CcUC02G026810 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G026810
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	patellin-1-like
Location	CicolChr02: 13887746 .. 13889195 (-)
RNA-Seq Expression	CcUC02G026810
Synteny	CcUC02G026810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTGCCACTCCATTCTCTCTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCTTTTCTTTCTCTGCTTCAATTTCTTTTCCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTAAATTTGGCTTGCAGCAATCAAATATAGAGTTTTTTTTCCTTTTTCTTTTTTTTTTTTTTTTTCTTTTTCTTTTCGTTTTTTTTGTTTTTAGATTTTAAAAATAAGGTTTTTTTTTTTTTTTTTTTTTCTACATTCTAAAATAAGTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTTGTTTTTTTTTATGTAAATTTTGGGTGGGGCAAAAAAAATTAAAGTTTTTTTTTCTTTTTTTTTTTTTTTTTCTTTTTCTTTTCGTTTTTTTTGTTTTTAGATTTTAAAAATAAGGTTTTTTTTTTTTTTTTTTTTTCTACATTCTAAAATAAGTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTAATTTATCATAATTCAAAGTCATATAAATAACTCTGCTTCTCTAATGATAAGGATTAGCAAAATTATACATTTGAACTTCTTTTATATATGAGTATGTGCAATTCTTTTGAAAATTTTAGGACAAATTTGAATTGGGTCATTGTTCTTTCTTTCTTTCCTATCTCCGATGAGGTTCTTTTTGTAAAATGGCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGAGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAATTAAATTTCAATCACAAATTATGGGTTGTAATGAAGAAAGTTAATGGGAGGTTTATGAAAGTTGTGTATGTGAAGTGAAGTGGTTGATTAAGTGGGAAGGAGTGTAATAAGTTAAAAGGTGTCTAGGGATTAGGAGACCTTGTCTTTGTTTTTGTGGATGTCTGTTCAGAGTGCAATATTTTTGCCACTTTGTTTGTTATAACAACTTACACCCATATATGTCTCTATGAAAATATTGCATCAATATAAGAGAAAACAAGTCATAATGTGTTTTTGTTCATATACAGCTTTGGTTCTCTCATACAAGTTTACCTAAAATCACCCTTCTA

mRNA sequence

ACACTGCCACTCCATTCTCTCTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCTTTTCTTTCTCTGCTTCAATTTCTTTTCCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGAGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAATTAAATTTCAATCACAAATTATGGGTTGTAATGAAGAAAGTTAATGGGAGGTTTATGAAAGTTGTGTATGTGAAGTGAAGTGGTTGATTAAGTGGGAAGGAGTGTAATAAGTTAAAAGGTGTCTAGGGATTAGGAGACCTTGTCTTTGTTTTTGTGGATGTCTGTTCAGAGTGCAATATTTTTGCCACTTTGTTTGTTATAACAACTTACACCCATATATGTCTCTATGAAAATATTGCATCAATATAAGAGAAAACAAGTCATAATGTGTTTTTGTTCATATACAGCTTTGGTTCTCTCATACAAGTTTACCTAAAATCACCCTTCTA

Coding sequence (CDS)

ATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGAGGCAGATCCACCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGGTGAGGCACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

Protein sequence

MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAPEETETPVEVETKEVVVEEEPKEEKKEEEEEEEEAEAVVEEESKPAEGEAPAEEEAVEEKPKEETEEKAEEEPAAEKAE

Homology

[Close]

BLAST of CcUC02G026810 vs. NCBI nr
Match: XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-37
Identity = 124/140 (88.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAPEE 60
           MATAEVV PET LPEEATEVVEVPPPKVEEEEAPPP   DPPAEEV KEEE TDPPA EE
Sbjct: 1   MATAEVVPPETVLPEEATEVVEVPPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAAEE 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEA-EAVVEEESKPAEGEAPAEEEA---VEE 120
           TETPVEVETKEVVVEEEPKEEKKEEEE+EEEA EAVVEEESKPAE EAPAEEEA   VEE
Sbjct: 61  TETPVEVETKEVVVEEEPKEEKKEEEEKEEEAGEAVVEEESKPAEAEAPAEEEAVEVVEE 120

Query: 121 KPKEETEEKAEEEPAAEKAE 137
           KP EETEEK EEEPAAEKAE
Sbjct: 121 KPVEETEEKPEEEPAAEKAE 140

[Close]

BLAST of CcUC02G026810 vs. NCBI nr
Match: XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-26
Identity = 113/149 (75.84%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPVE DPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEE---------AEAVVEEESKPAEGEA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE         AE VVEEE+K    E 
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120

Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 137
            AEE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CcUC02G026810 vs. NCBI nr
Match: XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-25
Identity = 110/155 (70.97%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPVEADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEE----------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEE          AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 137
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CcUC02G026810 vs. NCBI nr
Match: KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-25
Identity = 110/155 (70.97%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPVEADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEE----------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEE          AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 137
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CcUC02G026810 vs. NCBI nr
Match: XP_022971120.1 (fibrous sheath CABYR-binding protein-like [Cucurbita maxima])

HSP 1 Score: 58.9 bits (141), Expect = 3.9e-05
Identity = 90/163 (55.21%), Postives = 97/163 (59.51%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAPEE 60
           MATAEVVT E AL EE TE VEVPP KVEEE    P  ADPPAEEV KEE      A E 
Sbjct: 1   MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEAEAV------------------------V 120
            E PVEVETKEVV +EE +E K+E  EE++E EA                          
Sbjct: 61  AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120

Query: 121 EEESKPAEGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 137
           EEE+KP E E  AEEEA  V+E   EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKP-EAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

[Close]

BLAST of CcUC02G026810 vs. ExPASy TrEMBL
Match: A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 113/149 (75.84%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPVE DPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEE--EEEE---------AEAVVEEESKPAEGEA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE         AE VVEEE+K    E 
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 120

Query: 121 PAEEEAVEEKPKEETEEKAEEEPAAEKAE 137
            AEE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 -AEEKAVEVKPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CcUC02G026810 vs. ExPASy TrEMBL
Match: A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 110/155 (70.97%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPVEADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEE----------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEE          AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 137
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CcUC02G026810 vs. ExPASy TrEMBL
Match: A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 110/155 (70.97%), Postives = 115/155 (74.19%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPVEADPPAEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEE----------AEAVVEEESKPAEGEAP 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEE          AE  V EE+K +E E P
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 AEE-------EAVEEKPKEETEEKAEEEPAAEKAE 137
            EE       E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CcUC02G026810 vs. ExPASy TrEMBL
Match: A0A6J1I4V1 (fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111469887 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 90/163 (55.21%), Postives = 97/163 (59.51%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVEADPPAEEVEKEEETTDPPAPEE 60
           MATAEVVT E AL EE TE VEVPP KVEEE    P  ADPPAEEV KEE      A E 
Sbjct: 1   MATAEVVTQEPALQEEVTE-VEVPPLKVEEE---APAAADPPAEEVAKEE------AAEV 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEAEAV------------------------V 120
            E PVEVETKEVV +EE +E K+E  EE++E EA                          
Sbjct: 61  AEPPVEVETKEVVAKEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAEEEEEE 120

Query: 121 EEESKPAEGEAPAEEEA--VEEKPKEETEEK-AEEEPAAEKAE 137
           EEE+KP E E  AEEEA  V+E   EE EEK AEEEPAAEKAE
Sbjct: 121 EEEAKP-EAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

The following BLAST results are available for this feature:

BLAST of CcUC02G026810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900947.1	2.9e-37	88.57	cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin...	[more]
XP_004140479.1	6.8e-26	75.84	cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe...	[more]
XP_008455963.1	4.4e-25	70.97	PREDICTED: patellin-1-like [Cucumis melo]	[more]
KAA0053292.1	4.4e-25	70.97	patellin-1-like [Cucumis melo var. makuwa]	[more]
XP_022971120.1	3.9e-05	55.21	fibrous sheath CABYR-binding protein-like [Cucurbita maxima]	[more]

BLAST of CcUC02G026810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G026810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAS3	3.3e-26	75.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1	[more]
A0A5A7UC23	2.1e-25	70.97	Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010...	[more]
A0A1S3C239	2.1e-25	70.97	patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1	[more]
A0A6J1I4V1	1.9e-05	55.21	fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CcUC02G026810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G026810.1	CcUC02G026810.1	mRNA