CcUC02G025880 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G025880
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCicolChr02: 11037152 .. 11037627 (+)
RNA-Seq ExpressionCcUC02G025880
SyntenyCcUC02G025880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCTGTTAGTCCTGATATTAACTCTCTCCAATCCCATGCCTTACATCGATGCTAAGCAAGTGACTATCGATAATGGTAACTCTGTCCCTATCTCTCATGTTGGGTCTGCCTCTTTGTCATCTAATTTATCTATTCCTCTGAAATTTGTTTCATGTCTTATATACTCCAAACATCTCTCATAAATTGATTAGCATTTCAAAATTATGTCGAGATAATATGGCTTCTGTTGAATTCTACTTTCTTTGTTGTGAAGGACCTATTCTCCAAGAAGGCACTCCTTCAGGGTCTTCTTGATGGTGGATTGTACAAGCTCCCGTTGCGGCCCTCCTCAACATATTCGAACCGTTCAAGCTTGCCATCATTTGCTCTCCTCATCAAAATCACTTCTAATTTATGGCATTTTCGTTTAGGTCATCCTGCGTTTCCTATTGTTAGACAAATTTTGAACATTTGTAACATTGATTTTAGGTCCTAA

mRNA sequence

ATCCTGTTAGTCCTGATATTAACTCTCTCCAATCCCATGCCTTACATCGATGCTAAGCAAGTGACTATCGATAATGGACCTATTCTCCAAGAAGGCACTCCTTCAGGGTCTTCTTGATGGTGGATTGTACAAGCTCCCGTTGCGGCCCTCCTCAACATATTCGAACCGTTCAAGCTTGCCATCATTTGCTCTCCTCATCAAAATCACTTCTAATTTATGGCATTTTCGTTTAGGTCATCCTGCGTTTCCTATTGTTAGACAAATTTTGAACATTTGTAACATTGATTTTAGGTCCTAA

Coding sequence (CDS)

ATGGACCTATTCTCCAAGAAGGCACTCCTTCAGGGTCTTCTTGATGGTGGATTGTACAAGCTCCCGTTGCGGCCCTCCTCAACATATTCGAACCGTTCAAGCTTGCCATCATTTGCTCTCCTCATCAAAATCACTTCTAATTTATGGCATTTTCGTTTAGGTCATCCTGCGTTTCCTATTGTTAGACAAATTTTGAACATTTGTAACATTGATTTTAGGTCCTAA

Protein sequence

MDLFSKKALLQGLLDGGLYKLPLRPSSTYSNRSSLPSFALLIKITSNLWHFRLGHPAFPIVRQILNICNIDFRS
Homology
[Close]
BLAST of CcUC02G025880 vs. NCBI nr
Match: RVW65725.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. NCBI nr
Match: CAN61322.1 (hypothetical protein VITISV_012106 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. NCBI nr
Match: RVW95765.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. NCBI nr
Match: RVX22902.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 294 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 353

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 354 SFDIVSKVMNTCNV 367

[Close]
BLAST of CcUC02G025880 vs. NCBI nr
Match: RVW36350.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 411 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 470

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 471 SFDIVSKVMNTCNV 484

[Close]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match: A0A438G0Q9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1916 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match: A0A438CVN7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_547 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match: A5BFR8 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012106 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

[Close]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match: A0A438DLM0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2184 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 411 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 470

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 471 SFDIVSKVMNTCNV 484

[Close]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match: A0A438IG92 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1726 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 2   DLFSKKALLQGLLDGGLYKLP----LRPSSTYSNRSSLPS-FALLIKITSNLWHFRLGHP 61
           DL +K  L QG L+ GLYK P    L+P S+ +N S+  S F+  ++  + LWH RLGH 
Sbjct: 439 DLHTKMVLAQGKLENGLYKFPVFSNLKPYSSINNASAFHSQFSSTVENKAELWHNRLGHA 498

Query: 62  AFPIVRQILNICNI 71
           +F IV +++N CN+
Sbjct: 499 SFDIVSKVMNTCNV 512

The following BLAST results are available for this feature:
BLAST of CcUC02G025880 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW65725.11.1e-0643.24Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
CAN61322.11.1e-0643.24hypothetical protein VITISV_012106 [Vitis vinifera][more]
RVW95765.11.1e-0643.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVX22902.11.1e-0643.24Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
RVW36350.11.1e-0643.24Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
BLAST of CcUC02G025880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438G0Q95.4e-0743.24Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438CVN75.4e-0743.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5BFR85.4e-0743.24Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438DLM05.4e-0743.24Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438IG925.4e-0743.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
BLAST of CcUC02G025880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G025880.1CcUC02G025880.1mRNA