CcUC02G026970 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G026970
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	activating signal cointegrator 1 complex subunit 2-like
Location	CicolChr02: 14413784 .. 14414362 (+)
RNA-Seq Expression	CcUC02G026970
Synteny	CcUC02G026970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCTCCATGCCGCCGCGCAGCTTGCTCCATGCCACCGCTCAGCTTGCTCCATGCCGCCGCTTCGCCTCTAAGCGCGATCCACGCCTCGCACAAGTCTCAGACTCATGCCCACTGTCGCTTGGCACGCTCCACGCTAACACTTCACCTCTCAACTCGTTCCACATCGTCGCAACACCACTTTCGCACCCACATGCCTGCTCGCCGCCGTTAGAATTTTGCTGCATTTCTTGCTGAGGTAAGTGCTCCATAGACCAACTAAAAGTTACTTCCTTGCTTGAATTTCTCGATAGCTTCCTTAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGTAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAATTCGCCGTGTTTACATGGTATTGTATCGCATGTAAGTTCCACTACGAAGTACCAAGTTTTATTCAAATTGAACATTATTGCAAAGCTGAATGACTGACAACAAATTTTGTTTCCCCTCTAAGACCTTCCTGCAGGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGA

mRNA sequence

CTCGCTCCATGCCGCCGCGCAGCTTGCTCCATGCCACCGCTCAGCTTGCTCCATGCCGCCGCTTCGCCTCTAAGCGCGATCCACGCCTCGCACAAGTCTCAGACTCATGCCCACTGTCGCTTGGCACGCTCCACGCTAACACTTCACCTCTCAACTCGTTCCACATCGTCGCAACACCACTTTCGCACCCACATGCCTGCTCGCCGCCGAGTAGATGGTATGATTTTCCACATCGTGGAGTAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAATTCGCCGTGTTTACATGGTATTGTATCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGA

Coding sequence (CDS)

ATGCCGCCGCGCAGCTTGCTCCATGCCACCGCTCAGCTTGCTCCATGCCGCCGCTTCGCCTCTAAGCGCGATCCACGCCTCGCACAAGTCTCAGACTCATGCCCACTGTCGCTTGGCACGCTCCACGCTAACACTTCACCTCTCAACTCGTTCCACATCGTCGCAACACCACTTTCGCACCCACATGCCTGCTCGCCGCCGAGTAGATGGTATGATTTTCCACATCGTGGAGTAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAATTCGCCGTGTTTACATGGTATTGTATCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGA

Protein sequence

MPPRSLLHATAQLAPCRRFASKRDPRLAQVSDSCPLSLGTLHANTSPLNSFHIVATPLSHPHACSPPSRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG

Homology

[Close]

BLAST of CcUC02G026970 vs. NCBI nr
Match: XP_038897592.1 (activating signal cointegrator 1 complex subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGEYEL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 155 SRWYDFPHRGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 210

[Close]

BLAST of CcUC02G026970 vs. NCBI nr
Match: XP_022940705.1 (uncharacterized protein LOC111446220 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 68   SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
            SRWYDFPHRG NGIVAG+I+GE+EL RRV+MVLYRMSSNRDPGARAADSLS+KDHG
Sbjct: 1485 SRWYDFPHRGANGIVAGIIIGEFELCRRVFMVLYRMSSNRDPGARAADSLSIKDHG 1540

[Close]

BLAST of CcUC02G026970 vs. NCBI nr
Match: KAG6591418.1 (Transcription factor basic helix-loop-helix 85, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 546 SRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 601

[Close]

BLAST of CcUC02G026970 vs. NCBI nr
Match: XP_022936905.1 (activating signal cointegrator 1 complex subunit 2-like [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 156 SRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 211

[Close]

BLAST of CcUC02G026970 vs. NCBI nr
Match: XP_022976975.1 (activating signal cointegrator 1 complex subunit 2-like [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 156 SRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 211

[Close]

BLAST of CcUC02G026970 vs. ExPASy TrEMBL
Match: A0A6J1FRD2 (uncharacterized protein LOC111446220 OS=Cucurbita moschata OX=3662 GN=LOC111446220 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 68   SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
            SRWYDFPHRG NGIVAG+I+GE+EL RRV+MVLYRMSSNRDPGARAADSLS+KDHG
Sbjct: 1485 SRWYDFPHRGANGIVAGIIIGEFELCRRVFMVLYRMSSNRDPGARAADSLSIKDHG 1540

[Close]

BLAST of CcUC02G026970 vs. ExPASy TrEMBL
Match: A0A6J1IKZ3 (activating signal cointegrator 1 complex subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111477182 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-21
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 156 SRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 211

[Close]

BLAST of CcUC02G026970 vs. ExPASy TrEMBL
Match: A0A6J1FF14 (activating signal cointegrator 1 complex subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111443354 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-21
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NGIVAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 156 SRWYDFPHRGANGIVAGVIVGECELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 211

[Close]

BLAST of CcUC02G026970 vs. ExPASy TrEMBL
Match: A0A6J1CEQ5 (activating signal cointegrator 1 complex subunit 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011005 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.4e-21
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           SRWYDFPHRG NG+VAGVIVGE EL RRV+MVLYRMSSNRDPGARAADSLSLKDHG
Sbjct: 155 SRWYDFPHRGANGLVAGVIVGELELSRRVFMVLYRMSSNRDPGARAADSLSLKDHG 210

[Close]

BLAST of CcUC02G026970 vs. ExPASy TrEMBL
Match: A0A5A7VB30 (Activating signal cointegrator 1 complex subunit 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001520 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.4e-20
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDHG 124
           +RWYDFPHRG  G VAGVIVGEYEL RRV+M LYRMSSNRDPGARAADSLSLKDHG
Sbjct: 150 TRWYDFPHRGATGTVAGVIVGEYELSRRVFMALYRMSSNRDPGARAADSLSLKDHG 205

[Close]

BLAST of CcUC02G026970 vs. TAIR 10
Match: AT1G27752.1 (Ubiquitin system component Cue protein )

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-21
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 68  SRWYDFPHRGVNGIVAGVIVGEYELIRRVYMVLYRMSSNRDPGARAADSLSLKDH 123
           SRWYDFP  GV GIVAGVIVGE EL RRV+MVLYR+SSNRDPGA+AADSLS KDH
Sbjct: 160 SRWYDFPFHGVKGIVAGVIVGELELCRRVFMVLYRISSNRDPGAKAADSLSQKDH 214

The following BLAST results are available for this feature:

BLAST of CcUC02G026970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897592.1	9.2e-22	94.64	activating signal cointegrator 1 complex subunit 2 isoform X1 [Benincasa hispida...	[more]
XP_022940705.1	5.9e-21	87.50	uncharacterized protein LOC111446220 [Cucurbita moschata]	[more]
KAG6591418.1	1.0e-20	92.86	Transcription factor basic helix-loop-helix 85, partial [Cucurbita argyrosperma ...	[more]
XP_022936905.1	1.0e-20	92.86	activating signal cointegrator 1 complex subunit 2-like [Cucurbita moschata]	[more]
XP_022976975.1	1.0e-20	92.86	activating signal cointegrator 1 complex subunit 2-like [Cucurbita maxima]	[more]

BLAST of CcUC02G026970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G026970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRD2	2.9e-21	87.50	uncharacterized protein LOC111446220 OS=Cucurbita moschata OX=3662 GN=LOC1114462...	[more]
A0A6J1IKZ3	4.9e-21	92.86	activating signal cointegrator 1 complex subunit 2-like OS=Cucurbita maxima OX=3...	[more]
A0A6J1FF14	4.9e-21	92.86	activating signal cointegrator 1 complex subunit 2-like OS=Cucurbita moschata OX...	[more]
A0A6J1CEQ5	6.4e-21	91.07	activating signal cointegrator 1 complex subunit 2 isoform X1 OS=Momordica chara...	[more]
A0A5A7VB30	5.4e-20	87.50	Activating signal cointegrator 1 complex subunit 2-like isoform X1 OS=Cucumis me...	[more]

BLAST of CcUC02G026970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27752.1	6.3e-21	83.64	Ubiquitin system component Cue protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21494:SF0	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2	coord: 68..123
None	No IPR available	PANTHER	PTHR21494	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100	coord: 68..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G026970.1	CcUC02G026970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0043130	ubiquitin binding