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CcUC02G019670 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CGAATTTATAATTTAATTTTAAAAAAGAAAAATAAAAAATCCCCCGGTTTCTCTAGCAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTCATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGTAATTTCCTCACAAGCCTTCCATTTCAACAAAATGTGTTCAATGTAAATTAATTGTGGAAACTGTGTGAGTTGAGTTAACATGCGTAGAAAAGTATGCCGAGTGTTCTCACAGGTGTTTTCTTTTTTCTATAAAGGATTCCAGTTGAAATGAGCTTCTGCGTCGAGTCCATGCTTCCATTTCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGGTACTTTCAGTCTCTTCTTCGTCTTCTAGTAGTTTGTCGAGTGAATTTTACTTTTTCCAATGTTCTTGTTATTGTTGGCACTCTGAAGGTTTCTGATTTCTGTTGGCCAAAAAGTTGGATAGCTGTGTTGTCAAATACGCAGAATAGCTTTATTTGTTACTTGGATTGCCTTTGATAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGGTTATATATATATATATTGACAAGAGGACAACTATTTATTGATATTTGAAAAGTTACAAGAAACCAAACTCCTATTACAAACCTAACTAGGAGGATAGTTATAAGAGAAGAACAAAGAGGCTAGGTTCTAAACGTCATTCCATCACGATTTGTGCTGTTTGAAAACAATAATGGATAACAGAAAGAAGCCCGAGGCCGAGTGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGTACGTTGGGCTTACATTATCACTTTCTGATGAGGGCTTCCATGGCCGCTTTGCTGCCCTAGCTTTCGCAGTCAAAGCGAGGGGTTTCACCCTACATTAAAATAAAAAAATGGATAACAGTTCTCCAACTAGTTCATCACAAATGCTCATGTCAAACCAATGCCAATATTTTGGGCTAAATGTATTTCCCTGCTGCTTTTGTAATCTAAATGCTCTTTTGGCTTGATAGAACAAATGTCCTATCCGGCCCCTTCTTCGCTTTTTCCACATCAATGGATTGTGAATTTGAGTTCATCTTCCTAAGATAAAAGATTAAATGCTGAAGAAGTAACAAATCACTTCTCTCCCACTGTAACTTGTGATTTAGTTCTTTATAAGTGATGCTTGTATATTACAAAACACAACTATTTCTTCCACATAATTGATATAAACGTGAGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTGGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG CGAATTTATAATTTAATTTTAAAAAAGAAAAATAAAAAATCCCCCGGTTTCTCTAGCAGCGGCGGCAGGGTTTAGCATATCAATGCCCTAAATCTAAGACGGAACTCCGTTCGTTCATCGTGGCTGCATTCTCAGATTTGCCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTCGAGTCCATGCTTCCATTTCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGTGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTGGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTGGCGTTGCTTCTAAACGACCTTTCTCTAAGTGCTCTGTAAGGATTCCAGTTGAAATGAGCTTCTGCGTCGAGTCCATGCTTCCATTTCATTCTGCAACTTCTTCGGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCGTAGTTATGGTTGGCTTTCAGAAGTACAGCCGATGGAGGATGTAATATGTGTGATATACACAATTGACCCTATATTTTTGGCCCTTAGAATGAAAGATGAAAAGGAGGAGGATGAAATAGTGAAGGGAAGAAAGAAGCCCGAGGCCGAGTGCTTCCCTCTTGAGTTAGGGGTGGCGTGGTATTCCACAGGGAGAGGTTTTTCAAATTGTGGCGCACTCTCAGGGCGGAAAGTTTTGTGTGCAGAGTTCTACATTGTGACAGTGGCCGCTGCTAAATTTGGCGAGCTGATCCGCTGGAATTTGGTTTTCCATGTGTTGGCTTTCAGTCTAGTTTGCATGTCTTAG MASFAARAIFRSSSGKAATLLSVGARAAPARSPFGVASKRPFSKCSVRIPVEMSFCVESMLPFHSATSSALMTSMLSVSRRSYGWLSEVQPMEDVICVIYTIDPIFLALRMKDEKEEDEIVKGRKKPEAECFPLELGVAWYSTGRGFSNCGALSGRKVLCAEFYIVTVAAAKFGELIRWNLVFHVLAFSLVCMS Homology
BLAST of CcUC02G019670 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33 Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of CcUC02G019670 vs. NCBI nr
Match: XP_038887456.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida]) HSP 1 Score: 153.3 bits (386), Expect = 2.2e-33 Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of CcUC02G019670 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida]) HSP 1 Score: 151.8 bits (382), Expect = 6.3e-33 Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0
BLAST of CcUC02G019670 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 149.1 bits (375), Expect = 4.1e-32 Identity = 80/93 (86.02%), Postives = 86/93 (92.47%), Query Frame = 0
BLAST of CcUC02G019670 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 148.7 bits (374), Expect = 5.3e-32 Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.1e-11 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31 Identity = 79/93 (84.95%), Postives = 83/93 (89.25%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31 Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31 Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31 Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of CcUC02G019670 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31 Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0
BLAST of CcUC02G019670 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CcUC02G019670 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CcUC02G019670 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of CcUC02G019670 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11 Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0
BLAST of CcUC02G019670 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 1.9e-11 Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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