CcUC02G023200 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G023200
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30S ribosomal protein S2, chloroplastic
LocationCicolChr02: 5963398 .. 5966773 (-)
RNA-Seq ExpressionCcUC02G023200
SyntenyCcUC02G023200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTTTGCTGATCTTATCCTCTCTCATTTCTTTTTGCTAAGCTGTTTTGTTTCTGATATATCTGAGTTATGGTTTGAGTAAATTAATGGTGAATTTTGAGGTGGAAGAAGCTTAAAAATTCATGAACTAGGATCTTACCCATGGCTTCCCTTGCACCCCATCTTTATACTTAATTCAATACCAAGAAAGGATATACAATGAAGTAAGATAATTGGAATTAATTAAGATTACTTCAACTTATTATTTTCCCCACTCATATAAAACAGTGTTTGTCCATGGTTTATTGCTTCTAAAATGGTTTAATTCAATGTGGATGGATTTTCAATTACTTAAAGGGTAGAGAGATTTCAATTTTCGACCTCGAAGAATGAAATATACAATCAATTTATTGAATTTTGGTAAAATATTAGAAGTACAGTTGTCCTAAATCGAAAAATTAAAAGAATGATGGGCTCCAAGTACAATAAAATGAGTATATGTCTTTGGTTTCAAATTTTCTCAGTTATAAATACTTTAAGGGTAATTGCGTTGGATAGAACTTTTAGGGATAATTAAGCGTATGCTAATTTGTTTAAAAAATTGTAAATATAACAAAATCTATCAATGATAGACTCTATCATTGATGGACTCCCATCAACGATATGGTCTATCACTGATGGACGTCAAAAATATAATTTAAAATTTGTTATACTGCAAATATTTTGGATTTAATTGCTATTTTTGCAACTACCTCATACTTTAAGTGTAGGGCCATAATACTACTGAATTATGGTAGAAAACGGGATAATTTTTTGACTGAATCGAAAGCTTTGACAACTTTGGGTTTGCCAATAATAATAATAATAATTAGTCAAGTATGATTGGTTCTATTCAATTTAAGTTACATGGTTGATATTTGTCCATATGCTTTTAATAAATCTTAAATTTAATTTATATACTTTTGGTAAAAAAAATTTCTAATAATTTGTAAATCTTAAATTTACTTATTTGAATTTATTTTTAGGGTAATTGTTTTAAATGACAAAACTGCCAGAAAAATTTTCAAATATAACAAAATGTCACTGACTAATATCATCTATGATTGTCTATCAACTATAGTATAGACAATGACATTCAAAAAAAATTTTCGAGGGGGAAATGAGAGATATTTTGTTCCACCACAAAGAATTATTTGATTTTTGCATTTCAACGAATTTACATGATACATCAGAACAAGCATTTCTAGGATTTAATGATTCATAAAAGTGGAGTCATACTGTTAACTAGCCACATTGATTTGGTAATAAGATAATAACGAATAGAAAAAAATTAATGGCTTGGATCGTGTATCAACAGTCAATCCCTGGTCGAGGTAGAGGATAAGGTTCCATGGGAACAATTATTTATTTCTATTTCAGCTCGTCTCTTTTTTTTAAGAAAAAAGCGAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAATAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATTGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCNGAGGTTACCCGATATTGTAATAATCGTTGATCAACAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTGGAATTAAACAAAATTCAAATCTCAAGGGTAAAATTGTGAAATTTTGAAATGTAGGGACTAAATTGAAATAAAACTCAAAACTTAAGGAGTAAGGGGTTGTGTGGGAGTTGAGTTGGTTATTATAATATATATGTTGGTTGTAAACTATTTTAGCATGTGTTACAAATTAGGGGAGAGAATGGTCACCAAATAGTAAACACTATAGACAATGAAATTTCGCAAATAGTTTTACTGTAGACAAATGTGAGTTATACTAATTGGGAACTTCAACTATCATAATAAAAGACCCAAATATTGACCGGGCTATAATAGCCCACTCCACCCAAGGCAAGTTGTGGGCCAAAATGTTCCCTAAATGTGTATCATTTGAAACCTATGAACCAAATTGAAACTAAACCTGAAAGTTAGGGACTAAAAAGGTAATTTATCCTAATTTTTTATTGAAAAATATTTAATTAATAAAATATTGTTTAAAAATACTTGTAGCCTCTAAACTTTCACGAAAGTAACAATTTAGTCTCTGAACTTTGGTTTGTAATAATTTAGTTCATATACTTTCAATTTTGTAATAATTTAATCCCCACAATATAGTATGTAACAATTTAGTCCTTGTACTTTTAAATTTGTACCAACTTAGTCTCCAATGTAAAAAATTCATCAAAATTAGATATTAATTTTTATTATATTGTGATGTAGACTTTGTATTTTATAAAAACATTGAGTTTCTAATTAGTTTATCGGTTTATTTATACAAGGAATCACAAAACACTAATTTCTACAATAGAGGCTTATTACAAAATTTAAAGTATAAGAACTAAATTATTACATAATAAAGTTTAGAGATTAAATTATTTCAAAATCAAAAGTATATGGACTAAATCGTTACAAATAAAAGTTCAAAAACTAAATTATTACTTCCCTAAAAATTTAGGGACTAAAAGGTAATTTTAACCTTAAAATATTTAGTTCAACGAAGAATCCAACTAATAACTCACAACAACATTCCTTTTAGATTTTTGAGTAGTTGAGCAAAGAGAGAATCATATGTAGAAAGCCCATGTGGAGTAGTGTAGTACATAAGTAAGCCACATGTAGCCAAAAAAGAGCAAGCAACACTTTTGTCTTGTGAAGGTTGGGCTCCACTTCAAAGAAATGAGCCCAACCCAAAGAAAGTCACTGTTTTTTACAACTCTATAGTCCAAACATAAACTTATAAACTTATTTATTATTTGTAGGATTTTAAGCATGGATTAAATATTTATTAA

mRNA sequence

ATGGATATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATTGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCNGAGGATTTTAAGCATGGATTAAATATTTATTAA

Coding sequence (CDS)

ATGGATATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATCAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCAGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTGGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGGGACTCAACCGTCTTCCGAAAAGGGATGCCGCTATGTTGAAGAGACAATTATCTCACTTGCAAACATATCTGGGCGGTATTAAATATATGACGGGGTTACCCGATATTGTAATAATTGTTGATCAGCAAGAAGAATATCGGGCTCTTCAAGAATGTATCACGTTAGGAATTCCAACTATTTGTTTAATTGATACAAATTGTGACCCNGAGGATTTTAAGCATGGATTAAATATTTATTAA

Protein sequence

MDMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLIDTNCDPEDFKHGLNIY
Homology
[Close]
BLAST of CcUC02G023200 vs. NCBI nr
Match: AHM88761.1 (ribosomal protein S2, partial [Lagenaria siceraria])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. NCBI nr
Match: YP_009752993.1 (ribosomal protein S2 [Gerrardanthus macrorhizus] >QIT06065.1 ribosomal protein S2 [Gerrardanthus macrorhizus])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. NCBI nr
Match: YP_009456050.1 (ribosomal protein S2 [Momordica charantia] >YP_009738190.1 ribosomal protein S2 [Siraitia siamensis] >YP_009752655.1 ribosomal protein S2 [Ampelosycios humblotii] >YP_009752824.1 ribosomal protein S2 [Baijiania yunnanensis] >YP_009752909.1 ribosomal protein S2 [Momordica sessilifolia] >AUJ21817.1 ribosomal protein S2 [Momordica charantia] >QIB71583.1 ribosomal protein S2 [Siraitia siamensis] >QIT05136.1 ribosomal protein S2 [Ampelosycios humblotii] >QIT05896.1 ribosomal protein S2 [Baijiania yunnanensis] >QIT05981.1 ribosomal protein S2 [Momordica sessilifolia])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. NCBI nr
Match: YP_009317375.1 (ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Citrullus lanatus] >YP_009348020.1 ribosomal protein S2 [Citrullus mucosospermus] >YP_009420783.1 ribosomal protein S2 [Citrullus colocynthis] >YP_009431546.1 ribosomal protein S2 [Citrullus amarus] >YP_009431631.1 ribosomal protein S2 [Citrullus rehmii] >YP_009447439.1 ribosomal protein S2 [Cucurbita maxima] >YP_009456135.1 ribosomal protein S2 [Lagenaria siceraria] >YP_009505069.1 ribosomal protein S2 [Cucurbita pepo] >YP_010131083.1 ribosomal protein S2 [Benincasa hispida] >ALO22031.1 ribosomal protein S2 [Cucurbita ecuadorensis] >ALO22147.1 ribosomal protein S2 [Cucurbita ficifolia] >ALO22201.1 ribosomal protein S2 [Cucurbita foetidissima] >ALO22335.1 ribosomal protein S2 [Cucurbita maxima subsp. andreana] >ALO22560.1 ribosomal protein S2 [Cucurbita pepo subsp. fraterna] >ALO22610.1 ribosomal protein S2 [Cucurbita pepo subsp. ovifera] >ALO22698.1 ribosomal protein S2 [Cucurbita pepo var. ozarkana] >ALO22796.1 ribosomal protein S2 [Cucurbita pepo subsp. pepo] >ALO22851.1 ribosomal protein S2 [Cucurbita pepo var. texana] >ALO22893.1 ribosomal protein S2 [Cucurbita pedatifolia] >APW82450.1 ribosomal protein S2 [Citrullus lanatus subsp. vulgaris] >QNM38520.1 ribosomal protein S2 [Lagenaria siceraria var. microcarpa] >QZL38670.1 ribosomal protein S2 [Citrullus ecirrhosus])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. NCBI nr
Match: AHM91235.1 (ribosomal protein S2 [Lagenaria siceraria])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 6.5e-105
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAA+RGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAATRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATR RCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAM KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMFKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match: Q49L09 (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps2 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 6.7e-102
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQK G LN
Sbjct: 72  LIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKAGRLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+ECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match: Q0ZJ31 (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 8.7e-102
Identity = 178/187 (95.19%), Postives = 182/187 (97.33%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAA +ARCHYVNKKWLGGM TNWSTTETRLHKFRDLRTEQKTG LN
Sbjct: 72  LIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRDLRTEQKTGRLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY AL+ECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match: B2LMI3 (30S ribosomal protein S2, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps2 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.3e-101
Identity = 177/187 (94.65%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNK ADSVA AA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY  LQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTPLQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match: Q1KXW9 (30S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.3e-101
Identity = 177/187 (94.65%), Postives = 181/187 (96.79%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNK ADSVA AA RARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGL+
Sbjct: 72  LIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLS 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQ EEY ALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match: A0A1P8LE54 (Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match: A0A2Z2CQF0 (30S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match: X2F5D2 (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match: X2F6M8 (Ribosomal protein S2 (Fragment) OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match: A0A6H0ER73 (30S ribosomal protein S2, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rps2 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN
Sbjct: 72  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI
Sbjct: 132 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 191

Query: 182 DTNCDPE 189
           DTNCDP+
Sbjct: 192 DTNCDPD 198

[Close]
BLAST of CcUC02G023200 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 354.4 bits (908), Expect = 6.0e-98
Identity = 170/187 (90.91%), Postives = 178/187 (95.19%), Query Frame = 0 

Query: 2   DMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 61
           +MM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF
Sbjct: 12  EMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQF 71

Query: 62  LIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLN 121
           LIVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWSTTE RLHKFRDLRTEQKT G N
Sbjct: 72  LIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRDLRTEQKTEGFN 131

Query: 122 RLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYRALQECITLGIPTICLI 181
           RLPKRDAA+LKRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY AL+ECITLGIPTI LI
Sbjct: 132 RLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALRECITLGIPTISLI 191

Query: 182 DTNCDPE 189
           DTNC+P+
Sbjct: 192 DTNCNPD 198

The following BLAST results are available for this feature:
BLAST of CcUC02G023200 vs. NCBI nr
Match NameE-valueIdentityDescription
AHM88761.12.6e-10398.93ribosomal protein S2, partial [Lagenaria siceraria][more]
YP_009752993.12.6e-10398.93ribosomal protein S2 [Gerrardanthus macrorhizus] >QIT06065.1 ribosomal protein S... [more]
YP_009456050.12.6e-10398.93ribosomal protein S2 [Momordica charantia] >YP_009738190.1 ribosomal protein S2 ... [more]
YP_009317375.12.6e-10398.93ribosomal protein S2 [Coccinia grandis] >YP_009325978.1 ribosomal protein S2 [Ci... [more]
AHM91235.12.6e-10398.93ribosomal protein S2 [Lagenaria siceraria][more]
BLAST of CcUC02G023200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP46.5e-10597.3330S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ... [more]
Q49L096.7e-10295.1930S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
Q0ZJ318.7e-10295.1930S ribosomal protein S2, chloroplastic OS=Vitis vinifera OX=29760 GN=rps2 PE=3 ... [more]
B2LMI33.3e-10194.6530S ribosomal protein S2, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps2 P... [more]
Q1KXW93.3e-10194.6530S ribosomal protein S2, chloroplastic OS=Helianthus annuus OX=4232 GN=rps2 PE=... [more]
BLAST of CcUC02G023200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1P8LE541.3e-10398.93Ribosomal protein S2 OS=Citrullus mucosospermus OX=519315 GN=rps2 PE=3 SV=1[more]
A0A2Z2CQF01.3e-10398.9330S ribosomal protein S2, chloroplastic OS=Coccinia grandis OX=387127 GN=rps2 PE... [more]
X2F5D21.3e-10398.9330S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps2 P... [more]
X2F6M81.3e-10398.93Ribosomal protein S2 (Fragment) OS=Lagenaria siceraria OX=3668 GN=rps2 PE=3 SV=1[more]
A0A6H0ER731.3e-10398.9330S ribosomal protein S2, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rps2 PE=3... [more]
BLAST of CcUC02G023200 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00160.16.0e-9890.91ribosomal protein S2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 169..180
score: 50.51
coord: 31..40
score: 61.69
coord: 152..169
score: 39.83
coord: 81..98
score: 46.92
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 3..189
e-value: 4.7E-68
score: 228.6
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 3..188
e-value: 1.45017E-77
score: 228.62
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 2..190
e-value: 5.0E-68
score: 226.7
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 2..188
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 1..194
score: 29.963181
NoneNo IPR availableGENE3D1.10.287.610Helix hairpin bincoord: 96..146
e-value: 1.1E-25
score: 91.6
NoneNo IPR availableGENE3D3.40.50.10490coord: 1..193
e-value: 3.4E-62
score: 211.1
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 152..176
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 2..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G023200.1CcUC02G023200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome