![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CcUC02G020310 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGCGATTCTTGTTAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCATCATTTGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCTAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCGCTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGTGAGCGTAGAATCTAGTTAGGGGAAACTCATGTACAGCATACTCTTAAAGATAATTGTGAAAGCGTTTCCTACCTTTGTCGTGTATGACATTTGAAGTTTGATGTGTCTGACTGGTCTTAGAGGCCAAAGTTTTGTCACTGTAAATACATGTTTATGAAGTTCTATGCTTTTGGCTTGTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTACATGGAATTGGCTGAGTATGCACGAAGTTCTTCAAATTCTGTTTGTTTGGTATTGGGATTGGAGTGTGTACAATTTTCTAGGATTACTGTTTTAAGTGATTTGTTGGGATTGCTCAAATCTTGGTGCTAACTTATAAGTCTTTTGATGTCTAATACTGTTTTGTCTATGGAGCAGGATATTGCTAGAGTATTATGATCTTATATCAAAAAGTTCACATTAGCCTTCCTGTAGTTGTTCTTCCTCATTACGCTTTGCTTCACTTGAGCTGTGAAGAGTCATTTTCATATTCATATTAAAAAACTCCCCATGGCCTTTGTATTCTGTTACTGAACGGAAGGAATGGTTTTCCTACTTGCTTGCTAAAGGACTATAGCCAAAACGAAGACACAGTTTATAAATCAAATTATTCGACGTTTCTCGCAGTTATCAGTTCCTTAGCCCTACTAAAATGAAAGTGAAAGCCTCCTCCACTATATGCTTTGATGCTGAAACTGCCTTCTCTCCCTCTTTGCATTGTGAAAAAGATTGTTTAGATTTGGAAAACCGAACAGTAGAGCAGTAGAGCTGTTCCATCGGAATTGAGCAGCTCCATCCATGAGCTTTGACTATCTTCCATACTTCTCTCCATTTTTGGCCACCACTGGAAATTCACCATGATTCTGAAGATCATATGCTTTTATACCAAAAGGATAGAAACCAGATTGGAAATAAAGAGAGTATACAGACTAATGTGTTGAAAGAAATTACATAGGCTAACAATAACCTTTTGAGAACTTCTCCCATACCCTTTTCCTTACATATACTTCCTTTGTAACTGCCTGCTATTAAGGAGTCTTTCTTCCTTTCTTCTTCCATGTAAAGTGATGTAATTCAAGAGCTAACATGATCCAATAAATCTCTCTTAGGGGAGGAGTTGGAATAGTTAAAAAAAGGACCCTTTCAATTTGACTTAGCATTCTTGTTTTGTGGGTTCTTTTGTTAAATCTTTTGTGCTTGTTGATTGTCAGGTACAGCTTCAGATTTTGGCACTCCTGCAACTTGGACAATCTGTGTAGTAATCCAACTTGA ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGCGATTCTTGTTAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCATCATTTGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCTAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCGCTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGAATGGTTTTCCTACTTGCTTGCTAAAGGACTATAGCCAAAACGAAGACACAGTTTATAAATCAAATTATTCGACGTACAGCTTCAGATTTTGGCACTCCTGCAACTTGGACAATCTGTGTAGTAATCCAACTTGA ATGGGTCTCTCCAGTCTCCCAGCTCCATCTGAAGGAGTTCTGAATGCGATTCTTGTTAACGCTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCATCATTTGTCCCATCAACAGATCCCTTTGAAAGTTCCTCAGAGTTGGGAGATCCCAATTTTGGCTCCTCTTGGAGTTACCTCGAGATGTTTCGAAACCGATATCCTAGGATCCGATTTGATAAATTACAGGGCTCAGAATGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCTGAGATAAATCGCTTATCTTGTGGTCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTAGATTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATGTCCGAAGAAGAGAAATCGTGCTTTTGGAATGGTTTTCCTACTTGCTTGCTAAAGGACTATAGCCAAAACGAAGACACAGTTTATAAATCAAATTATTCGACGTACAGCTTCAGATTTTGGCACTCCTGCAACTTGGACAATCTGTGTAGTAATCCAACTTGA MGLSSLPAPSEGVLNAILVNAALSISMFKCIVRLILHMVGIRLSWSSSFVPSTDPFESSSELGDPNFGSSWSYLEMFRNRYPRIRFDKLQGSECREHDCSVCLTQFEPESEINRLSCGHLFHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFWNGFPTCLLKDYSQNEDTVYKSNYSTYSFRFWHSCNLDNLCSNPT Homology
BLAST of CcUC02G020310 vs. NCBI nr
Match: XP_038887530.1 (probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida]) HSP 1 Score: 295.4 bits (755), Expect = 3.6e-76 Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. NCBI nr
Match: XP_038887531.1 (probable E3 ubiquitin-protein ligase XERICO isoform X2 [Benincasa hispida] >XP_038887532.1 probable E3 ubiquitin-protein ligase XERICO isoform X2 [Benincasa hispida] >XP_038887533.1 probable E3 ubiquitin-protein ligase XERICO isoform X2 [Benincasa hispida]) HSP 1 Score: 295.4 bits (755), Expect = 3.6e-76 Identity = 141/154 (91.56%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo]) HSP 1 Score: 295.0 bits (754), Expect = 4.7e-76 Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo]) HSP 1 Score: 295.0 bits (754), Expect = 4.7e-76 Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. NCBI nr
Match: TYK19302.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa]) HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75 Identity = 140/160 (87.50%), Postives = 145/160 (90.62%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38 Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12 Identity = 51/148 (34.46%), Postives = 76/148 (51.35%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.1e-11 Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy Swiss-Prot
Match: Q8LDB8 (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08 Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76 Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 2.3e-76 Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy TrEMBL
Match: A0A5D3D707 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00210 PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 6.6e-76 Identity = 140/160 (87.50%), Postives = 145/160 (90.62%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy TrEMBL
Match: A0A0A0K534 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1) HSP 1 Score: 293.5 bits (750), Expect = 6.6e-76 Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0
BLAST of CcUC02G020310 vs. ExPASy TrEMBL
Match: A0A6J1HVX6 (probable E3 ubiquitin-protein ligase XERICO OS=Cucurbita maxima OX=3661 GN=LOC111468336 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75 Identity = 139/154 (90.26%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of CcUC02G020310 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein ) HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39 Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of CcUC02G020310 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein ) HSP 1 Score: 159.5 bits (402), Expect = 2.9e-39 Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of CcUC02G020310 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein ) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14 Identity = 46/145 (31.72%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of CcUC02G020310 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 ) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-13 Identity = 51/148 (34.46%), Postives = 76/148 (51.35%), Query Frame = 0
BLAST of CcUC02G020310 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-13 Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|