CcUC02G024070 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G024070
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 7397546 .. 7400863 (+)
RNA-Seq Expression	CcUC02G024070
Synteny	CcUC02G024070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGAGGTAGTTTGGATTTCTACTGATTTTCTACCCTAAGAGGGGCCCAGCCAGCCATACCGTTCAGTCGTCACTTTTCTCTCTTTTACTCGGTCAAACCCCTCGAAGAGTTTTGTCGCTACTTAACCGTCGCCGTTACCGCCGCCGCCGACTTCAGGTAATTCAGCCCCTTAATTTCACGTTCGCTTTACGCTTTGATAATTTCCTCCGATTCTTCAATCATCGGTTGGCCTTTTTTTCACCCTTAGGTATCAAGATATCGGGTCCACAAATCCTGTTCATGTGAATGAAGTTAAAGCGCTGATATCAATAATATGCTCCGCTTACTGTTTTCGCTTTATCAGAATTTTAATATAGGGTTTAGGTTCATTTGATTTGTCCAATTACATTCTATAACAAATGATGTGTATGACTCGAATTCATGTATTAATCTTCTTGTGTTTTTGACGTTGTAGTCTGGAATATAATATCATGTTATTTTGTAATCCTATGGTTTCTTAGTTTCTTCATTGATATGTACTACAGGGTAAGTTATTCGAGGAGGGTCTTATTTTAATATAATATGTTTTACTATTTTAATATATTTTCTTAGGCTTTCACTACTGGGCTGCTCTTTATATCCCTGTTCTGTATTAATCTTCTGTTGGTCTTACCTGAGTTTCGTTTCTAATATCCCATTTAGGTGTAGAAACTTCGAAATTTAGGTTTTGTTTGGTAACCATTTAGTTTTTAGGTTTTGGTTTTTGAAAATTGAGCCTAGAGATATGCTTTCTAATTTTAGATTTATTGTTTTGTTATCAAATTTTTACCGATGTTTTAAAAAACCAAGCCAAGGTTTGAAAACCCAAAAGAAAATAGTTTTTATAAACTTGTTTTTATTTTTTTGAATTTGGCTAAGAATTCAACTCATTTACTTAAGAAAAGTGTAAAAGATGGTAAGAAATTGAGAGGAAATAGGCTTAATTTTCAAAAACCAAAAACCAAAAATCAAATGGTTACCAAACATAGCCTTAGTTTTTAATTTAGCTTCTATGGCCTTACTCTTGTTGGAAAGACCAGACAGAAAGAAGATTTTTTTAACATATTTGGTTTAGAATACCTTCCAAACCGGATTGATTTTCACTTCTTGTCAAAAGTCTGCATCCATTGTTATTTAATTGTACAATGCAATATGGATTGTAATGGCTGTGTGTTTTCCTTCCCTTATTAGTTTTTCCCTTTTTTGGGTTAGATTTGTCATCATGGATGGGAAGAAGTAGATTATCAAAGGAGTATGACTTGGGAGTTGAAATGTTTATTAAATTTGGAGAACATCAAGCAAATGGGTCAACAGGCATTAGATGTCCTTGTTTGAAATGTGGAAATTGTAAACGGCTTAGTAGTCAAGAGATTAGAGATCACTTGTACATTTATGGCATTGATCAGGGGTAGAAGACATGGTTTTGGCATAGTGAAGAACTTTCAAATGATATAATGGACAAATAAATAGGGGACAACATGGATGAATTAGTGGACAACAAGAACGGTGTCCGTGAAGTGGATAAATCATGGATGGAAAAAAGTAGATCATCTAAGGATTATGATTTGGGCATTGAAATGTTTATTAAATTCAGAGAACGTCATGCCAATGGATCAACTTCCATTAGATGTCCATGTAATAGATGCAAAAATCTTAAATGTCATAGTAGGGGAGACGTTAGAGCCCACTTGTACTTCCATGGTATTGATCAAAGTTATACGATGTGGTTTTGGCATGGTGAAAAACTTACAATAGAACAAAGACTCAAAGAAGCAGGTGGCATCATGGACAAATCGTTGGATGAAGAGAACAAAGATTATGATTTGAAGGATATAATGGAAAAGGATAATGCAGCTCATGCCACAAATCCTCTCATGAGTGATTACAATCTAAATATTTCTAACACATCTCATATCAAGTTCGATTACAACAGGAGGAAAACACGTGGTCCAACTACAATGCCTGAAATTACTCGATGTAGTAGCCAGGGAGATAGAAAGGTAGTAAAGTATAACGACTATGGACAACCAATTGGAGTGAATGCAGCAAAACTGAGGAGTTACATTGGCTCTTGTGTCCATTTCCATGTCCCAATTACTTATGCTACTTGGAAACATGTACCTAACATGATTAAAGAAAAGATTTTAAAGTTGATTCAGGTATAATCCATTTAACTTCTATTTTTGTTATTTTCTTAAATTCTCAAATTGAAGGTAATGGTATTATCTTGTATATCTGCAGGCTGGTCTTGTCATTGATGAAAAGGCAAAAAAGTCCATCTTACAAAATGCTGGTAATTCATTCCGTCAATTTAAAAGCTGGTTGAAGACTCATTATATTATTCCTTTCAAAAATCAGCCAGATCGATTGGAAAATCCTCCAGATACTTATTCACACATTGAGAGACATCATTGGCACCAATTTGTTCAAATCACGATTGAGCGAAGAGTTTCAGGTTTGTAGTCTTATGCTTTTAACTGATAGGCTTCCTAATAATATTCTTTCACTGACATTATTGTGTTGAAGAATTTGAGGACTTTAAAGCACAAAGACGTGCGCAGAACAAATACAATTACCGATTGTCAAGAAAAGGTTATGCTAACTTTCTTGAAGAAATGGTAAGATTGTCTTTTATGCATATAACTACTTAGTGATGGTTCTTGTTCTTGTTTGTGTGCCTGTATATGTGAAAGAGACAAATTATTTAACTAATTTTGAACTATTTGAGTGTAGAAAAAGAAACATACTATTGAAAAAGCTGCTCAAATGTAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGTAGTTTCTCTTTCTCGCATGATAAGTTAATGATATCTTTGTTTAGTATAACAATATCCCTTACAATAATTTGCAATTTCTCATGCATTATACTTAAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATAAATCCTAGTCGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCTGACACGGGCTTTGACACAACAAAATCTGGTCTTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGTAATGAGCAATATTCAGAAGACGAGGTATTGGGACCTGTTAACAATTGGAACTTGCAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAA

mRNA sequence

AACGAGGTAGTTTGGATTTCTACTGATTTTCTACCCTAAGAGGGGCCCAGCCAGCCATACCGTTCAGTCGTCACTTTTCTCTCTTTTACTCGGTCAAACCCCTCGAAGAGTTTTGTCGCTACTTAACCGTCGCCGTTACCGCCGCCGCCGACTTCAGAAAAAGAAACATACTATTGAAAAAGCTGCTCAAATTATAACAATATCCCTTACAATAATTTGCAATTTCTCATGCATTATACTTAAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATAAATCCTAGTCGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCTGACACGGGCTTTGACACAACAAAATCTGGTCTTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGTAATGAGCAATATTCAGAAGACGAGGTATTGGGACCTGTTAACAATTGGAACTTGCAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAA

Coding sequence (CDS)

ATGGCCATAAATCCTAGTCGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCTGACACGGGCTTTGACACAACAAAATCTGGTCTTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGTAATGAGCAATATTCAGAAGACGAGGTATTGGGACCTGTTAACAATTGGAACTTGCAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAA

Protein sequence

MAINPSRDHVLTRTSEKPECSDQPKGEGGLSKPDTGFDTTKSGLELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQYSEDEVLGPVNNWNLQKVITFFPNSSSFQ

Homology

[Close]

BLAST of CcUC02G024070 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 4   NPSRDHVLT-RTSEKPECSDQPKGEGGLSKPDTGFDTTKSGLELERIQKNEIDEMVKALY 63
           NPS D+V T R S + E SD+ KGEGGLSKP  GF TTK   + ER Q+ E +E +K LY
Sbjct: 462 NPSCDYVSTRRASGRSESSDRVKGEGGLSKPSAGFHTTKLAPKRERTQEKEDEEEIKMLY 521

Query: 64  RRVEELEEKIRQQSRFPSNSDCGSCNEQYSEDEVLGPVNNWNLQK 108
           RR++ELEE+IR + + P  S+ GSC+EQ+S++E+LGP NNWN +K
Sbjct: 522 RRIKELEEQIRLK-QIPPISEHGSCDEQHSDEEILGPANNWNFKK 565

[Close]

BLAST of CcUC02G024070 vs. ExPASy TrEMBL
Match: A0A6J1D4R5 (uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017298 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 4   NPSRDHVLT-RTSEKPECSDQPKGEGGLSKPDTGFDTTKSGLELERIQKNEIDEMVKALY 63
           NPS D+V T R S + E SD+ KGEGGLSKP  GF TTK   + ER Q+ E +E +K LY
Sbjct: 462 NPSCDYVSTRRASGRSESSDRVKGEGGLSKPSAGFHTTKLAPKRERTQEKEDEEEIKMLY 521

Query: 64  RRVEELEEKIRQQSRFPSNSDCGSCNEQYSEDEVLGPVNNWNLQK 108
           RR++ELEE+IR + + P  S+ GSC+EQ+S++E+LGP NNWN +K
Sbjct: 522 RRIKELEEQIRLK-QIPPISEHGSCDEQHSDEEILGPANNWNFKK 565

The following BLAST results are available for this feature:

BLAST of CcUC02G024070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148697.1	3.7e-20	55.24	uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha...	[more]

BLAST of CcUC02G024070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G024070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4R5	1.8e-20	55.24	uncharacterized protein LOC111017298 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CcUC02G024070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G024070.1	CcUC02G024070.1	mRNA