CcUC02G024490 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G024490
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionBRCT domain-containing protein
LocationCicolChr02: 7929370 .. 7929654 (-)
RNA-Seq ExpressionCcUC02G024490
SyntenyCcUC02G024490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTTGCCGATAACTCCTGCTGCAGTTCTTCTGTAAGTACAAGTTGGGGAAAGGGATTTTTTTTAAATATAGTAGGATATTCTTCAATATTAAAGATACACGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCAAATATTATCTTTTTGGTTTCGTTTGTAGAAAATGCTAAAATTTCAAAAGCGGAGAACATTGGAAACGTTGATTGTTTTAGCAAAGAAGGGAATTTGGTCTAG

mRNA sequence

ATGAAGAACGTTGCCGATAACTCCTGCTGCAGTTCTTCTGTAAGTACAAGTTGGGGAAAGGGATTTTTTTTAAATATAGTAGGATATTCTTCAATATTAAAGATACACGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCAAATATTATCTTTTTGGTTTCGTTTGTAGAAAATGCTAAAATTTCAAAAGCGGAGAACATTGGAAACGTTGATTGTTTTAGCAAAGAAGGGAATTTGGTCTAG

Coding sequence (CDS)

ATGAAGAACGTTGCCGATAACTCCTGCTGCAGTTCTTCTGTAAGTACAAGTTGGGGAAAGGGATTTTTTTTAAATATAGTAGGATATTCTTCAATATTAAAGATACACGAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCAAATATTATCTTTTTGGTTTCGTTTGTAGAAAATGCTAAAATTTCAAAAGCGGAGAACATTGGAAACGTTGATTGTTTTAGCAAAGAAGGGAATTTGGTCTAG

Protein sequence

MKNVADNSCCSSSVSTSWGKGFFLNIVGYSSILKIHEGIWSSGMILALGARGPEFDSRNAPNIIFLVSFVENAKISKAENIGNVDCFSKEGNLV
Homology
BLAST of CcUC02G024490 vs. NCBI nr
Match: GEW71266.1 (monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium])

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 34  KIHEGIWSSGMILALGARGPEFDSRNAP 62
           K HEGIWSSGMILALGARGPEFDSRNAP
Sbjct: 470 KQHEGIWSSGMILALGARGPEFDSRNAP 497

BLAST of CcUC02G024490 vs. NCBI nr
Match: KAF9665928.1 (hypothetical protein SADUNF_Sadunf16G0175700 [Salix dunnii])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 32 ILKIHE-GIWSSGMILALGARGPEFDSRNAP 62
          ++K+HE GIWS+GMILALGARGPEFDSRNAP
Sbjct: 1  MIKVHESGIWSNGMILALGARGPEFDSRNAP 31

BLAST of CcUC02G024490 vs. NCBI nr
Match: VDC97964.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-05
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 38 GIWSSGMILALGARGPEFDSRNAPNIIFLVSFVE 72
          GIWSSGMILALGARGPEFDSRNAP   FLV+ ++
Sbjct: 16 GIWSSGMILALGARGPEFDSRNAPINFFLVNVLK 49

BLAST of CcUC02G024490 vs. NCBI nr
Match: GEW39561.1 (26S proteasome non-ATPase regulatory subunit 4 homolog [Tanacetum cinerariifolium])

HSP 1 Score: 57.4 bits (137), Expect = 7.8e-05
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 31  SILKIHEGIWSSGMILALGARGPEFDSRNAPNIIFLVSFVENAKISKAENIGNVDCFS 89
           S+ K   G+WSSG+ILALGARGPEFDSRNAP+  FL+S    + +S   N+   D  S
Sbjct: 234 SLKKQQSGVWSSGVILALGARGPEFDSRNAPS--FLIS--SPSTLSSEPNMAKPDLSS 287

BLAST of CcUC02G024490 vs. NCBI nr
Match: CAF1699910.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 29 YSSILKIHEGIWSSGMILALGARGPEFDSRNAPNIIF 66
          + +++   +GIWSSGMILALGARGPEFDSRNAP  IF
Sbjct: 7  WRTLINNPQGIWSSGMILALGARGPEFDSRNAPIDIF 43

BLAST of CcUC02G024490 vs. ExPASy TrEMBL
Match: A0A3P6BFV3 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 38 GIWSSGMILALGARGPEFDSRNAPNIIFLVSFVE 72
          GIWSSGMILALGARGPEFDSRNAP   FLV+ ++
Sbjct: 16 GIWSSGMILALGARGPEFDSRNAPINFFLVNVLK 49

BLAST of CcUC02G024490 vs. ExPASy TrEMBL
Match: A0A2C9VIU6 (Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_07G057900 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.2e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 38 GIWSSGMILALGARGPEFDSRNAPNIIF 66
          GIWSSGMILALGARGPEFDSRNAP ++F
Sbjct: 3  GIWSSGMILALGARGPEFDSRNAPTVLF 30

BLAST of CcUC02G024490 vs. ExPASy TrEMBL
Match: A0A2U1NF93 (Tetratricopeptide-like helical domain, DYW domain protein OS=Artemisia annua OX=35608 GN=CTI12_AA266450 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.9e-05
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 38   GIWSSGMILALGARGPEFDSRNAPNIIFLVSFVENAKISKA 79
            G+WSSGMILA GARGPEFDSRNAP  +   +F+  A IS A
Sbjct: 1020 GVWSSGMILASGARGPEFDSRNAPFFLKFENFIAAANISWA 1060

BLAST of CcUC02G024490 vs. ExPASy TrEMBL
Match: A0A0D3BIR0 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 38 GIWSSGMILALGARGPEFDSRNAPNIIFLVSFVE 72
          GIWSSGMIL LGARGPEFDSRNAP   FLV+ ++
Sbjct: 16 GIWSSGMILVLGARGPEFDSRNAPINFFLVNVLK 49

BLAST of CcUC02G024490 vs. ExPASy TrEMBL
Match: A0A061DQC8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 31 SILKIHEGIWSSGMILALGARGPEFDSRNAPNIIF 66
          S  +  +G+WSSGMILALGARGPEFDSRNAP   F
Sbjct: 15 SAFENRKGVWSSGMILALGARGPEFDSRNAPYFWF 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GEW71266.19.2e-0696.43monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium][more]
KAF9665928.14.6e-0583.87hypothetical protein SADUNF_Sadunf16G0175700 [Salix dunnii][more]
VDC97964.14.6e-0579.41unnamed protein product [Brassica oleracea][more]
GEW39561.17.8e-0553.4526S proteasome non-ATPase regulatory subunit 4 homolog [Tanacetum cinerariifoliu... [more]
CAF1699910.11.0e-0470.27unnamed protein product [Brassica napus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A3P6BFV32.2e-0579.41Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1[more]
A0A2C9VIU62.2e-0589.29Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_07G0579... [more]
A0A2U1NF934.9e-0565.85Tetratricopeptide-like helical domain, DYW domain protein OS=Artemisia annua OX=... [more]
A0A0D3BIR06.4e-0576.47Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A061DQC81.4e-0471.43Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G024490.1CcUC02G024490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane