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CcUC02G020540 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGCTGGGGAAAGAATTGTTAGAAAAAAACCATTTATTAAAAAGACCAATTATTAAAAGAAAAAAACAACAAAGCGATTAAGACAGACAGAAAAATCGTAGATGAAGAATAGGGGCGGGAGGGACTTCGCCGGAGAGGGAGAGAGATATCGAACGATGAGTTTCATAGCAACTCCTCCGTCGCCGACAATTCTTAGTCCGCCGTTCAATTTACCGAGCTCTGGCGGGAAAGCATGCTGCCTACGACTAGGCAGCGCAGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGTCAAGAAAAATTTACAACAATTGGACCGAGTGCATGATGCCAAAATTAGGCGTTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTGATGCCTCTGCACTTGAATTTTATGTTCATCTGTATCTTTGATTAGTTATCGGACTTATTCGATATTGCATGATCGGTATTGATTTTTAGAGGTGTCCACAGCAATGGCGAGATAGAGATTTTTGCTTATTGTAATTCCTTCAATATTCCTTGCTGATATTTTGTACGATTTATGTGTTAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTCTTCATTCGTACTTGAAAGCAGAAGCTGAATTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGAGCTGCAAAATCAGGATTCAAATAATGGAATAGAAGGCGTATTCATATACAGATGAATTTGTAGCGAGAAAGATGGAGTTCAGCTGTGTTTCCTCTGAAGAAACCTGGAAAGACTTGGAAACTTTCCCTGGATAAGAGCTATAACTGTATACTGGCTCAAGTCAGCCATGCTTAGCAGAGAATATTTGTGATAAACTTTTGAGTTATGTTTTGATTGAATAAATCGACACTAGTTGGATCTCATGAATGTTGGATGAATTGTATCGATTTACTTTGGTTTCTCAAGCTGCTGGGATCCAGAAACTTCCCTCCCCTGCTTAGCGGTCTCGCTAGTTTATGCAGAGAAGAGGTGATCATCTTGCAACATACTTCAGCTACTCTGTCGTGAGCAGGAGACAGAAATATAAGGGGAAAAGCTAGACTATAATATACGGTGAATGGTACATGATTTCTTTTTCCTCCCAAGAATACCGAATTATCTGTAGAATACATAAGGAACGAACCAAGTTCGGGAATGCTGCATAATCTCTGTAAGAACGTATATAGTAAAGCTAAAAATTATGTGGGCCTACGCCCAAACTGCTAATTTTGTGCAGCCTGCTTCTGATGTGTGTTTTACCCATCATGAGATTTAACATGCCAGTATACTTATGTTCAAGTTTCTAGTTTATTCTATAGGCCTAACCTTTTGATTCCAATTCCTTAGTTACAAAAAGATTTCAAAATTGTTTCCCTTCAAATGTCTGCCCAAACTGCCAGTTACCAGGTGCAACGCTGTAGGAAGTAAGTGCTCTTCCACTGCTGGAGGTAACTTCAAAAGAGAGAGGTTGTCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTTCTTGCCAGTGGTATCCATCCTGTTCTTGATCCTTTTACTTTGACTGCCACTAATTCACCATCCATTCCAACATTTGTAATCAGCACTTGAAAGAAGCGAGAATTCCCACTAACTGTGAATCTCATTGCACCACTTCTGTCACACCTCACCCTACACAAATATTAAACAAGCTTTTTCCCTTAGCTTAGGATCACAACGAACAAATTGTCTGAATCTTTATGCATTTAGATCGATTATACCTCCTATATTGAACTGGCACAATATCTGCTTTTTTCTCTGCTATTTCAGCAAACGCTGCCTCTGACATCTCAAAGTGTTCCTTGGGAAAATTACACCAACCACCATAATCGGAAGAGAAGCCGTAATTGGGAGGACAGAAGTCGGTGGCCGTTAGAATGACAGTCGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGGTACTCCCTCTATTAAACAACATGCTACTCAGTCCAGCGCTATATTTTCCATAGCTTATCTTATGCAGATCTCCATAACCACAAGCACCTTCTGCAACATTGGTAAAACAAAAAAGCACTTCAAATTCTAATTTCCCTCCCTTTTGGTTACAGTATTACAGACATGATAGCTGAATGTTGGGGAGTGATGCAAAAATGCCGGTAATCTTCTTTTAATTTTATTTTAATATCCGTGAGTGTTCGGACTAGCTTACGCACACCTCGACTAATCTCATGTAACACCTCACCGAAACCTATAACATTTGGGTGTTAAGAAAACTCAAGGATATTAAATCATAGGTAGGTGGCCACCATAGATTGAACCCATAATTTCTTAGCCCTTTTATCAAGTTCATGCTCTCTTATTTACCACTAAATCAACCCATAATAGTTAAAAAAGCATGCCCTTAATCATTCACAATCAATTCAATGTTCGGTTCTACATTCTTATTTCCAATTATCATCAAAATTGGTTCTGAATTATGAAAAACATGTTTACGAGTGATTTTGAACATGACAAAAATGATTTTAATAATTTCAAGACCACTATCAAACATCCCAGGTCACGATTTTCAGTTTCCAACTTTTGAAGGTGGGGGAGAGATTCCTTAAACCACAGATGTGAGCAGTGCTGCAACTCTTGAACACTCAAATAGCAACTATAAAAATGAGCTTCTTCAAACCCAGAAAAGCACCATGTTTAACATGAATGTAATTTCATGAACAAAGGAAAAGAGTACCTGTAACAATTGAGCCATCTGTTTCTTTGGAGTATGTTGCAGTAGCAGATTTCCACTCTTCTTCATCCTTAACCGCAAATATGTTGGTGGGTGTTTGCAGAAGAACCAAATAGAAGACTATTATAGCTACAAAGGCAGCCATTTCAGAAGAACATAAAGCCTTGAAGAAGCCTGTGCAGTGTGTACTAAAAAATGAGGTATATCTCCTTTTGAATTGCCCCCCTTTAAGAAAAGCCCCTCTCTGCCTTCTTTTTCAGTATTCCCCTAATTTCTCGCTGAAATGAAAGCAAGCTTCTTTGATTGCCGGAACACTATTCTGAAGCAAATAGAATAAACTTTGACAAATCTCCAATTTTGTAGCCTTTCGTTCACATTGGTGGCGCGTTTAACGAGGCAAAGGACTGTTGTTATCTTCCGATAAATGGGGCCTCAAAGAAGCAAATTTGGAGCCTTCATTTTTGCCATTATGGATGTGGGAAGTAGGAAGGTTTGAGGCTTATGTCAATGGCGGCAGAGACAGAGTGGAAAGCCATCCATAGAAGCAGGTATGTGCTTCTTTGTATTTCAACTTTTTAAGATCCCTTGAAATAAAAGAATAAAAAGAAGCTAAGAAGAACCCAGAACTCAGAAGTGGCCTATTTTGGTTTTGATTGTTGGACCCGAATGAGTTTAAAAGAGGGTGACTTTTGGTTTTATGGCTCATCTTTTCATGATAAAAAAAGGTCGTGGATGTTCCTTAAAAATAAATAAATATATAAGAAAAACAAAATTAGTGGATGGGTCCCAGAGTTGGAAGGGGATTGCCGGGTAATGAAGAAGCCGTTCTCTTGGCGGGAAACGGTGCTGGAGGCTTTTTCTTTTTCTAAAAAAAAAATTATAAATAGTAATTAATAATAATTACTATAATTATTATTAAAAATACTATTTTGGCTCTATACTTTGGACTTTGGTAACGTTTACTTCCCAGTAAACGTAATCGATCAATAGTAATATGAAAAGTAGGGTCGTTTAAATACGTTCTCAAAAATCCATTAATGATATACGGTGAATTATGAGTAATAAAGAAAATCCATTACAATTGTAGCAATTCTGACTACGGAGTAGTAAACATAACTTTTGTTCAATTTTAGTTATACTTTTAATATATCTTGAATTTAGTTCTATTGCTAATTTATTGATAATTTTTTTAAAATACTTCATGTTATCTATTAACATTTTTACTACAAAGTTGAAAACATATTTACCTATTGTATTTTCTTGCATGAAAATTATCATTCATGTTCTCACATTTTTACTATAAATTTCGTATGTATTAAAAGTAGAAGGACTAATAATTGTATCAATGTAAAGTTTAAATCTTGAACTATTGTAGGTATATGAATTTGCATCTTCCATTACATTATGTTCAAATAAGCATCATGTGATACTTATAGTTATATCAATTAAACTACTAAGCTTATCCAATTTAGACCTTTAGTTAGAATTTTTTTAAAATCTTTAATGCGTCATTTTCAATTGTCCATTTTGTAAAATTAATATTTGAAGAAATCTACACGCATGTGAGAATTAATGCATGAATGATTTTCAAATATACCTGTAATGATGAGTCTAAATTAATCTACTTATGAAAATTTAGGCTCCATTTGGTTTAGGTTTGTTTTAAATTAAGCTTTATTTCTCTCAATTTCTTACCATGATCTTGACTTTCTTAGGTACAAGAGTTGAATTCTTAACCAAATTCTAAAAATAAAAACTATTTTTTTTAGTTTTCAAAACTTGGTTTGGTTTTTGAAAACATTGGTAGAAAGTAGATAATATAGCAAGAAATTTATAGGTGGAAGAGAGGTTCATAACTAAAATTTGGTTACCAAATCAAGCATTGGGAGTTTATATAAATTATAAGTTTTACACTAAATCTAAAGGAGTGTAAAATAATACATTTAAGAAAGTTTAGGATTAAATTGATATAATCATTAGTTCAATTTTAATTGATACAATCTTTAAAGTTTAGAGGTATAAATTGATGGTAAATTTTTTTTTTTTTTTGTTACTGTTGTTTACTTCGACATTCAGGTAATTTAGGTAGCCAAAATGAAAATATAAGCTCATGATAAATGTATATGAATAAAAGTATCGATCAACTTAATTACAATTCAATAGAAAAAATATCATGAGATATCGATGAGAGTGGAGAACAAATCTATTCATGCTTTAGTAATTTTGGCACGTTTTTAGGATTGTTCTTTGATTTGAAAAGATGGTTTTTCATATAGGATTTTCTCGGTCATTCATGAGGATGCTAGAGTTCTTGGGTTGTTGCCAAAAAAAAAAAAATAATAATAGTAAAAATAAAATAAAATATGTTATATAATTTCAAAAGTCGTCCCATTTTTAATCCTAGCAATGATTGTATTAAAAAAGAAAAAAGAAGCCACACTTGCTATAACAGAGAAGAGGATAATCTATAAAATCAAATTAAGAGGAACCATAAAAATAAAATCATTGGTCCAAATTAAAAATTAGCTCAAATCATTAGGATCTAATCTGATCATTCATTATTTTTTTCCTTTTCCTTTTTCTTTTTAATCTTCTATCCTATCTTTCTTTCTTTCTTTCTTTTTGACTATTTAGGAAGAAATAGGCAGGAAAAAACTGGCACTCGCAGCTACGGCTCCCGGTATGTATTTATTTTTAAAATTGCATACAATATGAAGGTATTTATTTAAAGGATATCATAAACTTTCATTAAACCGAATCATGGGCATCATTGTCAATAACATGCCCAAGCCATTATTTTAGATAGCCCACCCAGCTAACGTATGAGTCATCCCATTAAAAGTCGAGGAATGAAACTAAAATCCAGTATATAAGTTCTTATCATCCATTCTCTAATTTCTAACCAAAATTTGGGAATCAAATTCAACCCAACAATTTGAGTAACCCTATTTCTCCAGCCTTTTGAAGCTACCGTTAAAACCTCACCCTCCAAATTCAAAAGACAACGACTGTTGATACGTTTAGCTTGATAGCAACCACTACCCCATGAAGAACCGAATGCCCAACAACCTACCGTGAGGCTTGCCATCCTCATCTCAAACAAATGCCATAACTTTTTTGCCCTCTTGCTCCATCGATATGAAATTATGTAAAACAAGTAACTCTGAAAAGTTTTAATTCACATTTTAAAAAATACCCTATTT AAGCTGGGGAAAGAATTGTTAGAAAAAAACCATTTATTAAAAAGACCAATTATTAAAAGAAAAAAACAACAAAGCGATTAAGACAGACAGAAAAATCGTAGATGAAGAATAGGGGCGGGAGGGACTTCGCCGGAGAGGGAGAGAGATATCGAACGATGAGTTTCATAGCAACTCCTCCGTCGCCGACAATTCTTAGTCCGCCGTTCAATTTACCGAGCTCTGGCGGGAAAGCATGCTGCCTACGACTAGGCAGCGCAGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGTCAAGAAAAATTTACAACAATTGGACCGAGTGCATGATGCCAAAATTAGGCGTTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTCTTCATTCGTACTTGAAAGCAGAAGCTGAATTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGAGCTGCAAAATCAGGATTCAAATAATGGAATAGAAGGCGTATTCATATACAGATGAATTTGTAGCGAGAAAGATGGAGTTCAGCTGTGTTTCCTCTGAAGAAACCTGGAAAGACTTGGAAACTTTCCCTGGATAAGAGCTATAACTGTATACTGGCTCAAGTCAGCCATGCTTAGCAGAGAATATTTGTGATAAACTTTTGAGTTATGTTTTGATTGAATAAATCGACACTAGTTGGATCTCATGAATGTTGGATGAATTGTATCGATTTACTTTGGTTTCTCAAGCTGCTGGGATCCAGAAACTTCCCTCCCCTGCTTAGCGGTCTCGCTAGTTTATGCAGAGAAGAGGTGATCATCTTGCAACATACTTCAGCTACTCTGTCGTGAGCAGGAGACAGAAATATAAGGGGAAAAGCTAGACTATAATATACGGTGAATGGTACATGATTTCTTTTTCCTCCCAAGAATACCGAATTATCTGTAGAATACATAAGGAACGAACCAAGTTCGGGAATGCTGCATAATCTCTGTAAGAACGTATATAGTAAAGCTAAAAATTATGTGGGCCTACGCCCAAACTGCTAATTTTGTGCAGCCTGCTTCTGATGTGTGTTTTACCCATCATGAGATTTAACATGCCAGTATACTTATGTTCAAGTTTCTAGTTTATTCTATAGGCCTAACCTTTTGATTCCAATTCCTTAGTTACAAAAAGATTTCAAAATTGTTTCCCTTCAAATGTCTGCCCAAACTGCCAGTTACCAGGTGCAACGCTGTAGGAAGTAAGTGCTCTTCCACTGCTGGAGGTAACTTCAAAAGAGAGAGGTTGTCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTTCTTGCCAGTGCAAACGCTGCCTCTGACATCTCAAAGTGTTCCTTGGGAAAATTACACCAACCACCATAATCGGAAGAGAAGCCGTAATTGGGAGGACAGAAGTCGGTGGCCGTTAGAATGACAGTCGGGCTTCCTTGCAAGCACCACAAGATGTGGTCAACACATCTAAGCTCATAGCAAGCTCCACAGTATTACAGACATGATAGCTGAATGTTGGGGAGTGATGCAAAAATGCCGAAGAACCAAATAGAAGACTATTATAGCTACAAAGGCAGCCATTTCAGAAGAACATAAAGCCTTGAAGAAGCCTGTGCAGTGTGTACTAAAAAATGAGCCTTTCGTTCACATTGGTGGCGCGTTTAACGAGGCAAAGGACTGTTGTTATCTTCCGATAAATGGGGCCTCAAAGAAGCAAATTTGGAGCCTTCATTTTTGCCATTATGGATGTGGGAAGTAGGAAGGTTTGAGGCTTATGTCAATGGCGGCAGAGACAGAGTGGAAAGCCATCCATAGAAGCAGGAAGAAATAGGCAGGAAAAAACTGGCACTCGCAGCTACGGCTCCCGGTATGTATTTATTTTTAAAATTGCATACAATATGAAGGTATTTATTTAAAGGATATCATAAACTTTCATTAAACCGAATCATGGGCATCATTGTCAATAACATGCCCAAGCCATTATTTTAGATAGCCCACCCAGCTAACGTATGAGTCATCCCATTAAAAGTCGAGGAATGAAACTAAAATCCAGTATATAAGTTCTTATCATCCATTCTCTAATTTCTAACCAAAATTTGGGAATCAAATTCAACCCAACAATTTGAGTAACCCTATTTCTCCAGCCTTTTGAAGCTACCGTTAAAACCTCACCCTCCAAATTCAAAAGACAACGACTGTTGATACGTTTAGCTTGATAGCAACCACTACCCCATGAAGAACCGAATGCCCAACAACCTACCGTGAGGCTTGCCATCCTCATCTCAAACAAATGCCATAACTTTTTTGCCCTCTTGCTCCATCGATATGAAATTATGTAAAACAAGTAACTCTGAAAAGTTTTAATTCACATTTTAAAAAATACCCTATTT ATGAAGAATAGGGGCGGGAGGGACTTCGCCGGAGAGGGAGAGAGATATCGAACGATGAGTTTCATAGCAACTCCTCCGTCGCCGACAATTCTTAGTCCGCCGTTCAATTTACCGAGCTCTGGCGGGAAAGCATGCTGCCTACGACTAGGCAGCGCAGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGTCAAGAAAAATTTACAACAATTGGACCGAGTGCATGATGCCAAAATTAGGCGTTTATTAAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTTTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTCTTCATTCGTACTTGAAAGCAGAAGCTGAATTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA MKNRGGRDFAGEGERYRTMSFIATPPSPTILSPPFNLPSSGGKACCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRVKKNLQQLDRVHDAKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEILHSYLKAEAELAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAISMH Homology
BLAST of CcUC02G020540 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 430.6 bits (1106), Expect = 9.6e-117 Identity = 221/249 (88.76%), Postives = 233/249 (93.57%), Query Frame = 0
BLAST of CcUC02G020540 vs. NCBI nr
Match: XP_008451190.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis melo] >KAA0059596.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 421.4 bits (1082), Expect = 5.8e-114 Identity = 218/249 (87.55%), Postives = 232/249 (93.17%), Query Frame = 0
BLAST of CcUC02G020540 vs. NCBI nr
Match: XP_031744771.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 hypothetical protein Csa_020464 [Cucumis sativus]) HSP 1 Score: 420.6 bits (1080), Expect = 9.9e-114 Identity = 217/248 (87.50%), Postives = 231/248 (93.15%), Query Frame = 0
BLAST of CcUC02G020540 vs. NCBI nr
Match: TYK08129.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 419.9 bits (1078), Expect = 1.7e-113 Identity = 217/249 (87.15%), Postives = 231/249 (92.77%), Query Frame = 0
BLAST of CcUC02G020540 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 408.3 bits (1048), Expect = 5.1e-110 Identity = 209/249 (83.94%), Postives = 228/249 (91.57%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.8e-18 Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 5.3e-17 Identity = 71/186 (38.17%), Postives = 98/186 (52.69%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 1.7e-15 Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.5e-08 Identity = 34/119 (28.57%), Postives = 64/119 (53.78%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07 Identity = 33/113 (29.20%), Postives = 58/113 (51.33%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 2.8e-114 Identity = 218/249 (87.55%), Postives = 232/249 (93.17%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 2.8e-114 Identity = 218/249 (87.55%), Postives = 232/249 (93.17%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1) HSP 1 Score: 420.6 bits (1080), Expect = 4.8e-114 Identity = 217/248 (87.50%), Postives = 231/248 (93.15%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1) HSP 1 Score: 419.9 bits (1078), Expect = 8.2e-114 Identity = 217/249 (87.15%), Postives = 231/249 (92.77%), Query Frame = 0
BLAST of CcUC02G020540 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1) HSP 1 Score: 407.9 bits (1047), Expect = 3.2e-110 Identity = 210/249 (84.34%), Postives = 228/249 (91.57%), Query Frame = 0
BLAST of CcUC02G020540 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain ) HSP 1 Score: 228.0 bits (580), Expect = 8.8e-60 Identity = 125/224 (55.80%), Postives = 156/224 (69.64%), Query Frame = 0
BLAST of CcUC02G020540 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 94.0 bits (232), Expect = 2.0e-19 Identity = 63/193 (32.64%), Postives = 105/193 (54.40%), Query Frame = 0
BLAST of CcUC02G020540 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.7 bits (221), Expect = 3.7e-18 Identity = 71/186 (38.17%), Postives = 98/186 (52.69%), Query Frame = 0
BLAST of CcUC02G020540 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16 Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 0
BLAST of CcUC02G020540 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 3.2e-09 Identity = 34/119 (28.57%), Postives = 64/119 (53.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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