CcUC02G023740 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G023740
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 6680077 .. 6681403 (-)
RNA-Seq ExpressionCcUC02G023740
SyntenyCcUC02G023740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAAACCAACTCGGTGGGCACAGCAACCAAAATTGAGCCTTCTAAAACTCCTACGAGCAACCTGAAAGAACTTCAAAACGCTAATGACTCCAATTCCTTGATCAACGCATCCAAATCGGAGCACGACGATCCATTTTTTGTACCAGCTTTTTTCGCCATCTCTGCCAATTCTTTAGCTTTGTTTCTCATTTCTTCTGTTTCTTCTCCCTCCATAACTCTCCTTATTGCCTTCTCCACTGCTTCCCTTCTCATGAAATCCCCCACAATTCTCCCCCATTTCTGAACCCCAACTGCAACTCCAATTTTCAACACCTCCGTCACTAGTTTCTCGTTGTAAAATTGCTCCGCCGTCACTGGCCATGCCACCATCGGAACTCCGGCAGCCACTCCTTCCAGCGTGGAATTCCACCCACAGTGTGTCACAAATCCACCCACCGCCGGATGATCCAATATCAAAACCTGCGGCGCCCATCCTTTTATAATCATCCCTTTTCCTTCCATCCGCTGTTGGAATCCTTCTGGTAACCAATCCTGATCCTCTCCTTTTTCTTCTTCCTCTTTCACTTTCCTCACAACCCATATGAAATCTTTCCCTGAAGCTTCAAGCCTACTTGCAATCTCCTTCAACTGATCGGAATTGAATTTCGCCATACTTCCAAAACACACATACACAACCGAATTGGGTTTCTTGGAGTCGAGCCATTTCAAGCACTCGTGTTCGTCAATGGCAGATTGGTTTCCTCTCTGAGCTTTTTCTTCAGTTTTTTATTACATAATGAAAGTGGGCCAATATGCCATGCCTTTCTTCCCAATACATTTCTATAGCAATCTGCATACTCTGCCTCCAGCTCGTAAAAACTGTTCATAGTAACCCCAAGACGCCGACCCTGATTCATGAGCCCACTTTATAAATTCGGTTGAATCATTTTTGACATACTCCCCCTTGAACTCGGGAAGTTTCATCTTCGTGAAAGTAATCTCCCCGGGGAGACATGGAATGAGAAAATAGCCTCTTCTAATAGGATTTGGAGCAATTTCAAAGCAGAGTTAAATTTAGGGAACATAGCAGGAGTGACAACGGAGTCGAGATTTTCACAGCCGTCTGGTAGGCCAACTTCAGCAGAAGGGAATTTGAGGATAAGAAGGTGAATTAGAGAAGTAGAGAGGGATTTTGAATTTTGGATTGAATTAGAGATGGAGATGGGATTGAGAGGGGTTGTGACGATGTGATCTTGAAGCCGCGAGAAGACAGCAATTTGGCCATGTCGACGATGGGAATCATGTGGCCACGAGCCATGAAAGGGAACAAGAACATGTGGAGCTGA

mRNA sequence

TTCCAAACCAACTCGGTGGGCACAGCAACCAAAATTGAGCCTTCTAAAACTCCTACGAGCAACCTGAAAGAACTTCAAAACGCTAATGACTCCAATTCCTTGATCAACGCATCCAAATCGGAGCACGACGATCCATTTTTTTTTCTCGTTGTAAAATTGCTCCGCCGTCACTGGCCATGCCACCATCGGAACTCCGGCAGCCACTCCTTCCAGCGTGGAATTCCACCCACAGTGTGTCACAAATCCACCCACCGCCGGATGATCCAATATCAAAACCTGCGGCGCCCATCCTTTTATAATCATCCCTTTTCCTTCCATCCGCTGTTGGAATCCTTCTGGATTTGGAGCAATTTCAAAGCAGAGTTAAATTTAGGGAACATAGCAGGAGTGACAACGGAGTCGAGATTTTCACAGCCGTCTGGTAGGCCAACTTCAGCAGAAGGGAATTTGAGGATAAGAAGAGATGGAGATGGGATTGAGAGGGGTTGTGACGATGTGATCTTGAAGCCGCGAGAAGACAGCAATTTGGCCATGTCGACGATGGGAATCATGTGGCCACGAGCCATGAAAGGGAACAAGAACATGTGGAGCTGA

Coding sequence (CDS)

TTCCAAACCAACTCGGTGGGCACAGCAACCAAAATTGAGCCTTCTAAAACTCCTACGAGCAACCTGAAAGAACTTCAAAACGCTAATGACTCCAATTCCTTGATCAACGCATCCAAATCGGAGCACGACGATCCATTTTTTTTTCTCGTTGTAAAATTGCTCCGCCGTCACTGGCCATGCCACCATCGGAACTCCGGCAGCCACTCCTTCCAGCGTGGAATTCCACCCACAGTGTGTCACAAATCCACCCACCGCCGGATGATCCAATATCAAAACCTGCGGCGCCCATCCTTTTATAATCATCCCTTTTCCTTCCATCCGCTGTTGGAATCCTTCTGGATTTGGAGCAATTTCAAAGCAGAGTTAAATTTAGGGAACATAGCAGGAGTGACAACGGAGTCGAGATTTTCACAGCCGTCTGGTAGGCCAACTTCAGCAGAAGGGAATTTGAGGATAAGAAGAGATGGAGATGGGATTGAGAGGGGTTGTGACGATGTGATCTTGAAGCCGCGAGAAGACAGCAATTTGGCCATGTCGACGATGGGAATCATGTGGCCACGAGCCATGAAAGGGAACAAGAACATGTGGAGCTGA

Protein sequence

FQTNSVGTATKIEPSKTPTSNLKELQNANDSNSLINASKSEHDDPFFFLVVKLLRRHWPCHHRNSGSHSFQRGIPPTVCHKSTHRRMIQYQNLRRPSFYNHPFSFHPLLESFWIWSNFKAELNLGNIAGVTTESRFSQPSGRPTSAEGNLRIRRDGDGIERGCDDVILKPREDSNLAMSTMGIMWPRAMKGNKNMWS
Homology
[Close]
BLAST of CcUC02G023740 vs. NCBI nr
Match: PON53921.1 (hypothetical protein PanWU01x14_199180, partial [Parasponia andersonii])

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-04
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 53  LLRRHWPCHHRNSGSHSFQRGIPPTVCHKSTHRRMIQYQNLRRPSFYNHPFSFHPLLESF 112
           L+  HWP  + +S +++ Q  +PPT+ HK+T RR+ Q  +L RP  ++HP S H LLE  
Sbjct: 30  LICTHWPSCYGHSHTNTLQARVPPTMTHKTTCRRVPQNLHLGRPFPHHHPHSCHSLLEPI 89

Query: 113 W 114
           W
Sbjct: 90  W 90

[Close]
BLAST of CcUC02G023740 vs. ExPASy TrEMBL
Match: A0A2P5BYS5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_199180 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 53  LLRRHWPCHHRNSGSHSFQRGIPPTVCHKSTHRRMIQYQNLRRPSFYNHPFSFHPLLESF 112
           L+  HWP  + +S +++ Q  +PPT+ HK+T RR+ Q  +L RP  ++HP S H LLE  
Sbjct: 30  LICTHWPSCYGHSHTNTLQARVPPTMTHKTTCRRVPQNLHLGRPFPHHHPHSCHSLLEPI 89

Query: 113 W 114
           W
Sbjct: 90  W 90

The following BLAST results are available for this feature:
BLAST of CcUC02G023740 vs. NCBI nr
Match NameE-valueIdentityDescription
PON53921.13.6e-0442.62hypothetical protein PanWU01x14_199180, partial [Parasponia andersonii][more]
BLAST of CcUC02G023740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G023740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BYS51.8e-0442.62Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of CcUC02G023740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G023740.1CcUC02G023740.1mRNA