATGAAAATGATGCACAATGTGCAAAAGATGCAATGGATGGAAAGGCAAGTCGGCGACCGTTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGGACCTGTTGTCATTCCTCGACTTTCAAACGTCAACAACATGATGGGCCAAAGGTGTGGAAACCAATAG MMSNMNTLILPGKKALTNIQTPILSFRYFCSQTSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKASRRPLRISFALDKVRGGPVVIPRLSNVNNMMGQRCGNQ Homology
BLAST of CcUC02G027240 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 244.6 bits (623), Expect = 5.5e-61 Identity = 127/150 (84.67%), Postives = 139/150 (92.67%), Query Frame = 0
BLAST of CcUC02G027240 vs. NCBI nr
Match: XP_038902171.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Benincasa hispida]) HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60 Identity = 128/149 (85.91%), Postives = 138/149 (92.62%), Query Frame = 0
BLAST of CcUC02G027240 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 240.7 bits (613), Expect = 8.0e-60 Identity = 126/150 (84.00%), Postives = 138/150 (92.00%), Query Frame = 0
BLAST of CcUC02G027240 vs. NCBI nr
Match: KAA0034781.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]) HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59 Identity = 123/147 (83.67%), Postives = 137/147 (93.20%), Query Frame = 0
BLAST of CcUC02G027240 vs. NCBI nr
Match: XP_022944150.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]) HSP 1 Score: 238.8 bits (608), Expect = 3.0e-59 Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16 Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 5.6e-16 Identity = 38/85 (44.71%), Postives = 63/85 (74.12%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15 Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2) HSP 1 Score: 78.2 bits (191), Expect = 9.0e-14 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2) HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13 Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61 Identity = 127/150 (84.67%), Postives = 139/150 (92.67%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 8.6e-60 Identity = 123/147 (83.67%), Postives = 137/147 (93.20%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59 Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 9.5e-59 Identity = 122/148 (82.43%), Postives = 136/148 (91.89%), Query Frame = 0
BLAST of CcUC02G027240 vs. ExPASy TrEMBL
Match: A0A0A0LQB7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416100 PE=4 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57 Identity = 120/151 (79.47%), Postives = 131/151 (86.75%), Query Frame = 0
BLAST of CcUC02G027240 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 145.6 bits (366), Expect = 3.3e-35 Identity = 73/99 (73.74%), Postives = 85/99 (85.86%), Query Frame = 0
BLAST of CcUC02G027240 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 ) HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17 Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0
BLAST of CcUC02G027240 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17 Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CcUC02G027240 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 ) HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17 Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CcUC02G027240 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 ) HSP 1 Score: 85.5 bits (210), Expect = 4.0e-17 Identity = 38/85 (44.71%), Postives = 63/85 (74.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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