CcUC02G019090 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G019090
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L6
Location	CicolChr02: 1802649 .. 1806044 (+)
RNA-Seq Expression	CcUC02G019090
Synteny	CcUC02G019090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATTCAGAATTGCGTCTTCTCCACCTTATCCTTCTCGGCTCCTATTGCCTGCAAGTCACTGTGTCATCTTCTTCGGAATCAGACCCAAAAGGGGTCTCTCTTGCTCTTTCATATTGGGTATTCTGCTCTCCACTGAGAATGGCAGTTTCTTCTACTCCTCTTCAACCTCCAAGTTTGATGCACACACCTAAGTAAGTTTCTGTTTTCTTGACATTATTACTCACTACATTTCTGGCTCTTTAGCTAACATACTTTTTGGGACACCCAATTTCAGTGTGTCTAGATGATTTACAAGTACTATGGATTGCTTTAATTGTTTTTATTTTCATATTCAGAGAGTTTCTTGAAACTCATCGACTGATTTTTAGGTTGTGTGTCTTCCATTTTGGTATAATTACGAATTATTTATATCTATAATTTCTTTGTTGAATTTCTTTGTTTTTTTTGTTTTTTTTTTTTTTCCCATGTTTCTTGCTGCTAATTGAGTTATTCCCTAGCTCAACAATGCCTATTTGTTCAACCAACAATTACTCTCTAAGAATTGGTCAAGCTATGCTTTATATCAGCCCATTACAGGGAATATAACACAAAGAACAACAATAAACGGACAGCAGTTCAGATTTTTAACAATTAACCCTTTGGGTGTTTGTTTTTCATGCTTTTGGCTATGATTCGAAGTTATTTTCTAGCCTAAAACGCACACCTATTGAACCAACAAATAGTCCTTAAGAATTAATCCATCCAAGCTCCTTGTTAGCCGAAAACAGTAGCTGATGCTCACTTTTCAACACAAAACAGCAGTAAAATTAATGACTAACAGCTGAATTTTTGACAGCAACTATTTTTCATTGTTTCTTCATCCTTTGCTGCCAATTTATACCATATTCTTCAATTTCAAAATGAAAATTAAAGAGTGGACTCAACAAAGATTGGTTTTATGGCCTATTCTTCCTCCAAATCATCAAGAACTCTTTCAAAAGTCCCAACCTCCAGCTGTCCGGTACTCTCAAAATCAGCTCCAACAACCCATGACTTCTGCCTTCCCGAAATTCTGCACAGCCTTCAAATTTTCATAAAAAACTTCAACTTCCCAAGCTCAAATTCGATATGCAGCCCATGGTTGTCTTCCTAACTCATTCCTCTTTCACTTCCAGCAAACATTTGAGCATTGCACGAGCCAAAATGGGAACGCCACTCTCCTTCATTCCTCTTTCACTTCCAGCAAACATTTGAGCATTGCACGAGCCAAAATGGGAACGCCACTCTCCCTTTGCTGAGGATAAATATCCGCTGACTGCACCTTTTCAATTTCAAATGGTTAATTTCCACCTCTTACTCCACTTTTTCTCTCCCACTAAATTAGTTCCCACTTCCCTAACTTTCTTATTTGGTAAGTATTTTAAATAATTTACTTAATCCCTCAAAGCTTTTTAAATTACTTTCGTAAGAAAACTCTCCTTCTTCTCGGGTACTTTGCCACTTTTTATTTTTATTTTTTAAACTTAAATACCTAAGCACTTCCTTTTCCTTCAACACTTAGTGCTTAGACCAATCTTCCCCTTAATTTCAAATTAAACATACTTCCTCTTATTAAGCATTTAACAAATCTTTCCTTGAACATCACAACCCTAAAGGTGAATTTTTTTCTGCTGGTCACAATGTCATGAAGATGTAAATATAGCGGATAGAATTTAGAGAAAGTGTCTTACATGGTCCTAAAATCTAGTTTTGTTTTTAAGTTGTCCTAACGTTGTAGTTGTATGGTAGAAAATTTTCATCTGTCTGATTCTCTGACCACTTCCAGTTAGGAGGTTTCAATCCTCTGCTGTTTGAATATGTTTAGAGCTTCTGTTACACTGGCCTTTGGGTTGATGTTTGTGTGTTTGAACTTCTAGCCATCACTAACAATGGTCATCTACACATTATCCTCTCTTTTATGTGACTGGGCTCCTTGCAGTTAGAGAGTTATAGAGAAAATAGAATGATGGACATTTCTTGAACATGGAGTGGGTCTAATGGAAGTTTTTTTCCCGCTCTATTAATTTACCGGATAGAGCTTGTCAGGGATGCCCTTGAATTGATGGGCTCAAGGATGTAAGCTTAGATAATGTGTAACAATACGTTGAGCTCCTTGCAAAAGGAGACTTATTACTAGGAAATAAAGAATAAGAAACTATTTCATGAACACATCAGTGGATTGCCAACATGAGCATAGTACTCCCTCCTTTGAAATCAAAGGTTCCATTCCTCATATGCACATTTGTTGTCGAAAAACTTCATAGTGATGTTGTCTTTTTTATATGAAAGAACTTGACCAGCCTAGTATGTCCAGTGTTGGTTGTTGTTGTCTTTTATTTAACCTTAAAGTTCTGTTTGTAAAAACAAACATTCTAAAATTTGAAACCATCTTCGTCATTGTCTCTCAGCAATTTTCGGTCTACATTTTTGGGAGAAAAGAATGGATTCTATGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACGTTGCAGGGACAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCATAAAGGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGGCTTTTCAGGTAATCTCATCATCGATTATTTTGCTTTTCTTTGTCTTTAAGTTTAGTTTGCATGGGTCACTTGCTTTTATATATGTCTCTTCAAATTCTGAAAATCCCAAGATGACTTCATGCTATGAATGTAAACAACCTGCCTTTGTTCCTTCTTTTGAAATTCAAATGAATGAAGCCTGATGGCAAAAGTAGCCATTGTATCATACATACATGACCCTTTCAATTGATTTCCTTAGAACACTTACGGACAACATGGTGGTAGGAGTGTCGAAGGGGTTTGAAAAGAAACTTCAATTGATCGGAGTTGGTTATCGAGCTATGGTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATACCGGATGGGATTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCACCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGATGGTTTGTAATTCATTGTTGGTTTTTCCTCTCTTTTTGAAATATTTGCATTGCCTTTCTAATATCAAAAAGGATTATTGGCACATAACTAT

mRNA sequence

CCCAATTCAGAATTGCGTCTTCTCCACCTTATCCTTCTCGGCTCCTATTGCCTGCAAGTCACTGTGTCATCTTCTTCGGAATCAGACCCAAAAGGGGTCTCTCTTGCTCTTTCATATTGGGTATTCTGCTCTCCACTGAGAATGGCAGTTTCTTCTACTCCTCTTCAACCTCCAAGTTTGATGCACACACCTAACAATTTTCGGTCTACATTTTTGGGAGAAAAGAATGGATTCTATGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACGTTGCAGGGACAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCATAAAGGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGGCTTTTCAGAACACTTACGGACAACATGGTGGTAGGAGTGTCGAAGGGGTTTGAAAAGAAACTTCAATTGATCGGAGTTGGTTATCGAGCTATGGTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATACCGGATGGGATTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCACCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGATGGTTTGTAATTCATTGTTGGTTTTTCCTCTCTTTTTGAAATATTTGCATTGCCTTTCTAATATCAAAAAGGATTATTGGCACATAACTAT

Coding sequence (CDS)

CCCAATTCAGAATTGCGTCTTCTCCACCTTATCCTTCTCGGCTCCTATTGCCTGCAAGTCACTGTGTCATCTTCTTCGGAATCAGACCCAAAAGGGGTCTCTCTTGCTCTTTCATATTGGGTATTCTGCTCTCCACTGAGAATGGCAGTTTCTTCTACTCCTCTTCAACCTCCAAGTTTGATGCACACACCTAACAATTTTCGGTCTACATTTTTGGGAGAAAAGAATGGATTCTATGTTTCTGCAATGCCTGTATGTCATATTGGTTTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACGTTGCAGGGACAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCATAAAGGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGGCTTTTCAGAACACTTACGGACAACATGGTGGTAGGAGTGTCGAAGGGGTTTGAAAAGAAACTTCAATTGATCGGAGTTGGTTATCGAGCTATGGTAGAAGGAAAAGACTTGGTATTGAATCTTGGGTTCTCTCATCCAGTTAGAATGACCATACCGGATGGGATTCAAGTAAAGGTGGAAGAAAACACCAGAATTACAGTGAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAATGGAGACCACCAGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAATTGTAAGAAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

PNSELRLLHLILLGSYCLQVTVSSSSESDPKGVSLALSYWVFCSPLRMAVSSTPLQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK

Homology

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BLAST of CcUC02G019090 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 448.0 bits (1151), Expect = 6.1e-122
Identity = 224/233 (96.14%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MA+SS P LQPPSL+H+PNNFRSTFLGEKNGF VSAMPVCHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGII+VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRM IPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

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BLAST of CcUC02G019090 vs. NCBI nr
Match: XP_038888704.1 (50S ribosomal protein L6, chloroplastic [Benincasa hispida])

HSP 1 Score: 446.0 bits (1146), Expect = 2.3e-121
Identity = 221/233 (94.85%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MAVSSTP LQPPSLMHT NNFRSTFLGE+NGFYVSAMPVCHIG+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPSLQPPSLMHTANNFRSTFLGERNGFYVSAMPVCHIGVLRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           I VPSNVTI+LQGQDLKVKGPLGELSILYPRE+KIEREDSGII+VKKALETRRANQMHGL
Sbjct: 61  IPVPSNVTISLQGQDLKVKGPLGELSILYPREIKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV+M IPDGIQVKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVKMAIPDGIQVKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

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BLAST of CcUC02G019090 vs. NCBI nr
Match: XP_004144493.1 (50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_020508 [Cucumis sativus])

HSP 1 Score: 441.0 bits (1133), Expect = 7.4e-120
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MA+SS P LQPP+ +H+PNNFRSTFLGEKNGF VSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGII+VKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRM IPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

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BLAST of CcUC02G019090 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 416.4 bits (1069), Expect = 2.0e-112
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MAVSSTP L   SL+   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI++VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRM IP+G+QVKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

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BLAST of CcUC02G019090 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.0 bits (1068), Expect = 2.6e-112
Identity = 210/233 (90.13%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MAVSSTP L   SL+   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI++VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRM IP+G+QVKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 231

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BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.3e-94
Identity = 166/212 (78.30%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 68  RSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGP 127
           RS FLG++N F VS+ P   +G   KTIECKESRIGKQPI VPSNVTI L+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 128 LGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQ 187
           LGEL++ YPREV++ +E+SG ++VKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 188 LIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCAIGQFAASI 247
           L+GVGYRA V+GK+LVLNLGFSHPV+M IPD ++VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 248 RQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

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BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 335.5 bits (859), Expect = 5.8e-91
Identity = 161/216 (74.54%), Postives = 189/216 (87.50%), Query Frame = 0


Query: 64  PNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLK 123
           P++ +S FLG K     S +PV  IG  RK+++CKESRIGKQPI VP+NV I ++GQDLK
Sbjct: 6   PSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLK 65

Query: 124 VKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFE 183
           VKGPLGELSI YPREV +E+++SG ++V+KA+ETRRANQMHGLFRTLTDNMVVGVSKGFE
Sbjct: 66  VKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFE 125

Query: 184 KKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCAIGQF 243
           KKLQL+GVGYRA VEGKDL+L+LGFSHPVRM IPD +QVKVEENT++TVSG DK  +GQF
Sbjct: 126 KKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQF 185

Query: 244 AASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           AA+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 186 AATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

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BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.3e-52
Identity = 106/179 (59.22%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 100 SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRR 159
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 160 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDG 219
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA V+G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 220 IQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 279
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

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BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-51
Identity = 100/179 (55.87%), Postives = 129/179 (72.07%), Query Frame = 0


Query: 100 SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRR 159
           SRIGK+PI +P+ VTI ++GQ + VKGP G L +  P EV + +E    ++V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGE-TVEVQRVDDSRT 61

Query: 160 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDG 219
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV MT+P G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 220 IQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 279
           I V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

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BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 100 SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRR 159
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E +D G+++V +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 160 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDG 219
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 220 IQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 279
           I V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.9e-122
Identity = 224/233 (96.14%), Postives = 229/233 (98.28%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MA+SS P LQPPSL+H+PNNFRSTFLGEKNGF VSAMPVCHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGII+VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRM IPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.6e-120
Identity = 220/233 (94.42%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MA+SS P LQPP+ +H+PNNFRSTFLGEKNGF VSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGII+VKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRM IPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.5e-113
Identity = 211/233 (90.56%), Postives = 220/233 (94.42%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MAVSSTP L   SL+   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNV ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI++VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRM IP+G+QVKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL
Match: A0A6J1HVU0 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468304 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.4e-111
Identity = 209/233 (89.70%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 48  MAVSSTP-LQPPSLMHTPNNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQP 107
           MAVSSTP L   SL+   NNFRSTFLGEKNGF +S MPV H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLI--ANNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 108 IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGL 167
           IQVPSNV ITLQGQDLKVKGPLGELSI+YPREVKIEREDSGI++VKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSIIYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 168 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEE 227
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV M IP+G+QVKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVIMAIPEGLQVKVEE 180

Query: 228 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.9e-111
Identity = 200/215 (93.02%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 65  NNFRSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKV 124
           +NFRSTFLGEKNGF VS MPVCHIGLLRKTIECKESRIGKQPIQVPSNV I LQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKV 71

Query: 125 KGPLGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 184
           KGPLGELSILYPREVKIEREDSGI++VKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 72  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 131

Query: 185 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCAIGQFA 244
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRM IPDG+QVKVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 245 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of CcUC02G019090 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 345.9 bits (886), Expect = 3.0e-95
Identity = 166/212 (78.30%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 68  RSTFLGEKNGFYVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGP 127
           RS FLG++N F VS+ P   +G   KTIECKESRIGKQPI VPSNVTI L+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 128 LGELSILYPREVKIEREDSGIIKVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQ 187
           LGEL++ YPREV++ +E+SG ++VKK +ETRRANQMHGLFRTLTDNMVVGVSKGFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 188 LIGVGYRAMVEGKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCAIGQFAASI 247
           L+GVGYRA V+GK+LVLNLGFSHPV+M IPD ++VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 248 RQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 280
           R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of CcUC02G019090 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-20
Identity = 44/98 (44.90%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 182 FEKKLQLIGVGYRAMVE--GKDLVLNLGFSHPVRMTIPDGIQVKVEENTRITVSGYDKCA 241
           F + L+++GVGY+A  E  G+ L L LG+SH V + +P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 242 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 278
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of CcUC02G019090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455431.1	6.1e-122	96.14	PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]	[more]
XP_038888704.1	2.3e-121	94.85	50S ribosomal protein L6, chloroplastic [Benincasa hispida]	[more]
XP_004144493.1	7.4e-120	94.42	50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetic...	[more]
XP_022952947.1	2.0e-112	90.56	50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]	[more]
KAG6572299.1	2.6e-112	90.13	50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CcUC02G019090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	4.3e-94	78.30	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	5.8e-91	74.54	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	5.3e-52	59.22	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B1WQS5	3.4e-51	55.87	50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]
B7KI01	2.2e-50	55.31	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]

BLAST of CcUC02G019090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0W5	2.9e-122	96.14	50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ...	[more]
A0A0A0K3K9	3.6e-120	94.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1	[more]
A0A6J1GLT4	9.5e-113	90.56	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HVU0	1.4e-111	89.70	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1C3Z5	8.9e-111	93.02	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CcUC02G019090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	3.0e-95	78.30	Ribosomal protein L6 family	[more]
AT2G18400.1	4.2e-20	44.90	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 198..214 score: 49.15 coord: 240..261 score: 66.42 coord: 170..195 score: 60.3
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 100..275 e-value: 2.5E-71 score: 237.0
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 99..275 score: 37.074493
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 182..279 e-value: 5.3E-41 score: 140.7
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 98..181 e-value: 7.3E-26 score: 92.5
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 182..275
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 100..181
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 109..181 e-value: 8.3E-15 score: 55.2 coord: 189..263 e-value: 6.0E-20 score: 71.7
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 65..279
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 65..279
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 253..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G019090.1	CcUC02G019090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome